Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003997

Physical Location & Seq

Genomic Coordinates Reverse (-)

11341878 .. 11345176

Gene Structure 3299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12780.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTTCTCGTAGGCGCATGCTTCTAAAGGTCATTATCCTCGGCGACAGCGGGGTCGGGAAGACTTCACTGATGAATCAGTATGTGAATCGTAAGTTTAGCAATCAGTACAAAGCTACAATTGGAGCCGATTTTCTGACCAAGGAGGTTCAATTTGAGGATAGATTGTTCACTCTGCAGATCTGGGATACCGCTGGTCAAGAAAGGTTTCAGAGTCTTGGTGTGGCGTTCTATCGTGGTGCAGATTGCTGTGTTCTTGTGTACGATGTGAATGTCATGAAATCATTTGATAATCTTAATAACTGGAGGGAAGAATTTCTGATTCAGGCCAGTCCTTCTGACCCTGAGAACTTCCCATTTGTTGTATTGGGAAACAAGATCGACGTTGATGGCGGAAATAGTCGAGTGGTGTCTGAAAAGAAAGCAAAGGCCTGGTGTGCTTCCAAGGGAAACATACCATACTTTGAGACTTCTGCAAAAGAGGGCTTCAATGTAGATGATGCCTTCCAGTGTATAGCGAAAAATGCACTGAAGAATGAACCTGAAGAAGAAATATACCTTCCGGACACAATCGATGTTGGTAGCGGAGGGAGGCAGCAAAGATCTACTGGCTGTGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04137 ko04138 ko04140 ko04144 ko04145 ko05132 ko05146 ko05152 map04137 map04138 map04140 map04144 map04145 map05132 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

208

Amino Acids

23.24

Weight (kDa)

