Rh2CG387300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
52850044 .. 52850304
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG387300.1

Sequence Viewer

Length: 261 bp
ATGGCTCTAAGTGAGAAAAACCGAAGTTTAAAGAACCAGTTACAGTCATCAAGTACAAAACTCAAACAAATAGAATCTGCAAAAGCCGATGCTGATGCTCGAAGGAAGGCACTGCTGGAAACAAAACTCGCACAAGTAGAATCAGAAAACCAAATTTTGAAGAACAAATTGCAATCGTCAGGAACAAAAAGCGTAAATGAAGCAAAAGCTGGTGCCGGTGCTGCTGAAAAATTTGGAAGATTCCTTTTTGACCAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.43

Weight (kDa)

9.85

Isoelectric Point (pI)

56.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018059)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g31590
rosa_laevigata RLG00000019750
rosa_multiflora Rmu_ssc0000210.1_g000004
rosa_roxburghii Rroxscaffold_2G00106030
rosa_rugosa Rorug02G0351900
rosa_samantha Rh2AG401200 Rh2BG406400 Rh2CG387300 Rh2CG387400 Rh2DG421500
rosa_wichuraiana Rw2G032620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AcsI RAATTY 2 cut(s) 153, 230
AfaI GTAC 1 cut(s) 55
AgsI TTSAA 1 cut(s) 160
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 2 cut(s) 153, 230
BanI GGYRCC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 214
BmsI GCATC 2 cut(s) 79, 85
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 2 cut(s) 37, 253
BseNI ACTGG 2 cut(s) 37, 253
BseXI GCAGC 1 cut(s) 208
BshNI GGYRCC 1 cut(s) 212
BsiSI CCGG 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 2 cut(s) 37, 253
BssAI RCCGGY 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 215
Csp6I GTAC 1 cut(s) 54
CviJI RGCY 3 cut(s) 5, 86, 209
CviKI_1 RGCY 3 cut(s) 5, 86, 209
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 8
DraI TTTAAA 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 222
GluI GCNGC 1 cut(s) 222
HapII CCGG 1 cut(s) 216
HinfI GANTC 3 cut(s) 74, 140, 240
HpaII CCGG 1 cut(s) 216
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 180
HpyAV CCTTC 2 cut(s) 96, 100
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 80, 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 1 cut(s) 8
LpnPI CCDG 5 cut(s) 50, 101, 165, 195, 229
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 2 cut(s) 79, 85
MaeIII GTNAC 1 cut(s) 39
MboII GAAGA 2 cut(s) 172, 249
MluCI AATT 3 cut(s) 153, 167, 230
MseI TTAA 1 cut(s) 29
MspI CCGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 221
NlaIV GGNNCC 1 cut(s) 214
PfeI GAWTC 3 cut(s) 74, 140, 240
PkrI GCNGC 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 214
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 1 cut(s) 222
SetI ASST 1 cut(s) 211
SfaNI GCATC 2 cut(s) 79, 85
SgeI CNNG 9 cut(s) 49, 63, 111, 128, 140, 146, 192, 222, 228
Sse9I AATT 3 cut(s) 153, 167, 230
TaaI ACNGT 1 cut(s) 45
TaqI TCGA 1 cut(s) 100
TasI AATT 3 cut(s) 153, 167, 230
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 3 cut(s) 74, 140, 240
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 117
TseI GCWGC 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 1 cut(s) 117
XapI RAATTY 2 cut(s) 153, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.