Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000210.1

Orthogroup ID

OG0003997

Physical Location & Seq

Genomic Coordinates Forward (+)

29486 .. 32938

Gene Structure 3453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000210.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggcttctcgcagacgcatgcttctaaaggtcattatcctcggcgacagcggggtggggaagacatcgcttatgaatcagtatgtgaatcgtaagtttagtaatcagtacaaggcgacaatcggagcggattttctgaccaaggaggttcagtttgaagataggttgttcacattgcagatttgggatactgctggacaagaaaggtttcaaagtcttggtgtggctttctatcgtggtgcagattgttgtgtgcttgtgtatgatgtgaatgtcatgaaatcatttgataatcttaacaactggagagaagaatttctgattcaggccagtccatccgatcccgagaactttccattcgttgtgttggggaacaagattgatgttgatggtggaaatagtcgagtggtttctgaaaagaaagcgaaggcttggtgtgcttccaagggaaacataccatactttgagacttctgcaaaagaaggctttaacgtggatgatgccttccaatgtatagcgaaaaacgcactgaagaatgaacctgaagaagaaatataccttcctgacacaatcgatgttgccggtggagggaggcagcaaagatctactggttgtgaatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04137 ko04138 ko04140 ko04144 ko04145 ko05132 ko05146 ko05152 map04137 map04138 map04140 map04144 map04145 map05132 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

207

Amino Acids

23.23

Weight (kDa)

