Rh2BG406300

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003997
Physical Location & Seq
Reverse (-)
57518544 .. 57524392
5849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG406300.1

Sequence Viewer

Length: 558 bp
ATGGCTTCTCGCAGACGCATGCTTCTAAAGGTCATTATCCTCGGCGACAGCGGGGTGGGGAAGACATCGCTTATGAATCAGTATGTGAATCGTAAGTTTAGTAATCAGTACAAGGCGACAATCGGAGCGGATTTTCTGACCAAGGAGGTTCAGTTTGAAGATAGGTTGTTCACATTGCAGATTTGGGATACTGCTGGACAAGAAAGGTTTCAAAGTCTTGGTGTGGCTTTCTATCGTGGTGCAGATTGTTGTGTGCTTGTGTATGATGTGAATGTCATGAAATCATTTGATAATCTTAACAACTGGAGAGAAGAATTTCTGATTCAGGCCAGTCCATCCGATCCCGAGAACTTTCCATTCGTTGTGTTGGGGAACAAGATTGATGTTGATGGTGGAAATAGTCGAGTGGTTTCTGAAAAGAAAGCGAAGGCTTGGTGTGCTTCCAAGGGAAACATACCATACTTTGAGACTTCTGCAAAAGAAGGCTTTAACGTGGATGATGCCTTCCAATGTATAGCGAAAAACGCACTGAAGAATGAACCTGAAGAAGAAATGTAA

Protein Analysis

185

Amino Acids

20.94

Weight (kDa)

