FvH4_2g08630

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003997
Physical Location & Seq
Reverse (-)
7560072 .. 7563920
3849 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08630.t1

Sequence Viewer

Length: 621 bp
ATGCCGTCTCGGAGAAGAACGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGGGTTGGGAAGACTTCTTTGATGAATCAATATGTTAATAAGAAGTTCAGCAATCAATACAAGGCGACTATCGGAGCCGATTTTTTGACAAAAGAAGTGCAGTTTGAAGACAGGCTCTTCACCCTACAGATTTGGGATACCGCTGGTCAAGAACGGTTTCAAAGCCTTGGTGTAGCATTTTATCGCGGTGCTGATTGCTGTGTTCTTGTTTATGACGTTAATTCGATGAAATCTTTTGATAACCTTAACAACTGGAAGGAGGAGTTCCTTATTCAGGCTAGTCCTAATGATCCAGAAAACTTTCCATTTGTTGTTATTGGAAACAAGATTGATGTAGACGGTGGAAATAGTAGAGTGGTGTCGGAAAAAAAAGCTCGAGCTTGGTGTGCCTCAAAAGGAGACATTCCGTACTATGAAACCTCTGCCAAGGAAGGCATTAATGTGGAAGAAGCTTTCCAGTGCATAGCAAGGGATGCCCTGAAAAGTGGGGAAGAGGAGGAAATATACTTGCCGGATACCATTGATGTTGGAAGCAGCAATCAGCCGAGGTCAAGTGGATGCGAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04138 ko04140 ko04144 ko04145 ko05132 ko05146 ko05152 map04137 map04138 map04140 map04144 map04145 map05132 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

207

Amino Acids

23.08

Weight (kDa)

