Rw2G032620

B-cell receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018059
Physical Location & Seq
Reverse (-)
53680844 .. 53683543
2700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G032620.1

Sequence Viewer

Length: 1173 bp
ATGGCCATAGCGAGGCTGCTCAACTTGGTGGACTTCGTGTTCGTAGTCACAATCTTCTTCAAGCCTATGAAGTTTGGGACAGTTGTTATTGATTCACTTCTCATGGGATTGTACTGCTCCCTTGGTTTTAAGATGAATGGACTTTGCCAGAACATCAGGAACCTAAACGCTGAACTTGAGTCCAAGGCAAAAGACGTTAATTCTGCAGAAGCAAAGACAAATTCCATGAGGAAGCAATCTGAAGAATTGGTTCTTGAGCGTGATCGTTTACTTGAGTCATCGGGCACCAGACTCAAACAACTGGAATCTGAGCTCGAGACCAAGACGAGAGACATTAGTATTGCAAAAGCCAATAATACCGCTCTGAAGAAACAGCTTGATCAGCTTCTTCTCGAGTATGATGTTTTACTGGAGAGAAACCAAATTATAAAGAATCAGTCGGAGTCATTGAACACAAGAGTCAAAGAGCTAGAGGCTGAAGTGGAGACTAGGACGAAAGATGTTATAGTTGCAGAAGCCAATCACATTACTCTGAGGAAGCAACTTGAAAAGAGCCTCCTCGAGAATGACCGTCAATCTGAATCGAATCAAGTTTTGAACCACCAGTTGCAGTCATCGGGCACGAGACTTCAGCAACTAAAATTTGAACTTGAAACCAAGAGGAATGAAGCTAATGCTGCAGAAGCCAAAGTTGTTGCTCTAAGGAAGGAAAAGCAAGATTTAAATATCCAGTTGCAATCATCCAGCACCAGTCTTAGACGTAAAGAATATGAACTCGAGACTAAGACAAAGAATGTTACTACAGCCGAAGCGAAGAATTTAGATCTAAGGAGGCAACTAGGATCTGCAGAAGCCTTCAGGAAAGAAATCCAAAGCTTGAAGGACCAGTTACTACTCAAGCAAGTAGAATATGAAGAAGCAAGTCAAGCAACCACTAAGGCTCTAAAGAACCAGTTACAGTCATCGAGAACAAAACTCAAACAACTAGAATCTGCAAAAGCCGATGCTGATGCTCGAAGGAAGGCACTGGAAACAAAACTCGCAAAAGTAGAATCAGAAAACCAAATTTTAAAGAACAAATTGCAATCGTCAGGAACAAAAAGCGTAAATGAAGCAAAAGCTGGCACCGGTGCTGCTGAAAAATTTGGAAGATTCCTTTTTGACCAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000139 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0005811 GO:0005886 GO:0005887 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0007154 GO:0007165 GO:0007204 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0019222 GO:0019722 GO:0019725 GO:0019932 GO:0019953 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030003 GO:0030135 GO:0030136 GO:0030162 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032434 GO:0032436 GO:0032469 GO:0032471 GO:0032501 GO:0032504 GO:0032580 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033365 GO:0034613 GO:0035556 GO:0035584 GO:0042175 GO:0042176 GO:0042287 GO:0042288 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043280 GO:0043281 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0044877 GO:0045732 GO:0045862 GO:0046907 GO:0048193 GO:0048232 GO:0048471 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051480 GO:0051560 GO:0051561 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0052547 GO:0052548 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070861 GO:0070863 GO:0070972 GO:0070973 GO:0071944 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0080135 GO:0090087 GO:0090316 GO:0097038 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098827 GO:1901800 GO:1902531 GO:1902533 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903362 GO:1903364 GO:1903827 GO:1903829 GO:1904152 GO:1904154 GO:1904292 GO:1904294 GO:1904951 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2000116 GO:2001056 GO:2001233 GO:2001235 GO:2001242 GO:2001244
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

390

Amino Acids

44.22

Weight (kDa)

