Rh2BG406400

B-cell receptor-associated protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
57518674 .. 57519714
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG406400.1

Sequence Viewer

Length: 1041 bp
ATGAATGGACTTTGCCAGAACATCAGGAACCTAAACGCTGAACTTGAGTTCAAGGCAAAAGACGTTAATTCTGCAGAAGCAAAGACAAATTCCATGAGGAAGCAATCTGAAGAATTGGTTCTTGAGCGTGATCGTTTACTTGAGTCATCGGGCACCAGACTCAAACAACTGGAATCTGAGCTCGAGACCAAGACGAGAGACATTAGTATTGCAAAAGCCAATAATACCGCTCTGAAGAAACAGCTTGATCAGCTTCTTCTCGAGTATGATGTTTTACTGGAGAGAAACCAAATTATAAAGAATCAGTCGGAGTCATTGAACACAAGAGTCAAAGAGCTAGAGGCTGAAGTGGAGACTAGGACGAAAGATGTTATAGTTGCAGAAGCCAATCACATTACTCTGAGGAAGCAACTTGAAAAGAGCCTCCTCGAGAATGACCGTCTATCTGAATCGAATCAAGTTTTGAACCACCAGTTGCAGTCATCGGGCACGAGACTTCAGCAACTAAAATTTGAACTTGAAACCAAGAGGAATGAAGCTAATGCTGCAGAAGCCAAAGTTGTTGCTCTAAGGAAGGAAAAGCAAGATTTAAATATCCAGTTGCAATCATCCAGCACCAGTCTTAGACGTAAAGAATATGAACTCGAGACTAAGACAAAGAATGTTACTACAGCCGAAGCGAAGAATTTAGATCTAAGGAGGCAACTAGGATCTGCAGAAGCCTTCAGGAAAGAAATCCAAAGCTTGAAGGACCAGTTACTACTCAAGCAAGTAGAATATGAAGAAGCAAGTCAAGCAACCACTAAGGCTCTAAAGAACCAGTTACAGTCATCGAGAACAAAACTCAAACAACTAGAATCTGCAAAAGCCGATGCTGATGCTCGAAGGAAGGCACTGGAAACAAAACTCGCAAAAGTAGAATCAGAAAACCAAATTTTAAAGAACAAATTGCAATCGTCAGGAACAAAAAGCGTAAATGAAGCAAAAGCTGGCACCGGTGCTGCTGAAAAATTTGGAAGATTCCTTTTTGACCAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000139 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0005811 GO:0005886 GO:0005887 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0007154 GO:0007165 GO:0007204 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0019222 GO:0019722 GO:0019725 GO:0019932 GO:0019953 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030003 GO:0030135 GO:0030136 GO:0030162 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032434 GO:0032436 GO:0032469 GO:0032471 GO:0032501 GO:0032504 GO:0032580 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033365 GO:0034613 GO:0035556 GO:0035584 GO:0042175 GO:0042176 GO:0042287 GO:0042288 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043280 GO:0043281 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0044877 GO:0045732 GO:0045862 GO:0046907 GO:0048193 GO:0048232 GO:0048471 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051480 GO:0051560 GO:0051561 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0052547 GO:0052548 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070861 GO:0070863 GO:0070972 GO:0070973 GO:0071944 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0080135 GO:0090087 GO:0090316 GO:0097038 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098827 GO:1901800 GO:1902531 GO:1902533 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903362 GO:1903364 GO:1903827 GO:1903829 GO:1904152 GO:1904154 GO:1904292 GO:1904294 GO:1904951 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2000116 GO:2001056 GO:2001233 GO:2001235 GO:2001242 GO:2001244
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

346

Amino Acids

39.33

Weight (kDa)

