Rroxscaffold_2G00106030

B-cell receptor-associated protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
29555686 .. 29559883
4198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106030.1

Sequence Viewer

Length: 957 bp
ATGGCAGTCTTTCCCACCGTTATTCCCTCTACCGACACCGATGACTTTGAGCATAATTTTAACTTTCACAATGATAATGAACTGTCTGGTGCTGTTTTCTCTGACCCTCTTGTCAACTTCGATTCGGGTGATGCTGTTGAACAGCAAGACCTCCTCGAAGAACATGGCCATAGCGAGGCTGCTCAACTTGGTGGACTTCGTATGAATGGACTTTGCCAGAACATCAGGAACCTAAACTCTGAACTTGAGTCCAAGGCAAAAGACGTTAATTCTGCAGAAGCCAAGACAATTTCCATGAGGAAGCAATCTGAAGAATTGGTTCTTGAGCGTGATCGTTTACTTGAGTCATCGGGCACCAGACTCAAACAACTGGAATCTGAGCTCGAGACCAAGACGAGAGACATTAGTATTGCAAAAGCCAATAATACCGCTCTGAAGAAACAGCTTGATCAGCTTCTTCTCGAGTATGATGTTTTACTGGAGAGAAACCAAATTATAAAGAATCAGTCGGAGTCATTGAACACAAGAGTCAAAGAGCTAGAGGCTGAAGTGGAGACTAGGACGAAAGATGTTAAAGTTGCAGAAGCCAATCACATTACTCTAAGGAAGCAACTTGAAAAGAGCCTCCTCGAGAATGACCGTCTATCTGAATCGAATCAAGTTTTGAACCACCAGTTGCAGTCATCGGGCACGAGACTTCAGCAACTAAAATTTGAACTTGAAACCAAGAGGAATGAAGCTAATGCTGCAGAAGCCAAAGTTGTTGCTCTAAGGAAGGAAAAGCAAGATTTAAATATCCAGTTGCAATCATCCAGCACCAGTCTTAGACGTAAAGAATATGAACTCGAGACTAAGACAAAGAATGTTACTACAGCCGAAGCGAAAAATTTAGATCTAAGGAGGCAACTAGGATCTGCAGAACTGCAGAAGCCTTCAGGAAAGAAATCCAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000139 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0005811 GO:0005886 GO:0005887 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0007154 GO:0007165 GO:0007204 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0019222 GO:0019722 GO:0019725 GO:0019932 GO:0019953 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030003 GO:0030135 GO:0030136 GO:0030162 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032434 GO:0032436 GO:0032469 GO:0032471 GO:0032501 GO:0032504 GO:0032580 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033365 GO:0034613 GO:0035556 GO:0035584 GO:0042175 GO:0042176 GO:0042287 GO:0042288 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043280 GO:0043281 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0044877 GO:0045732 GO:0045862 GO:0046907 GO:0048193 GO:0048232 GO:0048471 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051480 GO:0051560 GO:0051561 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0052547 GO:0052548 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070861 GO:0070863 GO:0070972 GO:0070973 GO:0071944 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0080135 GO:0090087 GO:0090316 GO:0097038 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098827 GO:1901800 GO:1902531 GO:1902533 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903362 GO:1903364 GO:1903827 GO:1903829 GO:1904152 GO:1904154 GO:1904292 GO:1904294 GO:1904951 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2000116 GO:2001056 GO:2001233 GO:2001235 GO:2001242 GO:2001244
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

318

Amino Acids

35.95

Weight (kDa)