9.3

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018059)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g31590
rosa_laevigata RLG00000019750
rosa_multiflora Rmu_ssc0000210.1_g000004
rosa_roxburghii Rroxscaffold_2G00106030
rosa_rugosa Rorug02G0351900
rosa_samantha Rh2AG401200 Rh2BG406400 Rh2CG387300 Rh2CG387400 Rh2DG421500
rosa_wichuraiana Rw2G032620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AccB1I GGYRCC 2 cut(s) 284, 1124
AccBSI CCGCTC 1 cut(s) 362
AciI CCGC 1 cut(s) 360
AclWI GGATC 1 cut(s) 850
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 220, 641, 817, 1065, 1142
AcuI CTGAAG 5 cut(s) 261, 386, 498, 614, 841
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 12
AgeI ACCGGT 1 cut(s) 1127
AgsI TTSAA 7 cut(s) 61, 451, 548, 598, 647, 653, 880
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
AluBI AGCT 7 cut(s) 313, 376, 385, 469, 671, 876, 1121
AluI AGCT 7 cut(s) 313, 376, 385, 469, 671, 876, 1121
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 5 cut(s) 311, 324, 479, 619, 773
AlwI GGATC 1 cut(s) 850
Ama87I CYCGRG 4 cut(s) 314, 392, 560, 776
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 16, 677, 1133
ApoI RAATTY 5 cut(s) 220, 641, 817, 1065, 1142
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AsiGI ACCGGT 1 cut(s) 1127
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 883
AvaI CYCGRG 4 cut(s) 314, 392, 560, 776
AvaII GGWCC 1 cut(s) 883
BaeGI GKGCMC 2 cut(s) 287, 623
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 284, 1124
BanII GRGCYC 1 cut(s) 315
BauI CACGAG 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 3 cut(s) 3, 664, 1120
BcgI CGANNNNNNTGC 2 cut(s) 992, 1026
BclI TGATCA 1 cut(s) 379
BcoDI GTCTC 5 cut(s) 311, 324, 479, 619, 773
BfaI CTAG 4 cut(s) 470, 489, 839, 986
BfmI CTRYAG 4 cut(s) 204, 678, 801, 846
BglII AGATCT 1 cut(s) 823
BisI GCNGC 3 cut(s) 17, 678, 1134
BlsI GCNGC 3 cut(s) 18, 679, 1135
Bme18I GGWCC 1 cut(s) 883
BmeT110I CYCGRG 4 cut(s) 314, 392, 560, 776
BmgT120I GGNCC 1 cut(s) 883
BmiI GGNNCC 3 cut(s) 161, 286, 1126
BmsI GCATC 2 cut(s) 994, 1000
BpmI CTGGAG 1 cut(s) 431
BpuEI CTTGAG 4 cut(s) 197, 275, 293, 881
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 121, 183
BsaWI WCCGGW 1 cut(s) 1127
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 1127
Bse1I ACTGG 9 cut(s) 306, 414, 604, 730, 750, 886, 952, 1032, 1165
BseDI CCNNGG 2 cut(s) 121, 183
BseGI GGATG 1 cut(s) 740
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 300, 524
BseNI ACTGG 9 cut(s) 306, 414, 604, 730, 750, 886, 952, 1032, 1165
BseRI GAGGAG 1 cut(s) 548
BseSI GKGCMC 2 cut(s) 287, 623
BseXI GCAGC 3 cut(s) 3, 664, 1120
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 284, 1124
BshTI ACCGGT 1 cut(s) 1127
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 4 cut(s) 314, 392, 560, 776
BsiSI CCGG 1 cut(s) 1128
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 5 cut(s) 311, 324, 479, 619, 773
BsmFI GGGAC 1 cut(s) 91
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 311
BsoBI CYCGRG 4 cut(s) 314, 392, 560, 776
Bsp1286I GDGCHC 3 cut(s) 287, 315, 623
Bsp143I GATC 4 cut(s) 262, 379, 823, 842
BspACI CCGC 1 cut(s) 360
