Rmu_ssc0000210.1_g000004

B-cell receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000210.1
OG0018059
Physical Location & Seq
Reverse (-)
33471 .. 35996
2526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000210.1_g000004.1.cds

Sequence Viewer

Length: 1266 bp
atgataatgaactgtctggtgctgttttctctgaccctcttgtcaacttcgattcgggtgatgctgttgaacagcaagacctcctcgaagaacatggccatagcgaggctgctcaacttggtggacttcgtgttcgtagtcacaatcttcttcaagcctatgaagtttgggacagttgttattgattcacttctcatgggattgtactgctcccttggttttaagatgaatggactttgccagaacatcaggaacctaaacgctgaacttgagtccaaggcaaaagacgttaattctgcagaagcaaagacaaattccatgaggaagcaatctgaagaattggttcttgagcgtgatcgtttacttgagtcatcgggcaccagactcaaacaactggaatctgagctcgagaccaagacgagagacattagtattgcaaaagccaataataccgctctgaagaaacagcttgatcagcttcttctcgagtatgatgttttactggagagaaaccaaattataaagaatcagtcggagtcattgaacacaagagtcaaagagctagaggctgaagtggagactaggacgaaagatgttatagttgcagaagccaatcacattactctaaggaagcaacttgaaaagagcctcctcgagaatgaccgtctatctgaatcgaatcaagttttgaaccaccagttgcagtcatcgggcacgagacttcagcaactaaaatttgaacttgaaaccaagaggaatgaagctaatgctgcagaagccaaagttgttgctctaaggaaggaaaagcaagatttaaatatccagttgcaatcatccagcaccagtcttagacgtaaagaatatgaactcgagactaagacaaagaatgttactacagccgaagcgaagaatttagatctaaggaggcaactaggatctgcagaagccttcaggaaagaaatccaaagcttgaaggaccagttactactcaagcaagtagaatatgaagaagcaagtcaagcaaccactaaggctctaaagaaccagttacagtcatcgagaacaaaactcaaacaactagaatctgcaaaagccgatgctgatgctcgaaggaaggcactggaaacaaaactcgcaaaagtagaatcagaaaaccaaattttaaagaacaaattgcaatcgtcaggaacaaaaagcgtaaatgaagcaaaagctggcaccggtgctgctgaaaaatttggaagattcctttttgaccagttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000139 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0005811 GO:0005886 GO:0005887 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0007154 GO:0007165 GO:0007204 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0019222 GO:0019722 GO:0019725 GO:0019932 GO:0019953 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030003 GO:0030135 GO:0030136 GO:0030162 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032434 GO:0032436 GO:0032469 GO:0032471 GO:0032501 GO:0032504 GO:0032580 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033365 GO:0034613 GO:0035556 GO:0035584 GO:0042175 GO:0042176 GO:0042287 GO:0042288 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043280 GO:0043281 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0044877 GO:0045732 GO:0045862 GO:0046907 GO:0048193 GO:0048232 GO:0048471 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051480 GO:0051560 GO:0051561 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0052547 GO:0052548 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070861 GO:0070863 GO:0070972 GO:0070973 GO:0071944 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0080135 GO:0090087 GO:0090316 GO:0097038 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098827 GO:1901800 GO:1902531 GO:1902533 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903362 GO:1903364 GO:1903827 GO:1903829 GO:1904152 GO:1904154 GO:1904292 GO:1904294 GO:1904951 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2000116 GO:2001056 GO:2001233 GO:2001235 GO:2001242 GO:2001244
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

421

Amino Acids

47.65

Weight (kDa)

