Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003997

Physical Location & Seq

Genomic Coordinates Forward (+)

18234679 .. 18237543

Gene Structure 2865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCCTTCTCGTAGAAGAACTCTCCTCAAAGTCATCATCCTCGGTGATAGCGGGGTTGGGAAGACTTCTTTAATGAATCAATATGTTAATAAGAAGTTCAGCAACCAGTATAAGGCAACTATTGGGGCTGATTTCTTGACTAAGGAAGTTCAATTTGAAGACCGGCTTTTCACTTTACAGATCTGGGACACAGCTGGTCAAGAAAGGTTTCAGAGTCTTGGTGTTGCGTTTTATCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTCAACTCCGCAAAATCATTCGAGGATCTCAACAACTGGAGGGAAGAGTTTCTGATCCAGGCAAGTCCTTCGGATCCAGAGAACTTTCCCTTTGTTGTTATCGGTAATAAGATCGATGTGGATGGTGGAAGCAGCCGGGTGGTATCAGAGAAGAAGGCTCGAGCTTGGTGTGCTTCGAAAGGAAACATTCCATACTATGAAACCTCAGCTAAAGTAGGCACCAATGTAGAAGACGCGTTCCTGTGCATAACTACGAACGCAATGAAGAGTGGAGAAGAGGAAGAAATGTACCTACCAGACACGATCGATGTCGGAACCAGCAATCCACAGAGGTCAACAGGATGTGAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

206

Amino Acids

22.98

Weight (kDa)

