Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003997

Physical Location & Seq

Genomic Coordinates Reverse (-)

44265848 .. 44276766

Gene Structure 10919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0351900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAGAAACAAGAAAATGGAGGTGAAGATGGCATTGTTGCCAAGAAGGAGCATTTTGCTGCATTTGGTTACTTACCAGTGAACCAATGGATTACGAGTGCAAAGGGTCTTCACAAACATTTCACAAGCTGTTCTTCCTTTGGTTTACTTTGCTATCTGTGCTGGATCTTCTATCACTCTTATAGCCCCTCAAGTTCATTTGGCAATGGGAATATGTTAACATGTATCGGCTATCCTGTTTTACTATGCAAGGCACATCATTCTCTTTTTTCTTTTCATTTCCATGGTGACGGTGCAGCAAAGCGGGCAAACACCCCTATGTCAATTACAGCAGACAAAAGGTCAGCTGATCAGGAGGGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0005811 GO:0005886 GO:0005887 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0007154 GO:0007165 GO:0007204 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0019222 GO:0019722 GO:0019725 GO:0019932 GO:0019953 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030003 GO:0030135 GO:0030136 GO:0030162 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032434 GO:0032436 GO:0032469 GO:0032471 GO:0032501 GO:0032504 GO:0032580 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033365 GO:0034613 GO:0035556 GO:0035584 GO:0042175 GO:0042176 GO:0042287 GO:0042288 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043280 GO:0043281 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0044877 GO:0045732 GO:0045862 GO:0046907 GO:0048193 GO:0048232 GO:0048471 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051480 GO:0051560 GO:0051561 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0052547 GO:0052548 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070861 GO:0070863 GO:0070972 GO:0070973 GO:0071944 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0080135 GO:0090087 GO:0090316 GO:0097038 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098827 GO:1901800 GO:1902531 GO:1902533 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903362 GO:1903364 GO:1903827 GO:1903829 GO:1904152 GO:1904154 GO:1904292 GO:1904294 GO:1904951 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2000116 GO:2001056 GO:2001233 GO:2001235 GO:2001242 GO:2001244

KEGG Pathways

Metabolic & Signaling

ko04141 ko05165 map04141 map05165

Pfam Domains

Protein Families

Bap31

Protein Analysis

121

Amino Acids

13.35

Weight (kDa)

7.07

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49300 AT1G49300 AT3G18820
fragaria_vesca	FvH4_2g08630 FvH4_6g31570
malus_domestica	MD05G1067800.v1.1 MD10G1077700.v1.1 MD15G1318800.v1.1 MD17G1193300.v1.1
prunus_persica	Prupe.3G068700_v2.0.a1 Prupe.3G068700_v2.0.a1 Prupe.8G098400_v2.0.a1
pyrus_communis	pycom05g05870 pycom09g12780 pycom10g06060 pycom17g19930
rosa_chinensis	RchiOBHm_Chr2g0138641 RchiOBHm_Chr6g0263971
rosa_laevigata	RLG00000014297 RLG00000019749
rosa_multiflora	Rmu_ssc0000210.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431370 Rroxscaffold_2G00106040 Rroxscaffold_7G00203650
rosa_rugosa	Rorug02G0351900 Rorug02G0351900 Rorug06G0007200
rosa_samantha	Rh2AG401100 Rh2BG406300 Rh2CG387200 Rh2DG421400
rosa_wichuraiana	Rw2G032610 Rw6G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	304
AclWI	GGATC	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	221
AhdI	GACNNNNNGTC	1 cut(s)	340
AluBI	AGCT	2 cut(s)	129, 347
AluI	AGCT	2 cut(s)	129, 347
Alw26I	GTCTC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	59, 296
AsuHPI	GGTGA	2 cut(s)	35, 299
BbsI	GAAGAC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	46, 308
BccI	CCATC	1 cut(s)	23
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	354
BisI	GCNGC	2 cut(s)	60, 297
BlsI	GCNGC	2 cut(s)	61, 298
BmeRI	GACNNNNNGTC	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	46, 308
BsgI	GTGCAG	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	165, 349
Bsp19I	CCATGG	1 cut(s)	283
BspACI	CCGC	1 cut(s)	304
BspPI	GGATC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	2 cut(s)	165, 349
BssT1I	CCWWGG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	283
BstKTI	GATC	2 cut(s)	168, 352
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	2 cut(s)	165, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 305
BstNSI	RCATGY	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	46, 308
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	306
CviAII	CATG	2 cut(s)	222, 284
CviJI	RGCY	4 cut(s)	129, 186, 231, 347
CviKI_1	RGCY	4 cut(s)	129, 186, 231, 347
DpnI	GATC	2 cut(s)	167, 351
DpnII	GATC	2 cut(s)	165, 349
DriI	GACNNNNNGTC	1 cut(s)	340
Eam1105I	GACNNNNNGTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	2 cut(s)	225, 287
FaiI	YATR	6 cut(s)	183, 215, 223, 247, 285, 320
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FatI	CATG	2 cut(s)	221, 283
FauI	CCCGC	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	60, 297
Fsp4HI	GCNGC	2 cut(s)	60, 297
GluI	GCNGC	2 cut(s)	60, 297
Hin1II	CATG	2 cut(s)	225, 287
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HpaI	GTTAAC	1 cut(s)	219
HphI	GGTGA	2 cut(s)	35, 299
Hpy166II	GTNNAC	3 cut(s)	82, 146, 219
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	3 cut(s)	82, 146, 219
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4V	TGCA	4 cut(s)	62, 101, 249, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 305
Hsp92II	CATG	2 cut(s)	225, 287
Ksp22I	TGATCA	1 cut(s)	349
KspAI	GTTAAC	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	165, 349
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	4 cut(s)	90, 148, 249, 338
Lsp1109I	GCAGC	2 cut(s)	46, 308
MaeIII	GTNAC	2 cut(s)	68, 287
MalI	GATC	2 cut(s)	167, 351
MboI	GATC	2 cut(s)	165, 349
MboII	GAAGA	4 cut(s)	38, 101, 126, 160
MflI	RGATCY	1 cut(s)	165
MluCI	AATT	1 cut(s)	324
MnlI	CCTC	3 cut(s)	14, 199, 349
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	2 cut(s)	282, 317
MspA1I	CMGCKG	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	159, 305
NcoI	CCATGG	1 cut(s)	283
NdeII	GATC	2 cut(s)	165, 349
NlaIII	CATG	2 cut(s)	225, 287
NmuCI	GTSAC	1 cut(s)	287
NspI	RCATGY	1 cut(s)	225
PciI	ACATGT	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	61, 298
PscI	ACATGT	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	165
PvuII	CAGCTG	1 cut(s)	347
RseI	CAYNNNNRTG	2 cut(s)	282, 317
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	2 cut(s)	60, 297
Sau3AI	GATC	2 cut(s)	165, 349
SetI	ASST	4 cut(s)	25, 131, 344, 349
SmiMI	CAYNNNNRTG	2 cut(s)	282, 317
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	1 cut(s)	324
SsiI	CCGC	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	1 cut(s)	293
TasI	AATT	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	2 cut(s)	59, 296
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	186, 266
TspRI	CASTG	1 cut(s)	84
XceI	RCATGY	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.