5.61

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018059)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g31590
rosa_laevigata RLG00000019750
rosa_multiflora Rmu_ssc0000210.1_g000004
rosa_roxburghii Rroxscaffold_2G00106030
rosa_rugosa Rorug02G0351900
rosa_samantha Rh2AG401200 Rh2BG406400 Rh2CG387300 Rh2CG387400 Rh2DG421500
rosa_wichuraiana Rw2G032620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 497
AasI GACNNNNNNGTC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 353
AccBSI CCGCTC 1 cut(s) 431
AciI CCGC 1 cut(s) 429
AclWI GGATC 1 cut(s) 919
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 2 cut(s) 710, 886
AcuI CTGAAG 5 cut(s) 330, 455, 567, 683, 918
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 6 cut(s) 140, 520, 617, 667, 716, 722
AluBI AGCT 6 cut(s) 382, 445, 454, 538, 740, 953
AluI AGCT 6 cut(s) 382, 445, 454, 538, 740, 953
Alw21I GWGCWC 1 cut(s) 384
Alw26I GTCTC 5 cut(s) 380, 393, 548, 688, 842
AlwI GGATC 1 cut(s) 919
Ama87I CYCGRG 4 cut(s) 383, 461, 629, 845
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 179, 746
ApoI RAATTY 2 cut(s) 710, 886
Asp700I GAANNNNTTC 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 140
AvaI CYCGRG 4 cut(s) 383, 461, 629, 845
BaeGI GKGCMC 2 cut(s) 356, 692
BalI TGGCCA 1 cut(s) 168
BanI GGYRCC 1 cut(s) 353
BanII GRGCYC 1 cut(s) 384
BauI CACGAG 1 cut(s) 691
Bbv12I GWGCWC 1 cut(s) 384
BbvI GCAGC 2 cut(s) 166, 733
BclI TGATCA 1 cut(s) 448
BcoDI GTCTC 5 cut(s) 380, 393, 548, 688, 842
BfaI CTAG 3 cut(s) 539, 558, 908
BfmI CTRYAG 5 cut(s) 273, 747, 870, 915, 923
BglII AGATCT 1 cut(s) 892
BisI GCNGC 2 cut(s) 180, 747
BlsI GCNGC 2 cut(s) 181, 748
BmeT110I CYCGRG 4 cut(s) 383, 461, 629, 845
BmiI GGNNCC 2 cut(s) 230, 355
BmsI GCATC 1 cut(s) 121
BpmI CTGGAG 1 cut(s) 500
BpuEI CTTGAG 3 cut(s) 266, 344, 362
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 5 cut(s) 375, 483, 673, 799, 819
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 809
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 5 cut(s) 375, 483, 673, 799, 819
BseRI GAGGAG 2 cut(s) 143, 617
BseSI GKGCMC 2 cut(s) 356, 692
BseXI GCAGC 2 cut(s) 166, 733
BshFI GGCC 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 353
BsiHKAI GWGCWC 1 cut(s) 384
BsiHKCI CYCGRG 4 cut(s) 383, 461, 629, 845
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 5 cut(s) 380, 393, 548, 688, 842
BsnI GGCC 1 cut(s) 168
Bso31I GGTCTC 1 cut(s) 380
BsoBI CYCGRG 4 cut(s) 383, 461, 629, 845
Bsp1286I GDGCHC 3 cut(s) 356, 384, 692
Bsp143I GATC 4 cut(s) 331, 448, 892, 911
BspACI CCGC 1 cut(s) 429
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 230, 355
BspMAI CTGCAG 4 cut(s) 277, 751, 919, 927
BspPI GGATC 1 cut(s) 919
BspT107I GGYRCC 1 cut(s) 353
BspTNI GGTCTC 1 cut(s) 380
BsrBI CCGCTC 1 cut(s) 431
BsrI ACTGG 5 cut(s) 375, 483, 673, 799, 819
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 4 cut(s) 331, 448, 892, 911
BssSI CACGAG 1 cut(s) 691
BssT1I CCWWGG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 691
Bst4CI ACNGT 3 cut(s) 19, 84, 641
BstDEI CTNAG 6 cut(s) 378, 602, 770, 824, 852, 896
BstF5I GGATG 1 cut(s) 809
BstKTI GATC 4 cut(s) 334, 451, 895, 914
BstMAI GTCTC 5 cut(s) 380, 393, 548, 688, 842
BstMBI GATC 4 cut(s) 331, 448, 892, 911
BstMWI GCNNNNNNNGC 3 cut(s) 451, 746, 752
BstSFI CTRYAG 5 cut(s) 273, 747, 870, 915, 923
BstSLI GKGCMC 2 cut(s) 356, 692
BstV1I GCAGC 2 cut(s) 166, 733
BstX2I RGATCY 2 cut(s) 892, 911
BstYI RGATCY 2 cut(s) 892, 911
BsuRI GGCC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 809
CviAII CATG 2 cut(s) 164, 295
DdeI CTNAG 6 cut(s) 378, 602, 770, 824, 852, 896
DpnI GATC 4 cut(s) 333, 450, 894, 913
DpnII GATC 4 cut(s) 331, 448, 892, 911
DraI TTTAAA 1 cut(s) 792
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 380