4.96

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 169	1.6e-12	ADP-ribosylation factor family
Ras	PF00071	10 - 176	4.7e-55	Ras family
Roc	PF08477	10 - 128	2.7e-33	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	10 - 107	1.5e-07	50S ribosome-binding GTPase
Gtr1_RagA	PF04670	10 - 129	2.6e-06	Gtr1/RagA G protein conserved region
GTP_EFTU	PF00009	46 - 169	9.1e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49300 AT1G49300 AT3G18820
fragaria_vesca	FvH4_2g08630 FvH4_6g31570
malus_domestica	MD05G1067800.v1.1 MD10G1077700.v1.1 MD15G1318800.v1.1 MD17G1193300.v1.1
prunus_persica	Prupe.3G068700_v2.0.a1 Prupe.3G068700_v2.0.a1 Prupe.8G098400_v2.0.a1
pyrus_communis	pycom05g05870 pycom09g12780 pycom10g06060 pycom17g19930
rosa_chinensis	RchiOBHm_Chr2g0138641 RchiOBHm_Chr6g0263971
rosa_laevigata	RLG00000014297 RLG00000019749
rosa_multiflora	Rmu_ssc0000210.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431370 Rroxscaffold_2G00106040 Rroxscaffold_7G00203650
rosa_rugosa	Rorug02G0351900 Rorug02G0351900 Rorug06G0007200
rosa_samantha	Rh2AG401100 Rh2BG406300 Rh2CG387200 Rh2DG421400
rosa_wichuraiana	Rw2G032610 Rw6G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	485
AccII	CGCG	1 cut(s)	503
AciI	CCGC	2 cut(s)	51, 276
AclWI	GGATC	4 cut(s)	300, 316, 335, 348
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	1 cut(s)	112
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	2 cut(s)	152, 158
AjnI	CCWGG	1 cut(s)	324
AloI	GAACNNNNNNTCC	2 cut(s)	574, 606
AluBI	AGCT	3 cut(s)	194, 431, 476
AluI	AGCT	3 cut(s)	194, 431, 476
AlwI	GGATC	4 cut(s)	300, 316, 335, 348
Ama87I	CYCGRG	1 cut(s)	426
ApeKI	GCWGC	1 cut(s)	399
Asp700I	GAANNNNTTC	2 cut(s)	207, 315
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	56
AsuII	TTCGAA	1 cut(s)	443
AvaI	CYCGRG	1 cut(s)	426
BamHI	GGATCC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	485
BbsI	GAAGAC	3 cut(s)	68, 165, 504
BbvCI	CCTCAGC	1 cut(s)	472
BbvI	GCAGC	1 cut(s)	411
BccI	CCATC	1 cut(s)	383
BcgI	CGANNNNNNTGC	2 cut(s)	318, 352
BciT130I	CCWGG	1 cut(s)	326
BcnI	CCSGG	1 cut(s)	404
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	1 cut(s)	400
BlsI	GCNGC	1 cut(s)	401
Bme1390I	CCNGG	2 cut(s)	326, 404
BmeT110I	CYCGRG	1 cut(s)	426
BmiI	GGNNCC	3 cut(s)	342, 487, 583
BmrFI	CCNGG	2 cut(s)	326, 404
BpiI	GAAGAC	3 cut(s)	68, 165, 504
BpmI	CTGGAG	1 cut(s)	325
Bpu10I	CCTNAGC	1 cut(s)	472
Bpu14I	TTCGAA	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	404
Bsa29I	ATCGAT	2 cut(s)	381, 573
BsaJI	CCNNGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	162
Bse1I	ACTGG	2 cut(s)	106, 308
Bse3DI	GCAATG	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	326
BseCI	ATCGAT	2 cut(s)	381, 573
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	3 cut(s)	36, 394, 614
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	106, 308
BseRI	GAGGAG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	411
Bsh1236I	CGCG	1 cut(s)	503
Bsh1285I	CGRYCG	1 cut(s)	573
BshNI	GGYRCC	1 cut(s)	485
BshVI	ATCGAT	2 cut(s)	381, 573
BsiEI	CGRYCG	1 cut(s)	573
BsiHKCI	CYCGRG	1 cut(s)	426
BsiSI	CCGG	2 cut(s)	163, 403
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	620
BsoBI	CYCGRG	1 cut(s)	426
Bsp119I	TTCGAA	1 cut(s)	443
Bsp143I	GATC	6 cut(s)	180, 292, 321, 340, 378, 570
BspACI	CCGC	2 cut(s)	51, 276
BspCNI	CTCAG	1 cut(s)	485
BspDI	ATCGAT	2 cut(s)	381, 573
BspFNI	CGCG	1 cut(s)	503
BspLI	GGNNCC	3 cut(s)	342, 487, 583
BspPI	GGATC	4 cut(s)	300, 316, 335, 348
BspT104I	TTCGAA	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	534
BsrFI	RCCGGY	1 cut(s)	162
BsrI	ACTGG	2 cut(s)	106, 308
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	6 cut(s)	180, 292, 321, 340, 378, 570
Bst2UI	CCWGG	1 cut(s)	326
Bst6I	CTCTTC	3 cut(s)	306, 527, 537
BstBI	TTCGAA	1 cut(s)	443
BstDEI	CTNAG	2 cut(s)	141, 472