4.9

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 9 - 173 6.2e-13 ADP-ribosylation factor family
Ras PF00071 10 - 177 2.3e-56 Ras family
Roc PF08477 10 - 128 9e-34 Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1 PF01926 10 - 106 1.8e-07 50S ribosome-binding GTPase
Gtr1_RagA PF04670 10 - 129 3.3e-06 Gtr1/RagA G protein conserved region
GTP_EFTU PF00009 46 - 172 1.5e-06 Elongation factor Tu GTP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 387
AccII CGCG 1 cut(s) 237
AciI CCGC 3 cut(s) 51, 192, 237
AclWI GGATC 1 cut(s) 335
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 2 cut(s) 158, 212
AluBI AGCT 3 cut(s) 425, 431, 503
AluI AGCT 3 cut(s) 425, 431, 503
Alw26I GTCTC 2 cut(s) 12, 444
AlwI GGATC 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 426
ApeKI GCWGC 1 cut(s) 585
AseI ATTAAT 1 cut(s) 489
Asp700I GAANNNNTTC 2 cut(s) 207, 351
AsuHPI GGTGA 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 426
BbsI GAAGAC 2 cut(s) 68, 165
BbvI GCAGC 1 cut(s) 597
BciVI GTATCC 2 cut(s) 181, 559
BcoDI GTCTC 2 cut(s) 12, 444
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 176
BfuI GTATCC 2 cut(s) 181, 559
BisI GCNGC 1 cut(s) 586
BlsI GCNGC 1 cut(s) 587
BmeT110I CYCGRG 1 cut(s) 426
BmiI GGNNCC 1 cut(s) 127
BmsI GCATC 2 cut(s) 514, 599
BpiI GAAGAC 2 cut(s) 68, 165
BpuEI CTTGAG 1 cut(s) 11
BsaJI CCNNGG 4 cut(s) 40, 217, 477, 596
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse1I ACTGG 2 cut(s) 308, 508
BseDI CCNNGG 4 cut(s) 40, 217, 477, 596
BseGI GGATG 3 cut(s) 36, 529, 614
BseLI CCNNNNNNNGG 1 cut(s) 325
BseNI ACTGG 2 cut(s) 308, 508
BseRI GAGGAG 3 cut(s) 14, 326, 560
BseXI GCAGC 1 cut(s) 597
BsgI GTGCAG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 426
BsiSI CCGG 1 cut(s) 563
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 2 cut(s) 12, 444
BsmBI CGTCTC 1 cut(s) 12
BsoBI CYCGRG 1 cut(s) 426
Bsp143I GATC 1 cut(s) 340
BspACI CCGC 3 cut(s) 51, 192, 237
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 127
BspPI GGATC 1 cut(s) 335
BspQI GCTCTTC 1 cut(s) 173
BsrI ACTGG 2 cut(s) 308, 508
BssECI CCNNGG 4 cut(s) 40, 217, 477, 596
BssMI GATC 1 cut(s) 340
BssT1I CCWWGG 2 cut(s) 217, 477
Bst4CI ACNGT 2 cut(s) 207, 392
Bst6I CTCTTC 2 cut(s) 173, 537
BstAPI GCANNNNNTGC 1 cut(s) 524
BstENI CCTNNNNNAGG 1 cut(s) 323
BstF5I GGATG 3 cut(s) 36, 529, 614
BstFNI CGCG 1 cut(s) 237
BstKTI GATC 1 cut(s) 343
BstMAI GTCTC 2 cut(s) 12, 444
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 2 cut(s) 437, 524
BstSFI CTRYAG 1 cut(s) 176
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 597
BstV2I GAAGAC 2 cut(s) 68, 165
BsuI GTATCC 2 cut(s) 181, 559
BtsCI GGATG 3 cut(s) 36, 529, 614
BtsIMutI CAGTG 1 cut(s) 515
Csp6I GTAC 1 cut(s) 460
CviJI RGCY 8 cut(s) 128, 166, 216, 329, 425, 431, 503, 595
CviKI_1 RGCY 8 cut(s) 128, 166, 216, 329, 425, 431, 503, 595
CviQI GTAC 1 cut(s) 460
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
Eam1104I CTCTTC 2 cut(s) 173, 537
EarI CTCTTC 2 cut(s) 173, 537
Eco130I CCWWGG 2 cut(s) 217, 477
Eco88I CYCGRG 1 cut(s) 426
EcoNI CCTNNNNNAGG 1 cut(s) 323
EcoT14I CCWWGG 2 cut(s) 217, 477
ErhI CCWWGG 2 cut(s) 217, 477
Esp3I CGTCTC 1 cut(s) 12
FaiI YATR 5 cut(s) 84, 264, 465, 515, 556
FauI CCCGC 1 cut(s) 44
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 1 cut(s) 586
FokI GGATG 2 cut(s) 23, 536
Fsp4HI GCNGC 1 cut(s) 586
FspBI CTAG 1 cut(s) 330
GluI GCNGC 1 cut(s) 586
HapII CCGG 1 cut(s) 563
HindIII AAGCTT 1 cut(s) 501
HinfI GANTC 1 cut(s) 76
HpaII CCGG 1 cut(s) 563
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 3 cut(s) 12, 125, 415
Hpy188III TCNNGA 2 cut(s) 200, 344
Hpy8I GTNNAC 1 cut(s) 388
HpyAV CCTTC 2 cut(s) 301, 476
HpyCH4III ACNGT 2 cut(s) 207, 392
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 2 cut(s) 151, 513
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 524
HpySE526I ACGT 1 cut(s) 267
Kzo9I GATC 1 cut(s) 340
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 2 cut(s) 27, 125
LpnPI CCDG 8 cut(s) 148, 180, 289, 311, 357, 521, 542, 576
Lsp1109I GCAGC 1 cut(s) 597
LweI GCATC 2 cut(s) 514, 599
MaeI CTAG 1 cut(s) 330
MaeII ACGT 1 cut(s) 267
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 6 cut(s) 27, 73, 160, 170, 509, 554
MluCI AATT 1 cut(s) 271
MmeI TCCRAC 2 cut(s) 393, 559
MnlI CCTC 8 cut(s) 35, 50, 304, 451, 481, 538, 541, 591
MroXI GAANNNNTTC 2 cut(s) 207, 351
MseI TTAA 4 cut(s) 87, 270, 297, 489
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 2 cut(s) 51, 194
MspI CCGG 1 cut(s) 563
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 437, 524
NdeII GATC 1 cut(s) 340
NlaIV GGNNCC 1 cut(s) 127
NmeAIII GCCGAG 2 cut(s) 21, 621
PaeR7I CTCGAG 1 cut(s) 426
PciSI GCTCTTC 1 cut(s) 173
PdmI GAANNNNTTC 2 cut(s) 207, 351
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 1 cut(s) 587
PshBI ATTAAT 1 cut(s) 489
PspN4I GGNNCC 1 cut(s) 127
PspXI VCTCGAGB 1 cut(s) 426
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
RseI CAYNNNNRTG 1 cut(s) 491
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 4 cut(s) 87, 270, 297, 489
SatI GCNGC 1 cut(s) 586
Sau3AI GATC 1 cut(s) 340
SetI ASST 8 cut(s) 33, 270, 297, 427, 433, 473, 505, 602
SfaNI GCATC 2 cut(s) 514, 599
SfcI CTRYAG 1 cut(s) 176
Sfr274I CTCGAG 1 cut(s) 426
SlaI CTCGAG 1 cut(s) 426
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 2 cut(s) 26, 426
SmoI CTYRAG 2 cut(s) 26, 426
Sse9I AATT 1 cut(s) 271
SsiI CCGC 3 cut(s) 51, 192, 237
SspMI CTAG 1 cut(s) 330
StyI CCWWGG 2 cut(s) 217, 477
TaaI ACNGT 2 cut(s) 207, 392
TaiI ACGT 1 cut(s) 270
TaqI TCGA 2 cut(s) 275, 427
TasI AATT 1 cut(s) 271
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 4 cut(s) 87, 270, 297, 489
Tru9I TTAA 4 cut(s) 87, 270, 297, 489
TscAI CASTG 1 cut(s) 515
TseI GCWGC 1 cut(s) 585
TspDTI ATGAA 3 cut(s) 89, 293, 480
TspGWI ACGGA 1 cut(s) 447
TspRI CASTG 1 cut(s) 515
VspI ATTAAT 1 cut(s) 489
XagI CCTNNNNNAGG 1 cut(s) 323
XhoI CTCGAG 1 cut(s) 426
XmiI GTMKAC 1 cut(s) 387
XmnI GAANNNNTTC 2 cut(s) 207, 351
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.