9.25

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018059)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g31590
rosa_laevigata RLG00000019750
rosa_multiflora Rmu_ssc0000210.1_g000004
rosa_roxburghii Rroxscaffold_2G00106030
rosa_rugosa Rorug02G0351900
rosa_samantha Rh2AG401200 Rh2BG406400 Rh2CG387300 Rh2CG387400 Rh2DG421500
rosa_wichuraiana Rw2G032620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
AccB1I GGYRCC 2 cut(s) 152, 992
AccBSI CCGCTC 1 cut(s) 230
AciI CCGC 1 cut(s) 228
AclWI GGATC 1 cut(s) 718
AcsI RAATTY 5 cut(s) 88, 509, 685, 933, 1010
AcuI CTGAAG 5 cut(s) 129, 254, 366, 482, 709
AgeI ACCGGT 1 cut(s) 995
AgsI TTSAA 7 cut(s) 52, 319, 416, 466, 515, 521, 748
AluBI AGCT 7 cut(s) 181, 244, 253, 337, 539, 744, 989
AluI AGCT 7 cut(s) 181, 244, 253, 337, 539, 744, 989
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 5 cut(s) 179, 192, 347, 487, 641
AlwI GGATC 1 cut(s) 718
Ama87I CYCGRG 4 cut(s) 182, 260, 428, 644
ApeKI GCWGC 2 cut(s) 545, 1001
ApoI RAATTY 5 cut(s) 88, 509, 685, 933, 1010
AsiGI ACCGGT 1 cut(s) 995
Asp700I GAANNNNTTC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 751
AvaI CYCGRG 4 cut(s) 182, 260, 428, 644
AvaII GGWCC 1 cut(s) 751
BaeGI GKGCMC 2 cut(s) 155, 491
BanI GGYRCC 2 cut(s) 152, 992
BanII GRGCYC 1 cut(s) 183
BauI CACGAG 1 cut(s) 490
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 532, 988
BcgI CGANNNNNNTGC 2 cut(s) 860, 894
BclI TGATCA 1 cut(s) 247
BcoDI GTCTC 5 cut(s) 179, 192, 347, 487, 641
BfaI CTAG 4 cut(s) 338, 357, 707, 854
BfmI CTRYAG 4 cut(s) 72, 546, 669, 714
BglII AGATCT 1 cut(s) 691
BisI GCNGC 2 cut(s) 546, 1002
BlsI GCNGC 2 cut(s) 547, 1003
Bme18I GGWCC 1 cut(s) 751
BmeT110I CYCGRG 4 cut(s) 182, 260, 428, 644
BmgT120I GGNCC 1 cut(s) 751
BmiI GGNNCC 3 cut(s) 29, 154, 994
BmsI GCATC 2 cut(s) 862, 868
BpmI CTGGAG 1 cut(s) 299
BpuEI CTTGAG 4 cut(s) 65, 143, 161, 749
BsaI GGTCTC 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 995
Bse118I RCCGGY 1 cut(s) 995
Bse1I ACTGG 9 cut(s) 174, 282, 472, 598, 618, 754, 820, 900, 1033
BseGI GGATG 1 cut(s) 608
BseMII CTCAG 2 cut(s) 168, 392
BseNI ACTGG 9 cut(s) 174, 282, 472, 598, 618, 754, 820, 900, 1033
BseRI GAGGAG 1 cut(s) 416
BseSI GKGCMC 2 cut(s) 155, 491
BseXI GCAGC 2 cut(s) 532, 988
BshNI GGYRCC 2 cut(s) 152, 992
BshTI ACCGGT 1 cut(s) 995
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 4 cut(s) 182, 260, 428, 644
BsiSI CCGG 1 cut(s) 996
BsmAI GTCTC 5 cut(s) 179, 192, 347, 487, 641
Bso31I GGTCTC 1 cut(s) 179
BsoBI CYCGRG 4 cut(s) 182, 260, 428, 644
Bsp1286I GDGCHC 3 cut(s) 155, 183, 491
Bsp143I GATC 4 cut(s) 130, 247, 691, 710
BspACI CCGC 1 cut(s) 228
BspCNI CTCAG 2 cut(s) 169, 393