BstF5I	GGATG	3 cut(s)	36, 394, 614
BstFNI	CGCG	1 cut(s)	503
BstKTI	GATC	6 cut(s)	183, 295, 324, 343, 381, 573
BstMBI	GATC	6 cut(s)	180, 292, 321, 340, 378, 570
BstMCI	CGRYCG	1 cut(s)	573
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	324, 402
BstUI	CGCG	1 cut(s)	503
BstV1I	GCAGC	1 cut(s)	411
BstV2I	GAAGAC	3 cut(s)	68, 165, 504
BstX2I	RGATCY	3 cut(s)	180, 292, 340
BstYI	RGATCY	3 cut(s)	180, 292, 340
Bsu15I	ATCGAT	2 cut(s)	381, 573
BsuTUI	ATCGAT	2 cut(s)	381, 573
BtsCI	GGATG	3 cut(s)	36, 394, 614
Cfr10I	RCCGGY	1 cut(s)	162
ClaI	ATCGAT	2 cut(s)	381, 573
CseI	GACGC	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	556
CviJI	RGCY	7 cut(s)	128, 166, 194, 402, 425, 431, 476
CviKI_1	RGCY	7 cut(s)	128, 166, 194, 402, 425, 431, 476
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	2 cut(s)	141, 472
DpnI	GATC	6 cut(s)	182, 294, 323, 342, 380, 572
DpnII	GATC	6 cut(s)	180, 292, 321, 340, 378, 570
Eam1104I	CTCTTC	3 cut(s)	306, 527, 537
EarI	CTCTTC	3 cut(s)	306, 527, 537
Eco88I	CYCGRG	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	324
FaiI	YATR	7 cut(s)	84, 111, 262, 264, 460, 465, 515
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	200
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	400
FokI	GGATG	2 cut(s)	23, 401
Fsp4HI	GCNGC	1 cut(s)	400
GluI	GCNGC	1 cut(s)	400
GsuI	CTGGAG	1 cut(s)	325
HapII	CCGG	2 cut(s)	163, 403
HgaI	GACGC	1 cut(s)	509
HincII	GTYRAC	2 cut(s)	271, 603
HindII	GTYRAC	2 cut(s)	271, 603
HinfI	GANTC	2 cut(s)	76, 214
HpaII	CCGG	2 cut(s)	163, 403
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	2 cut(s)	271, 603
Hpy188I	TCNGA	5 cut(s)	213, 321, 340, 415, 581
Hpy188III	TCNNGA	3 cut(s)	136, 200, 344
Hpy8I	GTNNAC	2 cut(s)	271, 603
HpyAV	CCTTC	3 cut(s)	15, 345, 415
HpyCH4V	TGCA	1 cut(s)	513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	2 cut(s)	141, 472
Kzo9I	GATC	6 cut(s)	180, 292, 321, 340, 378, 570
Lsp1109I	GCAGC	1 cut(s)	411
MalI	GATC	6 cut(s)	182, 294, 323, 342, 380, 572
MboI	GATC	6 cut(s)	180, 292, 321, 340, 378, 570
MboII	GAAGA	9 cut(s)	27, 73, 170, 323, 430, 509, 544, 554, 560
MflI	RGATCY	3 cut(s)	180, 292, 340
MluCI	AATT	1 cut(s)	152
MluI	ACGCGT	1 cut(s)	501
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	7 cut(s)	35, 50, 283, 300, 481, 538, 591
MroXI	GAANNNNTTC	2 cut(s)	207, 315
MseI	TTAA	2 cut(s)	71, 87
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	2 cut(s)	163, 403
MspR9I	CCNGG	2 cut(s)	326, 404
Mva1269I	GAATGC	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	503
MwoI	GCNNNNNNNGC	1 cut(s)	437
NciI	CCSGG	1 cut(s)	404
NdeII	GATC	6 cut(s)	180, 292, 321, 340, 378, 570
NlaIV	GGNNCC	3 cut(s)	342, 487, 583
NspV	TTCGAA	1 cut(s)	443
PaeR7I	CTCGAG	1 cut(s)	426
PctI	GAATGC	1 cut(s)	620
PdmI	GAANNNNTTC	2 cut(s)	207, 315
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	401
Ple19I	CGATCG	1 cut(s)	573
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	3 cut(s)	342, 487, 583
PspXI	VCTCGAGB	1 cut(s)	426
PsuI	RGATCY	3 cut(s)	180, 292, 340
PvuI	CGATCG	1 cut(s)	573
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
SaqAI	TTAA	2 cut(s)	71, 87
SatI	GCNGC	1 cut(s)	400
Sau3AI	GATC	6 cut(s)	180, 292, 321, 340, 378, 570
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	2 cut(s)	326, 404
SetI	ASST	7 cut(s)	196, 209, 433, 473, 478, 561, 602
Sfr274I	CTCGAG	1 cut(s)	426
SfuI	TTCGAA	1 cut(s)	443
SlaI	CTCGAG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	2 cut(s)	51, 276
StyD4I	CCNGG	2 cut(s)	324, 402
TaqI	TCGA	5 cut(s)	288, 381, 427, 443, 573
TasI	AATT	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	2 cut(s)	71, 87
Tru9I	TTAA	2 cut(s)	71, 87
TseI	GCWGC	1 cut(s)	399
TspDTI	ATGAA	3 cut(s)	89, 480, 545
XhoI	CTCGAG	1 cut(s)	426
XmnI	GAANNNNTTC	2 cut(s)	207, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.