9.41

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018059)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g31590
rosa_laevigata RLG00000019750
rosa_multiflora Rmu_ssc0000210.1_g000004
rosa_roxburghii Rroxscaffold_2G00106030
rosa_rugosa Rorug02G0351900
rosa_samantha Rh2AG401200 Rh2BG406400 Rh2CG387300 Rh2CG387400 Rh2DG421500
rosa_wichuraiana Rw2G032620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 521
AasI GACNNNNNNGTC 1 cut(s) 40
AccB1I GGYRCC 2 cut(s) 377, 1217
AccBSI CCGCTC 1 cut(s) 455
AciI CCGC 1 cut(s) 453
AclWI GGATC 1 cut(s) 943
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 5 cut(s) 313, 734, 910, 1158, 1235
AcuI CTGAAG 5 cut(s) 354, 479, 591, 707, 934
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 105
AgeI ACCGGT 1 cut(s) 1220
AgsI TTSAA 8 cut(s) 70, 154, 544, 641, 691, 740, 746, 973
AloI GAACNNNNNNTCC 2 cut(s) 116, 148
AluBI AGCT 7 cut(s) 406, 469, 478, 562, 764, 969, 1214
AluI AGCT 7 cut(s) 406, 469, 478, 562, 764, 969, 1214
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 5 cut(s) 404, 417, 572, 712, 866
AlwI GGATC 1 cut(s) 943
Ama87I CYCGRG 4 cut(s) 407, 485, 653, 869
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 3 cut(s) 109, 770, 1226
ApoI RAATTY 5 cut(s) 313, 734, 910, 1158, 1235
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AsiGI ACCGGT 1 cut(s) 1220
Asp700I GAANNNNTTC 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 976
AsuHPI GGTGA 1 cut(s) 70
AvaI CYCGRG 4 cut(s) 407, 485, 653, 869
AvaII GGWCC 1 cut(s) 976
BaeGI GKGCMC 2 cut(s) 380, 716
BalI TGGCCA 1 cut(s) 98
BanI GGYRCC 2 cut(s) 377, 1217
BanII GRGCYC 1 cut(s) 408
BauI CACGAG 1 cut(s) 715
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 3 cut(s) 96, 757, 1213
BcgI CGANNNNNNTGC 2 cut(s) 1085, 1119
BclI TGATCA 1 cut(s) 472
BcoDI GTCTC 5 cut(s) 404, 417, 572, 712, 866
BfaI CTAG 4 cut(s) 563, 582, 932, 1079
BfmI CTRYAG 4 cut(s) 297, 771, 894, 939
BglII AGATCT 1 cut(s) 916
BisI GCNGC 3 cut(s) 110, 771, 1227
BlsI GCNGC 3 cut(s) 111, 772, 1228
Bme18I GGWCC 1 cut(s) 976
BmeT110I CYCGRG 4 cut(s) 407, 485, 653, 869
BmgT120I GGNCC 1 cut(s) 976
BmiI GGNNCC 3 cut(s) 254, 379, 1219
BmsI GCATC 3 cut(s) 51, 1087, 1093
BpmI CTGGAG 1 cut(s) 524
BpuEI CTTGAG 4 cut(s) 290, 368, 386, 974
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 214, 276
BsaWI WCCGGW 1 cut(s) 1220
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 1220
Bse1I ACTGG 9 cut(s) 399, 507, 697, 823, 843, 979, 1045, 1125, 1258
BseDI CCNNGG 2 cut(s) 214, 276
BseGI GGATG 1 cut(s) 833
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 393
BseNI ACTGG 9 cut(s) 399, 507, 697, 823, 843, 979, 1045, 1125, 1258
BseRI GAGGAG 2 cut(s) 73, 641
BseSI GKGCMC 2 cut(s) 380, 716
BseXI GCAGC 3 cut(s) 96, 757, 1213
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 2 cut(s) 377, 1217
BshTI ACCGGT 1 cut(s) 1220
BsiHKAI GWGCWC 1 cut(s) 408
BsiHKCI CYCGRG 4 cut(s) 407, 485, 653, 869
BsiSI CCGG 1 cut(s) 1221
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 5 cut(s) 404, 417, 572, 712, 866
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 404
BsoBI CYCGRG 4 cut(s) 407, 485, 653, 869
Bsp1286I GDGCHC 3 cut(s) 380, 408, 716
Bsp143I GATC 4 cut(s) 355, 472, 916, 935