BspLI GGNNCC 3 cut(s) 29, 154, 994
BspMAI CTGCAG 3 cut(s) 76, 550, 718
BspPI GGATC 1 cut(s) 718
BspT107I GGYRCC 2 cut(s) 152, 992
BspTNI GGTCTC 1 cut(s) 179
BsrBI CCGCTC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 995
BsrI ACTGG 9 cut(s) 174, 282, 472, 598, 618, 754, 820, 900, 1033
BssAI RCCGGY 1 cut(s) 995
BssMI GATC 4 cut(s) 130, 247, 691, 710
BssSI CACGAG 1 cut(s) 490
Bst2BI CACGAG 1 cut(s) 490
Bst4CI ACNGT 2 cut(s) 440, 828
BstC8I GCNNGC 1 cut(s) 991
BstDEI CTNAG 7 cut(s) 177, 401, 569, 623, 651, 695, 804
BstF5I GGATG 1 cut(s) 608
BstKTI GATC 4 cut(s) 133, 250, 694, 713
BstMAI GTCTC 5 cut(s) 179, 192, 347, 487, 641
BstMBI GATC 4 cut(s) 130, 247, 691, 710
BstMWI GCNNNNNNNGC 4 cut(s) 250, 545, 551, 794
BstSFI CTRYAG 4 cut(s) 72, 546, 669, 714
BstSLI GKGCMC 2 cut(s) 155, 491
BstV1I GCAGC 2 cut(s) 532, 988
BstX2I RGATCY 2 cut(s) 691, 710
BstYI RGATCY 2 cut(s) 691, 710
BtsCI GGATG 1 cut(s) 608
BtsIMutI CAGTG 1 cut(s) 893
Cac8I GCNNGC 1 cut(s) 991
Cfr10I RCCGGY 1 cut(s) 995
Cfr13I GGNCC 1 cut(s) 751
CspAI ACCGGT 1 cut(s) 995
CviAII CATG 1 cut(s) 94
DdeI CTNAG 7 cut(s) 177, 401, 569, 623, 651, 695, 804
DpnI GATC 4 cut(s) 132, 249, 693, 712
DpnII GATC 4 cut(s) 130, 247, 691, 710
DraI TTTAAA 2 cut(s) 591, 939
Ecl136II GAGCTC 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 751
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 5 cut(s) 129, 254, 366, 482, 709
Eco88I CYCGRG 4 cut(s) 182, 260, 428, 644
EcoICRI GAGCTC 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 1 cut(s) 97
FaiI YATR 6 cut(s) 95, 267, 296, 374, 639, 780
FatI CATG 1 cut(s) 93
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 546, 1002
FokI GGATG 1 cut(s) 595
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 2 cut(s) 546, 1002
FspBI CTAG 4 cut(s) 338, 357, 707, 854
GluI GCNGC 2 cut(s) 546, 1002
GsuI CTGGAG 1 cut(s) 299
HapII CCGG 1 cut(s) 996
Hin1II CATG 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 742
HpaII CCGG 1 cut(s) 996
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 7 cut(s) 109, 178, 234, 310, 402, 448, 925
Hpy188III TCNNGA 9 cut(s) 25, 122, 184, 260, 430, 646, 727, 834, 960
Hpy8I GTNNAC 1 cut(s) 137
HpyAV CCTTC 5 cut(s) 568, 733, 742, 879, 883
HpyCH4III ACNGT 2 cut(s) 440, 828
HpyCH4IV ACGT 2 cut(s) 63, 628
HpyCH4V TGCA 9 cut(s) 74, 212, 380, 478, 548, 604, 716, 863, 952
HpyF10VI GCNNNNNNNGC 4 cut(s) 250, 545, 551, 794
HpyF3I CTNAG 7 cut(s) 177, 401, 569, 623, 651, 695, 804
HpySE526I ACGT 2 cut(s) 63, 628
Hsp92II CATG 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 4 cut(s) 130, 247, 691, 710
Lsp1109I GCAGC 2 cut(s) 532, 988
LweI GCATC 2 cut(s) 862, 868
MaeI CTAG 4 cut(s) 338, 357, 707, 854