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 301, 525
BspLI GGNNCC 3 cut(s) 161, 286, 1126
BspMAI CTGCAG 3 cut(s) 208, 682, 850
BspPI GGATC 1 cut(s) 850
BspT107I GGYRCC 2 cut(s) 284, 1124
BspTNI GGTCTC 1 cut(s) 311
BsrBI CCGCTC 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 1127
BsrI ACTGG 9 cut(s) 306, 414, 604, 730, 750, 886, 952, 1032, 1165
BssAI RCCGGY 1 cut(s) 1127
BssECI CCNNGG 2 cut(s) 121, 183
BssMI GATC 4 cut(s) 262, 379, 823, 842
BssSI CACGAG 1 cut(s) 622
BssT1I CCWWGG 2 cut(s) 121, 183
Bst2BI CACGAG 1 cut(s) 622
Bst4CI ACNGT 3 cut(s) 82, 572, 960
BstC8I GCNNGC 1 cut(s) 1123
BstDEI CTNAG 7 cut(s) 309, 533, 701, 755, 783, 827, 936
BstF5I GGATG 1 cut(s) 740
BstKTI GATC 4 cut(s) 265, 382, 826, 845
BstMAI GTCTC 5 cut(s) 311, 324, 479, 619, 773
BstMBI GATC 4 cut(s) 262, 379, 823, 842
BstMWI GCNNNNNNNGC 4 cut(s) 382, 677, 683, 926
BstSFI CTRYAG 4 cut(s) 204, 678, 801, 846
BstSLI GKGCMC 2 cut(s) 287, 623
BstV1I GCAGC 3 cut(s) 3, 664, 1120
BstX2I RGATCY 2 cut(s) 823, 842
BstYI RGATCY 2 cut(s) 823, 842
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 740
BtsIMutI CAGTG 1 cut(s) 1025
Cac8I GCNNGC 1 cut(s) 1123
Cfr10I RCCGGY 1 cut(s) 1127
Cfr13I GGNCC 1 cut(s) 883
Csp6I GTAC 1 cut(s) 112
CspAI ACCGGT 1 cut(s) 1127
CviAII CATG 2 cut(s) 103, 226
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 7 cut(s) 309, 533, 701, 755, 783, 827, 936
DpnI GATC 4 cut(s) 264, 381, 825, 844
DpnII GATC 4 cut(s) 262, 379, 823, 842
DraI TTTAAA 2 cut(s) 723, 1071
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 2 cut(s) 121, 183
Eco24I GRGCYC 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 883
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 5 cut(s) 261, 386, 498, 614, 841
Eco88I CYCGRG 4 cut(s) 314, 392, 560, 776
EcoICRI GAGCTC 1 cut(s) 313
EcoT14I CCWWGG 2 cut(s) 121, 183
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 2 cut(s) 121, 183
FaeI CATG 2 cut(s) 106, 229
FaiI YATR 9 cut(s) 8, 68, 104, 227, 399, 428, 506, 771, 912
FaqI GGGAC 1 cut(s) 91
FatI CATG 2 cut(s) 102, 225
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 3 cut(s) 17, 678, 1134
FokI GGATG 1 cut(s) 727
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 3 cut(s) 17, 678, 1134
FspBI CTAG 4 cut(s) 470, 489, 839, 986
GluI GCNGC 3 cut(s) 17, 678, 1134
GsuI CTGGAG 1 cut(s) 431
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 1128
Hin1II CATG 2 cut(s) 106, 229
HindIII AAGCTT 1 cut(s) 874
HpaII CCGG 1 cut(s) 1128
Hpy166II GTNNAC 2 cut(s) 31, 269
Hpy188I TCNGA 7 cut(s) 241, 310, 366, 442, 534, 580, 1057
Hpy188III TCNNGA 9 cut(s) 157, 254, 316, 392, 562, 778, 859, 966, 1092
Hpy8I GTNNAC 2 cut(s) 31, 269
HpyAV CCTTC 5 cut(s) 700, 865, 874, 1011, 1015
HpyCH4III ACNGT 3 cut(s) 82, 572, 960
HpyCH4IV ACGT 2 cut(s) 195, 760
HpyCH4V TGCA 9 cut(s) 206, 344, 512, 610, 680, 736, 848, 995, 1084
HpyF10VI GCNNNNNNNGC 4 cut(s) 382, 677, 683, 926
HpyF3I CTNAG 7 cut(s) 309, 533, 701, 755, 783, 827, 936
HpySE526I ACGT 2 cut(s) 195, 760
Hsp92II CATG 2 cut(s) 106, 229
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 4 cut(s) 262, 379, 823, 842
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 3 cut(s) 3, 664, 1120
LweI GCATC 2 cut(s) 994, 1000