BspACI CCGC 1 cut(s) 453
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 394
BspLI GGNNCC 3 cut(s) 254, 379, 1219
BspMAI CTGCAG 3 cut(s) 301, 775, 943
BspPI GGATC 1 cut(s) 943
BspT107I GGYRCC 2 cut(s) 377, 1217
BspTNI GGTCTC 1 cut(s) 404
BsrBI CCGCTC 1 cut(s) 455
BsrFI RCCGGY 1 cut(s) 1220
BsrI ACTGG 9 cut(s) 399, 507, 697, 823, 843, 979, 1045, 1125, 1258
BssAI RCCGGY 1 cut(s) 1220
BssECI CCNNGG 2 cut(s) 214, 276
BssMI GATC 4 cut(s) 355, 472, 916, 935
BssSI CACGAG 1 cut(s) 715
BssT1I CCWWGG 2 cut(s) 214, 276
Bst2BI CACGAG 1 cut(s) 715
Bst4CI ACNGT 4 cut(s) 14, 175, 665, 1053
BstC8I GCNNGC 1 cut(s) 1216
BstDEI CTNAG 7 cut(s) 402, 626, 794, 848, 876, 920, 1029
BstF5I GGATG 1 cut(s) 833
BstKTI GATC 4 cut(s) 358, 475, 919, 938
BstMAI GTCTC 5 cut(s) 404, 417, 572, 712, 866
BstMBI GATC 4 cut(s) 355, 472, 916, 935
BstMWI GCNNNNNNNGC 4 cut(s) 475, 770, 776, 1019
BstSFI CTRYAG 4 cut(s) 297, 771, 894, 939
BstSLI GKGCMC 2 cut(s) 380, 716
BstV1I GCAGC 3 cut(s) 96, 757, 1213
BstX2I RGATCY 2 cut(s) 916, 935
BstYI RGATCY 2 cut(s) 916, 935
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 833
BtsIMutI CAGTG 1 cut(s) 1118
Cac8I GCNNGC 1 cut(s) 1216
Cfr10I RCCGGY 1 cut(s) 1220
Cfr13I GGNCC 1 cut(s) 976
Csp6I GTAC 1 cut(s) 205
CspAI ACCGGT 1 cut(s) 1220
CviAII CATG 3 cut(s) 94, 196, 319
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 7 cut(s) 402, 626, 794, 848, 876, 920, 1029
DpnI GATC 4 cut(s) 357, 474, 918, 937
DpnII GATC 4 cut(s) 355, 472, 916, 935
DraI TTTAAA 2 cut(s) 816, 1164
DrdI GACNNNNNNGTC 1 cut(s) 40
DseDI GACNNNNNNGTC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 96
Ecl136II GAGCTC 1 cut(s) 406
Eco130I CCWWGG 2 cut(s) 214, 276
Eco24I GRGCYC 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 976
Eco53kI GAGCTC 1 cut(s) 406
Eco57I CTGAAG 5 cut(s) 354, 479, 591, 707, 934
Eco88I CYCGRG 4 cut(s) 407, 485, 653, 869
EcoICRI GAGCTC 1 cut(s) 406
EcoT14I CCWWGG 2 cut(s) 214, 276
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 2 cut(s) 214, 276
FaeI CATG 3 cut(s) 97, 199, 322
FaqI GGGAC 1 cut(s) 184
FatI CATG 3 cut(s) 93, 195, 318
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 3 cut(s) 110, 771, 1227
FokI GGATG 1 cut(s) 820
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 3 cut(s) 110, 771, 1227
FspBI CTAG 4 cut(s) 563, 582, 932, 1079
GluI GCNGC 3 cut(s) 110, 771, 1227
GsuI CTGGAG 1 cut(s) 524
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 1221
Hin1II CATG 3 cut(s) 97, 199, 322
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 967
HpaII CCGG 1 cut(s) 1221
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 3 cut(s) 45, 124, 362
Hpy188I TCNGA 7 cut(s) 33, 334, 403, 459, 535, 673, 1150
Hpy188III TCNNGA 9 cut(s) 250, 347, 409, 485, 655, 871, 952, 1059, 1185
Hpy8I GTNNAC 3 cut(s) 45, 124, 362
HpyAV CCTTC 5 cut(s) 793, 958, 967, 1104, 1108
HpyCH4III ACNGT 4 cut(s) 14, 175, 665, 1053
HpyCH4IV ACGT 2 cut(s) 288, 853
HpyCH4V TGCA 9 cut(s) 299, 437, 605, 703, 773, 829, 941, 1088, 1177
HpyF10VI GCNNNNNNNGC 4 cut(s) 475, 770, 776, 1019
HpyF3I CTNAG 7 cut(s) 402, 626, 794, 848, 876, 920, 1029
HpySE526I ACGT 2 cut(s) 288, 853
Hsp92II CATG 3 cut(s) 97, 199, 322
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 4 cut(s) 355, 472, 916, 935