MaeII ACGT 2 cut(s) 63, 628
MaeIII GTNAC 3 cut(s) 664, 756, 822
MalI GATC 4 cut(s) 132, 249, 693, 712
MbiI CCGCTC 1 cut(s) 230
MboI GATC 4 cut(s) 130, 247, 691, 710
MboII GAAGA 6 cut(s) 122, 247, 248, 694, 794, 1029
MflI RGATCY 2 cut(s) 691, 710
MhlI GDGCHC 3 cut(s) 155, 183, 491
MluCI AATT 9 cut(s) 67, 88, 113, 291, 509, 685, 933, 947, 1010
MlyI GAGTC 4 cut(s) 152, 153, 320, 336
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 7 cut(s) 90, 334, 396, 434, 437, 522, 693
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 3 cut(s) 66, 590, 938
MspI CCGG 1 cut(s) 996
MwoI GCNNNNNNNGC 4 cut(s) 250, 545, 551, 794
NdeII GATC 4 cut(s) 130, 247, 691, 710
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 3 cut(s) 29, 154, 994
PaeR7I CTCGAG 4 cut(s) 182, 260, 428, 644
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 7 cut(s) 173, 301, 449, 454, 857, 920, 1020
PinAI ACCGGT 1 cut(s) 995
PkrI GCNGC 2 cut(s) 547, 1003
PleI GAGTC 4 cut(s) 151, 153, 319, 335
PpsI GAGTC 4 cut(s) 151, 153, 319, 335
PsiI TTATAA 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 183
PspN4I GGNNCC 3 cut(s) 29, 154, 994
PspPI GGNCC 1 cut(s) 751
PstI CTGCAG 3 cut(s) 76, 550, 718
PsuI RGATCY 2 cut(s) 691, 710
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 3 cut(s) 66, 590, 938
SatI GCNGC 2 cut(s) 546, 1002
Sau3AI GATC 4 cut(s) 130, 247, 691, 710
Sau96I GGNCC 1 cut(s) 751
SchI GAGTC 4 cut(s) 152, 153, 320, 336
SduI GDGCHC 3 cut(s) 155, 183, 491
SfaNI GCATC 2 cut(s) 862, 868
SfcI CTRYAG 4 cut(s) 72, 546, 669, 714
Sfr274I CTCGAG 4 cut(s) 182, 260, 428, 644
SgrAI CRCCGGYG 1 cut(s) 995
SinI GGWCC 1 cut(s) 751
SlaI CTCGAG 4 cut(s) 182, 260, 428, 644
SmiI ATTTAAAT 1 cut(s) 591
SmlI CTYRAG 8 cut(s) 44, 122, 140, 182, 260, 428, 644, 764
SmoI CTYRAG 8 cut(s) 44, 122, 140, 182, 260, 428, 644, 764
Sse9I AATT 9 cut(s) 67, 88, 113, 291, 509, 685, 933, 947, 1010
SsiI CCGC 1 cut(s) 228
SspMI CTAG 4 cut(s) 338, 357, 707, 854
SstI GAGCTC 1 cut(s) 183
SwaI ATTTAAAT 1 cut(s) 591
TaaI ACNGT 2 cut(s) 440, 828
TaiI ACGT 2 cut(s) 66, 631
TaqI TCGA 7 cut(s) 183, 261, 429, 452, 645, 833, 883
TasI AATT 9 cut(s) 67, 88, 113, 291, 509, 685, 933, 947, 1010
TfiI GAWTC 7 cut(s) 173, 301, 449, 454, 857, 920, 1020
Tru1I TTAA 3 cut(s) 66, 590, 938
Tru9I TTAA 3 cut(s) 66, 590, 938
TscAI CASTG 1 cut(s) 900
TseI GCWGC 2 cut(s) 545, 1001
TspDTI ATGAA 5 cut(s) 17, 549, 654, 795, 993
TspRI CASTG 1 cut(s) 900
VpaK11BI GGWCC 1 cut(s) 751
XapI RAATTY 5 cut(s) 88, 509, 685, 933, 1010
XhoI CTCGAG 4 cut(s) 182, 260, 428, 644
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 4 cut(s) 338, 357, 707, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.