5.21

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49300 AT1G49300 AT3G18820
fragaria_vesca	FvH4_2g08630 FvH4_6g31570
malus_domestica	MD05G1067800.v1.1 MD10G1077700.v1.1 MD15G1318800.v1.1 MD17G1193300.v1.1
prunus_persica	Prupe.3G068700_v2.0.a1 Prupe.3G068700_v2.0.a1 Prupe.8G098400_v2.0.a1
pyrus_communis	pycom05g05870 pycom09g12780 pycom10g06060 pycom17g19930
rosa_chinensis	RchiOBHm_Chr2g0138641 RchiOBHm_Chr6g0263971
rosa_laevigata	RLG00000014297 RLG00000019749
rosa_multiflora	Rmu_ssc0000210.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431370 Rroxscaffold_2G00106040 Rroxscaffold_7G00203650
rosa_rugosa	Rorug02G0351900 Rorug02G0351900 Rorug06G0007200
rosa_samantha	Rh2AG401100 Rh2BG406300 Rh2CG387200 Rh2DG421400
rosa_wichuraiana	Rw2G032610 Rw6G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
AccIII	TCCGGA	1 cut(s)	562
AciI	CCGC	4 cut(s)	51, 192, 393, 585
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	2 cut(s)	551, 564
AfaI	GTAC	2 cut(s)	110, 263
AgsI	TTSAA	2 cut(s)	152, 490
AjnI	CCWGG	1 cut(s)	431
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	461
Aor13HI	TCCGGA	1 cut(s)	562
AoxI	GGCC	2 cut(s)	327, 429
ApeKI	GCWGC	1 cut(s)	595
ApoI	RAATTY	1 cut(s)	314
Asp700I	GAANNNNTTC	2 cut(s)	207, 315
AspLEI	GCGC	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	607
BccI	CCATC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	433
BciVI	GTATCC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	461
BfmI	CTRYAG	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	181
BglII	AGATCT	2 cut(s)	180, 602
BisI	GCNGC	1 cut(s)	596
BlsI	GCNGC	1 cut(s)	597
Bme1390I	CCNGG	1 cut(s)	433
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	433
BmsI	GCATC	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	325
Bsa29I	ATCGAT	1 cut(s)	573
BsaJI	CCNNGG	3 cut(s)	40, 141, 444
BsaWI	WCCGGW	1 cut(s)	562
Bse1I	ACTGG	4 cut(s)	308, 330, 508, 613
BseAI	TCCGGA	1 cut(s)	562
BseBI	CCWGG	1 cut(s)	433
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	3 cut(s)	40, 141, 444
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	4 cut(s)	308, 330, 508, 613
BseXI	GCAGC	1 cut(s)	607
BsgI	GTGCAG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	329, 431
BshVI	ATCGAT	1 cut(s)	573
BsiSI	CCGG	1 cut(s)	563
BsmAI	GTCTC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	329, 431
Bsp13I	TCCGGA	1 cut(s)	562
Bsp143I	GATC	3 cut(s)	180, 378, 602
BspACI	CCGC	4 cut(s)	51, 192, 393, 585
BspANI	GGCC	2 cut(s)	329, 431
BspCNI	CTCAG	1 cut(s)	337
BspDI	ATCGAT	1 cut(s)	573
BspEI	TCCGGA	1 cut(s)	562
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	180
BsrI	ACTGG	4 cut(s)	308, 330, 508, 613
BssECI	CCNNGG	3 cut(s)	40, 141, 444
BssMI	GATC	3 cut(s)	180, 378, 602
BssT1I	CCWWGG	2 cut(s)	141, 444
Bst2UI	CCWGG	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	3 cut(s)	183, 381, 605
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	3 cut(s)	180, 378, 602
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 524
BstNI	CCWGG	1 cut(s)	433
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	431
BstSFI	CTRYAG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	607
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	2 cut(s)	180, 602
BstYI	RGATCY	2 cut(s)	180, 602
Bsu15I	ATCGAT	1 cut(s)	573
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	329, 431
BsuTUI	ATCGAT	1 cut(s)	573
BtsIMutI	CAGTG	3 cut(s)	68, 515, 527
Cac8I	GCNNGC	1 cut(s)	20
CciI	TCATGA	1 cut(s)	276
CfoI	GCGC	1 cut(s)	18
ClaI	ATCGAT	1 cut(s)	573
Csp6I	GTAC	2 cut(s)	109, 262
CviAII	CATG	2 cut(s)	19, 277
CviJI	RGCY	7 cut(s)	5, 116, 128, 329, 431, 486, 612
CviKI_1	RGCY	7 cut(s)	5, 116, 128, 329, 431, 486, 612
CviQI	GTAC	2 cut(s)	109, 262
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	3 cut(s)	182, 380, 604
DpnII	GATC	3 cut(s)	180, 378, 602
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	408
Eco130I	CCWWGG	2 cut(s)	141, 444
Eco147I	AGGCCT	1 cut(s)	431
Eco57I	CTGAAG	2 cut(s)	551, 564
EcoRII	CCWGG	1 cut(s)	431
EcoT14I	CCWWGG	2 cut(s)	141, 444
ErhI	CCWWGG	2 cut(s)	141, 444
FaeI	CATG	2 cut(s)	22, 280
FaiI	YATR	7 cut(s)	20, 84, 278, 455, 460, 515, 556
FatI	CATG	2 cut(s)	18, 276
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	596
Fsp4HI	GCNGC	1 cut(s)	596
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	1 cut(s)	596
GsuI	CTGGAG	1 cut(s)	325
HaeIII	GGCC	2 cut(s)	329, 431
HapII	CCGG	1 cut(s)	563
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	2 cut(s)	22, 280
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HinfI	GANTC	4 cut(s)	76, 88, 214, 322
HpaII	CCGG	1 cut(s)	563
Hpy166II	GTNNAC	2 cut(s)	171, 262
Hpy188I	TCNGA	5 cut(s)	138, 213, 321, 340, 415
Hpy188III	TCNNGA	4 cut(s)	58, 200, 277, 563
Hpy8I	GTNNAC	2 cut(s)	171, 262
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	3 cut(s)	345, 514, 569
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	4 cut(s)	178, 242, 476, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 524
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	22, 280
HspAI	GCGC	1 cut(s)	16
Kpn2I	TCCGGA	1 cut(s)	562
Kzo9I	GATC	3 cut(s)	180, 378, 602
LmnI	GCTCC	1 cut(s)	125
Lsp1109I	GCAGC	1 cut(s)	607
LweI	GCATC	1 cut(s)	490
MaeII	ACGT	1 cut(s)	384
MalI	GATC	3 cut(s)	182, 380, 604
MboI	GATC	3 cut(s)	180, 378, 602
MboII	GAAGA	5 cut(s)	73, 323, 544, 557, 560
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	2 cut(s)	180, 602
MluCI	AATT	3 cut(s)	120, 152, 314
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	7 cut(s)	50, 139, 151, 300, 475, 581, 585
MroI	TCCGGA	1 cut(s)	562
MroXI	GAANNNNTTC	2 cut(s)	207, 315
MseI	TTAA	1 cut(s)	297
MspA1I	CMGCKG	2 cut(s)	51, 194
MspI	CCGG	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	433
MunI	CAATTG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	437, 524
NdeII	GATC	3 cut(s)	180, 378, 602
NlaIII	CATG	2 cut(s)	22, 280
NlaIV	GGNNCC	1 cut(s)	127
NmeAIII	GCCGAG	1 cut(s)	21
NspI	RCATGY	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	22
PagI	TCATGA	1 cut(s)	276
PceI	AGGCCT	1 cut(s)	431
PdmI	GAANNNNTTC	2 cut(s)	207, 315
PfeI	GAWTC	3 cut(s)	76, 88, 322
PkrI	GCNGC	1 cut(s)	597
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	180
PsuI	RGATCY	2 cut(s)	180, 602
RsaI	GTAC	2 cut(s)	110, 263
RsaNI	GTAC	2 cut(s)	109, 262
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	596
Sau3AI	GATC	3 cut(s)	180, 378, 602
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	433
SetI	ASST	7 cut(s)	33, 118, 150, 209, 387, 544, 561
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	1 cut(s)	176
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	3 cut(s)	120, 152, 314
SseBI	AGGCCT	1 cut(s)	431
SsiI	CCGC	4 cut(s)	51, 192, 393, 585
StuI	AGGCCT	1 cut(s)	431
StyD4I	CCNGG	1 cut(s)	431
StyI	CCWWGG	2 cut(s)	141, 444
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	3 cut(s)	381, 403, 573
TasI	AATT	3 cut(s)	120, 152, 314
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	3 cut(s)	76, 88, 322
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	3 cut(s)	75, 515, 534
TseI	GCWGC	1 cut(s)	595
TspDTI	ATGAA	3 cut(s)	89, 293, 552
TspRI	CASTG	3 cut(s)	75, 515, 534
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	1 cut(s)	22
XmnI	GAANNNNTTC	2 cut(s)	207, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.