Eco53kI GAGCTC 1 cut(s) 382
Eco57I CTGAAG 5 cut(s) 330, 455, 567, 683, 918
Eco88I CYCGRG 4 cut(s) 383, 461, 629, 845
EcoICRI GAGCTC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 2 cut(s) 167, 298
FaiI YATR 8 cut(s) 54, 165, 171, 203, 296, 468, 497, 840
FatI CATG 2 cut(s) 163, 294
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 2 cut(s) 180, 747
FokI GGATG 1 cut(s) 796
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 2 cut(s) 180, 747
FspBI CTAG 3 cut(s) 539, 558, 908
GluI GCNGC 2 cut(s) 180, 747
GsuI CTGGAG 1 cut(s) 500
HaeIII GGCC 1 cut(s) 168
Hin1II CATG 2 cut(s) 167, 298
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 951
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 3 cut(s) 115, 194, 338
Hpy188I TCNGA 7 cut(s) 103, 241, 310, 379, 435, 511, 649
Hpy188III TCNNGA 7 cut(s) 226, 323, 385, 461, 631, 847, 936
Hpy8I GTNNAC 3 cut(s) 115, 194, 338
HpyAV CCTTC 2 cut(s) 769, 942
HpyCH4III ACNGT 3 cut(s) 19, 84, 641
HpyCH4IV ACGT 2 cut(s) 264, 829
HpyCH4V TGCA 8 cut(s) 275, 413, 581, 679, 749, 805, 917, 925
HpyF10VI GCNNNNNNNGC 3 cut(s) 451, 746, 752
HpyF3I CTNAG 6 cut(s) 378, 602, 770, 824, 852, 896
HpySE526I ACGT 2 cut(s) 264, 829
Hsp92II CATG 2 cut(s) 167, 298
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 4 cut(s) 331, 448, 892, 911
Lsp1109I GCAGC 2 cut(s) 166, 733
LweI GCATC 1 cut(s) 121
MaeI CTAG 3 cut(s) 539, 558, 908
MaeII ACGT 2 cut(s) 264, 829
MaeIII GTNAC 1 cut(s) 865
MalI GATC 4 cut(s) 333, 450, 894, 913
MbiI CCGCTC 1 cut(s) 431
MboI GATC 4 cut(s) 331, 448, 892, 911
MboII GAAGA 4 cut(s) 170, 323, 448, 449
MflI RGATCY 2 cut(s) 892, 911
MhlI GDGCHC 3 cut(s) 356, 384, 692
MlsI TGGCCA 1 cut(s) 168
MluCI AATT 7 cut(s) 55, 268, 288, 314, 492, 710, 886
MluNI TGGCCA 1 cut(s) 168
MlyI GAGTC 5 cut(s) 257, 353, 354, 521, 537
MmeI TCCRAC 1 cut(s) 489
Mox20I TGGCCA 1 cut(s) 168
MroXI GAANNNNTTC 1 cut(s) 318
MscI TGGCCA 1 cut(s) 168
MseI TTAA 4 cut(s) 60, 267, 573, 791
Msp20I TGGCCA 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 451, 746, 752
NdeII GATC 4 cut(s) 331, 448, 892, 911
NlaIII CATG 2 cut(s) 167, 298
NlaIV GGNNCC 2 cut(s) 230, 355
PaeR7I CTCGAG 4 cut(s) 383, 461, 629, 845
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 5 cut(s) 122, 374, 502, 650, 655
PkrI GCNGC 2 cut(s) 181, 748
PleI GAGTC 5 cut(s) 256, 352, 354, 520, 536
PpsI GAGTC 5 cut(s) 256, 352, 354, 520, 536
PsiI TTATAA 1 cut(s) 497
Psp124BI GAGCTC 1 cut(s) 384
PspN4I GGNNCC 2 cut(s) 230, 355
PstI CTGCAG 4 cut(s) 277, 751, 919, 927
PsuI RGATCY 2 cut(s) 892, 911
SacI GAGCTC 1 cut(s) 384
SaqAI TTAA 4 cut(s) 60, 267, 573, 791
SatI GCNGC 2 cut(s) 180, 747
Sau3AI GATC 4 cut(s) 331, 448, 892, 911
SchI GAGTC 5 cut(s) 257, 353, 354, 521, 537
SduI GDGCHC 3 cut(s) 356, 384, 692
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 5 cut(s) 273, 747, 870, 915, 923
Sfr274I CTCGAG 4 cut(s) 383, 461, 629, 845
SlaI CTCGAG 4 cut(s) 383, 461, 629, 845
SmiI ATTTAAAT 1 cut(s) 792
SmlI CTYRAG 7 cut(s) 245, 323, 341, 383, 461, 629, 845
SmoI CTYRAG 7 cut(s) 245, 323, 341, 383, 461, 629, 845
Sse9I AATT 7 cut(s) 55, 268, 288, 314, 492, 710, 886
SsiI CCGC 1 cut(s) 429
SspMI CTAG 3 cut(s) 539, 558, 908
SstI GAGCTC 1 cut(s) 384
StyI CCWWGG 1 cut(s) 252
SwaI ATTTAAAT 1 cut(s) 792
TaaI ACNGT 3 cut(s) 19, 84, 641
TaiI ACGT 2 cut(s) 267, 832
TaqI TCGA 7 cut(s) 120, 156, 384, 462, 630, 653, 846
TasI AATT 7 cut(s) 55, 268, 288, 314, 492, 710, 886
TfiI GAWTC 5 cut(s) 122, 374, 502, 650, 655
Tru1I TTAA 4 cut(s) 60, 267, 573, 791
Tru9I TTAA 4 cut(s) 60, 267, 573, 791
TseI GCWGC 2 cut(s) 179, 746
TspDTI ATGAA 4 cut(s) 93, 218, 750, 855
XapI RAATTY 2 cut(s) 710, 886
XhoI CTCGAG 4 cut(s) 383, 461, 629, 845
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 3 cut(s) 539, 558, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.