5.35

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 7 - 174 3.7e-13 ADP-ribosylation factor family
Ras PF00071 10 - 176 5.2e-55 Ras family
Roc PF08477 10 - 128 6e-33 Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1 PF01926 10 - 106 3e-07 50S ribosome-binding GTPase
GTP_EFTU PF00009 47 - 174 2.4e-06 Elongation factor Tu GTP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 128
AciI CCGC 2 cut(s) 51, 128
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 1 cut(s) 314
AcuI CTGAAG 1 cut(s) 551
AfaI GTAC 1 cut(s) 110
AgsI TTSAA 2 cut(s) 158, 212
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 1 cut(s) 327
ApoI RAATTY 1 cut(s) 314
Asp700I GAANNNNTTC 2 cut(s) 207, 315
AvaI CYCGRG 1 cut(s) 344
BbsI GAAGAC 1 cut(s) 68
BccI CCATC 2 cut(s) 343, 383
BciVI GTATCC 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 461
BfuI GTATCC 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 344
BmsI GCATC 1 cut(s) 490
BpiI GAAGAC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 325
BsaJI CCNNGG 3 cut(s) 40, 141, 444
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bse1I ACTGG 2 cut(s) 308, 330
Bse3DI GCAATG 1 cut(s) 173
BseDI CCNNGG 3 cut(s) 40, 141, 444
BseGI GGATG 2 cut(s) 335, 502
BseMI GCAATG 1 cut(s) 173
BseNI ACTGG 2 cut(s) 308, 330
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 461
BsnI GGCC 1 cut(s) 329
BsoBI CYCGRG 1 cut(s) 344
Bsp143I GATC 1 cut(s) 340
BspACI CCGC 2 cut(s) 51, 128
BspANI GGCC 1 cut(s) 329
BspHI TCATGA 1 cut(s) 276
BspPI GGATC 1 cut(s) 335
BsrBI CCGCTC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 173
BsrI ACTGG 2 cut(s) 308, 330
BssECI CCNNGG 3 cut(s) 40, 141, 444
BssMI GATC 1 cut(s) 340
BssT1I CCWWGG 2 cut(s) 141, 444
BstC8I GCNNGC 1 cut(s) 20
BstF5I GGATG 2 cut(s) 335, 502
BstKTI GATC 1 cut(s) 343
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 2 cut(s) 437, 524
BstNSI RCATGY 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 68
BsuI GTATCC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 329
BtgZI GCGATG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 335, 502
BtsIMutI CAGTG 1 cut(s) 527
Cac8I GCNNGC 1 cut(s) 20
CciI TCATGA 1 cut(s) 276
CseI GACGC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 109
CviAII CATG 2 cut(s) 19, 277
CviJI RGCY 5 cut(s) 5, 227, 329, 431, 486
CviKI_1 RGCY 5 cut(s) 5, 227, 329, 431, 486
CviQI GTAC 1 cut(s) 109
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
Eco130I CCWWGG 2 cut(s) 141, 444
Eco57I CTGAAG 1 cut(s) 551
Eco88I CYCGRG 1 cut(s) 344
EcoT14I CCWWGG 2 cut(s) 141, 444
ErhI CCWWGG 2 cut(s) 141, 444
FaeI CATG 2 cut(s) 22, 280
FaiI YATR 8 cut(s) 20, 74, 84, 264, 278, 455, 460, 515
FatI CATG 2 cut(s) 18, 276
FauI CCCGC 1 cut(s) 44
FokI GGATG 2 cut(s) 322, 509
GsuI CTGGAG 1 cut(s) 325
HaeIII GGCC 1 cut(s) 329
HgaI GACGC 1 cut(s) 24
Hin1II CATG 2 cut(s) 22, 280
HinfI GANTC 3 cut(s) 76, 88, 322
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 5 cut(s) 125, 138, 321, 340, 415
Hpy188III TCNNGA 2 cut(s) 277, 344
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 3 cut(s) 421, 476, 514
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 3 cut(s) 178, 242, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 524
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 2 cut(s) 22, 280
Kzo9I GATC 1 cut(s) 340
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 4 cut(s) 180, 289, 311, 343
LweI GCATC 1 cut(s) 490
MaeII ACGT 1 cut(s) 492
MalI GATC 1 cut(s) 342
MbiI CCGCTC 1 cut(s) 128
MboI GATC 1 cut(s) 340
MboII GAAGA 5 cut(s) 73, 170, 323, 544, 557
MluCI AATT 1 cut(s) 314
MnlI CCTC 2 cut(s) 50, 139
MroXI GAANNNNTTC 2 cut(s) 207, 315
MseI TTAA 2 cut(s) 297, 489
MspA1I CMGCKG 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 437, 524
NdeII GATC 1 cut(s) 340
NlaIII CATG 2 cut(s) 22, 280
NmeAIII GCCGAG 1 cut(s) 21
NspI RCATGY 1 cut(s) 22
PaeI GCATGC 1 cut(s) 22
PagI TCATGA 1 cut(s) 276
PdmI GAANNNNTTC 2 cut(s) 207, 315
PfeI GAWTC 3 cut(s) 76, 88, 322
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SaqAI TTAA 2 cut(s) 297, 489
Sau3AI GATC 1 cut(s) 340
SetI ASST 6 cut(s) 33, 150, 167, 209, 495, 544
SfaNI GCATC 1 cut(s) 490
SphI GCATGC 1 cut(s) 22
Sse9I AATT 1 cut(s) 314
SsiI CCGC 2 cut(s) 51, 128
StyI CCWWGG 2 cut(s) 141, 444
TaiI ACGT 1 cut(s) 495
TaqI TCGA 1 cut(s) 403
TasI AATT 1 cut(s) 314
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 3 cut(s) 76, 88, 322
Tru1I TTAA 2 cut(s) 297, 489
Tru9I TTAA 2 cut(s) 297, 489
TscAI CASTG 1 cut(s) 534
TspDTI ATGAA 3 cut(s) 89, 293, 552
TspRI CASTG 1 cut(s) 534
XapI RAATTY 1 cut(s) 314
XceI RCATGY 1 cut(s) 22
XmnI GAANNNNTTC 2 cut(s) 207, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.