MaeI CTAG 4 cut(s) 470, 489, 839, 986
MaeII ACGT 2 cut(s) 195, 760
MaeIII GTNAC 4 cut(s) 46, 796, 888, 954
MalI GATC 4 cut(s) 264, 381, 825, 844
MbiI CCGCTC 1 cut(s) 362
MboI GATC 4 cut(s) 262, 379, 823, 842
MboII GAAGA 8 cut(s) 46, 49, 254, 379, 380, 826, 926, 1161
MflI RGATCY 2 cut(s) 823, 842
MhlI GDGCHC 3 cut(s) 287, 315, 623
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 9 cut(s) 199, 220, 245, 423, 641, 817, 1065, 1079, 1142
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 5 cut(s) 188, 284, 285, 452, 468
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 8 cut(s) 6, 222, 466, 528, 566, 569, 654, 825
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 249
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 129, 198, 722, 1070
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 1128
MwoI GCNNNNNNNGC 4 cut(s) 382, 677, 683, 926
NdeII GATC 4 cut(s) 262, 379, 823, 842
NlaIII CATG 2 cut(s) 106, 229
NlaIV GGNNCC 3 cut(s) 161, 286, 1126
NmuCI GTSAC 1 cut(s) 46
PaeR7I CTCGAG 4 cut(s) 314, 392, 560, 776
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 8 cut(s) 92, 305, 433, 581, 586, 989, 1052, 1152
PinAI ACCGGT 1 cut(s) 1127
PkrI GCNGC 3 cut(s) 18, 679, 1135
PleI GAGTC 5 cut(s) 187, 283, 285, 451, 467
PpsI GAGTC 5 cut(s) 187, 283, 285, 451, 467
PsiI TTATAA 1 cut(s) 428
Psp124BI GAGCTC 1 cut(s) 315
PspN4I GGNNCC 3 cut(s) 161, 286, 1126
PspPI GGNCC 1 cut(s) 883
PstI CTGCAG 3 cut(s) 208, 682, 850
PsuI RGATCY 2 cut(s) 823, 842
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SacI GAGCTC 1 cut(s) 315
SaqAI TTAA 4 cut(s) 129, 198, 722, 1070
SatI GCNGC 3 cut(s) 17, 678, 1134
Sau3AI GATC 4 cut(s) 262, 379, 823, 842
Sau96I GGNCC 1 cut(s) 883
SchI GAGTC 5 cut(s) 188, 284, 285, 452, 468
SduI GDGCHC 3 cut(s) 287, 315, 623
SfaNI GCATC 2 cut(s) 994, 1000
SfcI CTRYAG 4 cut(s) 204, 678, 801, 846
Sfr274I CTCGAG 4 cut(s) 314, 392, 560, 776
SgrAI CRCCGGYG 1 cut(s) 1127
SinI GGWCC 1 cut(s) 883
SlaI CTCGAG 4 cut(s) 314, 392, 560, 776
SmiI ATTTAAAT 1 cut(s) 723
SmlI CTYRAG 8 cut(s) 176, 254, 272, 314, 392, 560, 776, 896
SmoI CTYRAG 8 cut(s) 176, 254, 272, 314, 392, 560, 776, 896
Sse9I AATT 9 cut(s) 199, 220, 245, 423, 641, 817, 1065, 1079, 1142
SsiI CCGC 1 cut(s) 360
SspMI CTAG 4 cut(s) 470, 489, 839, 986
SstI GAGCTC 1 cut(s) 315
StyI CCWWGG 2 cut(s) 121, 183
SwaI ATTTAAAT 1 cut(s) 723
TaaI ACNGT 3 cut(s) 82, 572, 960
TaiI ACGT 2 cut(s) 198, 763
TaqI TCGA 7 cut(s) 315, 393, 561, 584, 777, 965, 1015
TasI AATT 9 cut(s) 199, 220, 245, 423, 641, 817, 1065, 1079, 1142
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 8 cut(s) 92, 305, 433, 581, 586, 989, 1052, 1152
Tru1I TTAA 4 cut(s) 129, 198, 722, 1070
Tru9I TTAA 4 cut(s) 129, 198, 722, 1070
TscAI CASTG 1 cut(s) 1032
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 3 cut(s) 16, 677, 1133
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 6 cut(s) 83, 149, 681, 786, 927, 1125
TspRI CASTG 1 cut(s) 1032
VpaK11BI GGWCC 1 cut(s) 883
XapI RAATTY 5 cut(s) 220, 641, 817, 1065, 1142
XhoI CTCGAG 4 cut(s) 314, 392, 560, 776
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 4 cut(s) 470, 489, 839, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.