5.21

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49300 AT1G49300 AT3G18820
fragaria_vesca	FvH4_2g08630 FvH4_6g31570
malus_domestica	MD05G1067800.v1.1 MD10G1077700.v1.1 MD15G1318800.v1.1 MD17G1193300.v1.1
prunus_persica	Prupe.3G068700_v2.0.a1 Prupe.3G068700_v2.0.a1 Prupe.8G098400_v2.0.a1
pyrus_communis	pycom05g05870 pycom09g12780 pycom10g06060 pycom17g19930
rosa_chinensis	RchiOBHm_Chr2g0138641 RchiOBHm_Chr6g0263971
rosa_laevigata	RLG00000014297 RLG00000019749
rosa_multiflora	Rmu_ssc0000210.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431370 Rroxscaffold_2G00106040 Rroxscaffold_7G00203650
rosa_rugosa	Rorug02G0351900 Rorug02G0351900 Rorug06G0007200
rosa_samantha	Rh2AG401100 Rh2BG406300 Rh2CG387200 Rh2DG421400
rosa_wichuraiana	Rw2G032610 Rw6G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	128
AciI	CCGC	2 cut(s)	51, 128
AclWI	GGATC	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	2 cut(s)	551, 564
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	588
AgsI	TTSAA	2 cut(s)	158, 212
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	595
ApoI	RAATTY	1 cut(s)	314
Asp700I	GAANNNNTTC	2 cut(s)	207, 315
AvaI	CYCGRG	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	607
BccI	CCATC	2 cut(s)	343, 383
BciVI	GTATCC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	461
BfuI	GTATCC	1 cut(s)	181
BglII	AGATCT	1 cut(s)	602
BisI	GCNGC	1 cut(s)	596
BlsI	GCNGC	1 cut(s)	597
BmeT110I	CYCGRG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	325
Bsa29I	ATCGAT	1 cut(s)	573
BsaJI	CCNNGG	3 cut(s)	40, 141, 444
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	1 cut(s)	588
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	3 cut(s)	308, 330, 613
Bse3DI	GCAATG	1 cut(s)	173
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	3 cut(s)	40, 141, 444
BseGI	GGATG	2 cut(s)	335, 502
BseLI	CCNNNNNNNGG	1 cut(s)	588
BseMI	GCAATG	1 cut(s)	173
BseNI	ACTGG	3 cut(s)	308, 330, 613
BseXI	GCAGC	1 cut(s)	607
BsgI	GTGCAG	1 cut(s)	261
BshFI	GGCC	1 cut(s)	329
BshVI	ATCGAT	1 cut(s)	573
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	588
BsmAI	GTCTC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	329
BsoBI	CYCGRG	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	340, 602
BspACI	CCGC	2 cut(s)	51, 128
BspANI	GGCC	1 cut(s)	329
BspDI	ATCGAT	1 cut(s)	573
BspHI	TCATGA	1 cut(s)	276
BspPI	GGATC	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	3 cut(s)	308, 330, 613
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	3 cut(s)	40, 141, 444
BssMI	GATC	2 cut(s)	340, 602
BssT1I	CCWWGG	2 cut(s)	141, 444
BstC8I	GCNNGC	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	335, 502
BstKTI	GATC	2 cut(s)	343, 605
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	2 cut(s)	340, 602
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 524
BstNSI	RCATGY	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	607
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	602
BstYI	RGATCY	1 cut(s)	602
Bsu15I	ATCGAT	1 cut(s)	573
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	329
BsuTUI	ATCGAT	1 cut(s)	573
BtgZI	GCGATG	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	335, 502
BtsIMutI	CAGTG	1 cut(s)	527
Cac8I	GCNNGC	1 cut(s)	20
CciI	TCATGA	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	581
ClaI	ATCGAT	1 cut(s)	573
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	2 cut(s)	19, 277
CviJI	RGCY	5 cut(s)	5, 227, 329, 431, 486
CviKI_1	RGCY	5 cut(s)	5, 227, 329, 431, 486
CviQI	GTAC	1 cut(s)	109
DpnI	GATC	2 cut(s)	342, 604
DpnII	GATC	2 cut(s)	340, 602
Eco130I	CCWWGG	2 cut(s)	141, 444
Eco57I	CTGAAG	2 cut(s)	551, 564
Eco88I	CYCGRG	1 cut(s)	344
EcoT14I	CCWWGG	2 cut(s)	141, 444
ErhI	CCWWGG	2 cut(s)	141, 444
FaeI	CATG	2 cut(s)	22, 280
FaiI	YATR	9 cut(s)	20, 74, 84, 264, 278, 455, 460, 515, 556
FatI	CATG	2 cut(s)	18, 276
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	596
FokI	GGATG	2 cut(s)	322, 509
Fsp4HI	GCNGC	1 cut(s)	596
GluI	GCNGC	1 cut(s)	596
GsuI	CTGGAG	1 cut(s)	325
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	582
HgaI	GACGC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	22, 280
HinfI	GANTC	3 cut(s)	76, 88, 322
HpaII	CCGG	1 cut(s)	582
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	5 cut(s)	125, 138, 321, 340, 415
Hpy188III	TCNNGA	3 cut(s)	277, 344, 563
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	4 cut(s)	421, 476, 514, 569
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	3 cut(s)	178, 242, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 524
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	2 cut(s)	22, 280
Kzo9I	GATC	2 cut(s)	340, 602
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	8 cut(s)	180, 289, 311, 343, 555, 576, 594, 595
Lsp1109I	GCAGC	1 cut(s)	607
LweI	GCATC	1 cut(s)	490
MaeII	ACGT	1 cut(s)	492
MalI	GATC	2 cut(s)	342, 604
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	2 cut(s)	340, 602
MboII	GAAGA	6 cut(s)	73, 170, 323, 544, 557, 560
MflI	RGATCY	1 cut(s)	602
MluCI	AATT	1 cut(s)	314
MnlI	CCTC	4 cut(s)	50, 139, 581, 585
MroXI	GAANNNNTTC	2 cut(s)	207, 315
MseI	TTAA	2 cut(s)	297, 489
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	2 cut(s)	437, 524
NdeII	GATC	2 cut(s)	340, 602
NlaIII	CATG	2 cut(s)	22, 280
NmeAIII	GCCGAG	1 cut(s)	21
NspI	RCATGY	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	22
PagI	TCATGA	1 cut(s)	276
PdmI	GAANNNNTTC	2 cut(s)	207, 315
PfeI	GAWTC	3 cut(s)	76, 88, 322
PkrI	GCNGC	1 cut(s)	597
PsuI	RGATCY	1 cut(s)	602
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SaqAI	TTAA	2 cut(s)	297, 489
SatI	GCNGC	1 cut(s)	596
Sau3AI	GATC	2 cut(s)	340, 602
SetI	ASST	7 cut(s)	33, 150, 167, 209, 495, 544, 561
SfaNI	GCATC	1 cut(s)	490
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	1 cut(s)	314
SsiI	CCGC	2 cut(s)	51, 128
StyI	CCWWGG	2 cut(s)	141, 444
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	2 cut(s)	403, 573
TasI	AATT	1 cut(s)	314
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	3 cut(s)	76, 88, 322
Tru1I	TTAA	2 cut(s)	297, 489
Tru9I	TTAA	2 cut(s)	297, 489
TscAI	CASTG	1 cut(s)	534
TseI	GCWGC	1 cut(s)	595
TspDTI	ATGAA	3 cut(s)	89, 293, 552
TspRI	CASTG	1 cut(s)	534
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	1 cut(s)	22
XmnI	GAANNNNTTC	2 cut(s)	207, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.