LmnI GCTCC 1 cut(s) 215
Lsp1109I GCAGC 3 cut(s) 96, 757, 1213
LweI GCATC 3 cut(s) 51, 1087, 1093
MaeI CTAG 4 cut(s) 563, 582, 932, 1079
MaeII ACGT 2 cut(s) 288, 853
MaeIII GTNAC 4 cut(s) 139, 889, 981, 1047
MalI GATC 4 cut(s) 357, 474, 918, 937
MbiI CCGCTC 1 cut(s) 455
MboI GATC 4 cut(s) 355, 472, 916, 935
MboII GAAGA 9 cut(s) 100, 139, 142, 347, 472, 473, 919, 1019, 1254
MflI RGATCY 2 cut(s) 916, 935
MhlI GDGCHC 3 cut(s) 380, 408, 716
MlsI TGGCCA 1 cut(s) 98
MluCI AATT 9 cut(s) 292, 313, 338, 516, 734, 910, 1158, 1172, 1235
MluNI TGGCCA 1 cut(s) 98
MlyI GAGTC 5 cut(s) 281, 377, 378, 545, 561
MmeI TCCRAC 1 cut(s) 513
Mox20I TGGCCA 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 342
MscI TGGCCA 1 cut(s) 98
MseI TTAA 4 cut(s) 222, 291, 815, 1163
Msp20I TGGCCA 1 cut(s) 98
MspI CCGG 1 cut(s) 1221
MwoI GCNNNNNNNGC 4 cut(s) 475, 770, 776, 1019
NdeII GATC 4 cut(s) 355, 472, 916, 935
NlaIII CATG 3 cut(s) 97, 199, 322
NlaIV GGNNCC 3 cut(s) 254, 379, 1219
NmuCI GTSAC 1 cut(s) 139
PaeR7I CTCGAG 4 cut(s) 407, 485, 653, 869
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 9 cut(s) 52, 185, 398, 526, 674, 679, 1082, 1145, 1245
PinAI ACCGGT 1 cut(s) 1220
PkrI GCNGC 3 cut(s) 111, 772, 1228
PleI GAGTC 5 cut(s) 280, 376, 378, 544, 560
PpsI GAGTC 5 cut(s) 280, 376, 378, 544, 560
PsiI TTATAA 1 cut(s) 521
Psp124BI GAGCTC 1 cut(s) 408
PspN4I GGNNCC 3 cut(s) 254, 379, 1219
PspPI GGNCC 1 cut(s) 976
PstI CTGCAG 3 cut(s) 301, 775, 943
PsuI RGATCY 2 cut(s) 916, 935
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SacI GAGCTC 1 cut(s) 408
SaqAI TTAA 4 cut(s) 222, 291, 815, 1163
SatI GCNGC 3 cut(s) 110, 771, 1227
Sau3AI GATC 4 cut(s) 355, 472, 916, 935
Sau96I GGNCC 1 cut(s) 976
SchI GAGTC 5 cut(s) 281, 377, 378, 545, 561
SduI GDGCHC 3 cut(s) 380, 408, 716
SfaNI GCATC 3 cut(s) 51, 1087, 1093
SfcI CTRYAG 4 cut(s) 297, 771, 894, 939
Sfr274I CTCGAG 4 cut(s) 407, 485, 653, 869
SgrAI CRCCGGYG 1 cut(s) 1220
SinI GGWCC 1 cut(s) 976
SlaI CTCGAG 4 cut(s) 407, 485, 653, 869
SmiI ATTTAAAT 1 cut(s) 816
SmlI CTYRAG 8 cut(s) 269, 347, 365, 407, 485, 653, 869, 989
SmoI CTYRAG 8 cut(s) 269, 347, 365, 407, 485, 653, 869, 989
Sse9I AATT 9 cut(s) 292, 313, 338, 516, 734, 910, 1158, 1172, 1235
SsiI CCGC 1 cut(s) 453
SspMI CTAG 4 cut(s) 563, 582, 932, 1079
SstI GAGCTC 1 cut(s) 408
StyI CCWWGG 2 cut(s) 214, 276
SwaI ATTTAAAT 1 cut(s) 816
TaaI ACNGT 4 cut(s) 14, 175, 665, 1053
TaiI ACGT 2 cut(s) 291, 856
TaqI TCGA 9 cut(s) 50, 86, 408, 486, 654, 677, 870, 1058, 1108
TasI AATT 9 cut(s) 292, 313, 338, 516, 734, 910, 1158, 1172, 1235
TatI WGTACW 1 cut(s) 204
TfiI GAWTC 9 cut(s) 52, 185, 398, 526, 674, 679, 1082, 1145, 1245
Tru1I TTAA 4 cut(s) 222, 291, 815, 1163
Tru9I TTAA 4 cut(s) 222, 291, 815, 1163
TscAI CASTG 1 cut(s) 1125
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 3 cut(s) 109, 770, 1226
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 7 cut(s) 23, 176, 242, 774, 879, 1020, 1218
TspRI CASTG 1 cut(s) 1125
VpaK11BI GGWCC 1 cut(s) 976
XapI RAATTY 5 cut(s) 313, 734, 910, 1158, 1235
XhoI CTCGAG 4 cut(s) 407, 485, 653, 869
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 4 cut(s) 563, 582, 932, 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.