Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003997

Physical Location & Seq

Genomic Coordinates Forward (+)

52845751 .. 52851243

Gene Structure 5493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG387200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTTCTCGCAGACGCATGCTTCTAAAGGTCATTATCCTCGGCGACAGCGGGGTGGGGAAGACATCGCTTATGAATCAGTATGTGAATCGTAAGTTTAGTAATCAGTACAAGGCGACAATCGGAGCAGATTTTCTGACCAAGGAGGTTCAGTTTGAAGATAGGTTGTTCACATTGCAGATTTGGGATACTGCTGGACAAGAAAGGTTTCAAAGTCTTGGTGTGGCTTTCTATCGTGGTGCAGATTGTTGTGTGCTTGTGTACGATGTGAATGTCATGAAATCATTTGATAATCTTAACAACTGGAGAGAAGAATTTCTGATTCAGGCCAGTCCATCCGATCCCGAGAACTTTCCATTCGTTGTGTTGGGGAACAAGATTGATGTTGATGGTGGAAATAGTCGAGTGGTTTCTGAAAAGAAAGCGAAGGCCTGGTGTGCTTCCAAGGGAAACATACCATACTTTGAGACCTCTGCAAAAGAAGGCTTTAACGTGGATGATGCCTTCCAATGTATAGCGAAAAACGCACTGAAGAATGAACCTGAAGAAGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04137 ko04138 ko04140 ko04144 ko04145 ko05132 ko05146 ko05152 map04137 map04138 map04140 map04144 map04145 map05132 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

185

Amino Acids

20.94

Weight (kDa)

5.35

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	7 - 174	3.7e-13	ADP-ribosylation factor family
Ras	PF00071	10 - 176	5.2e-55	Ras family
Roc	PF08477	10 - 128	6e-33	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	10 - 106	3e-07	50S ribosome-binding GTPase
GTP_EFTU	PF00009	47 - 174	2.4e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49300 AT1G49300 AT3G18820
fragaria_vesca	FvH4_2g08630 FvH4_6g31570
malus_domestica	MD05G1067800.v1.1 MD10G1077700.v1.1 MD15G1318800.v1.1 MD17G1193300.v1.1
prunus_persica	Prupe.3G068700_v2.0.a1 Prupe.3G068700_v2.0.a1 Prupe.8G098400_v2.0.a1
pyrus_communis	pycom05g05870 pycom09g12780 pycom10g06060 pycom17g19930
rosa_chinensis	RchiOBHm_Chr2g0138641 RchiOBHm_Chr6g0263971
rosa_laevigata	RLG00000014297 RLG00000019749
rosa_multiflora	Rmu_ssc0000210.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431370 Rroxscaffold_2G00106040 Rroxscaffold_7G00203650
rosa_rugosa	Rorug02G0351900 Rorug02G0351900 Rorug06G0007200
rosa_samantha	Rh2AG401100 Rh2BG406300 Rh2CG387200 Rh2DG421400
rosa_wichuraiana	Rw2G032610 Rw6G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	551
AfaI	GTAC	2 cut(s)	110, 263
AgsI	TTSAA	2 cut(s)	158, 212
AjnI	CCWGG	1 cut(s)	431
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	2 cut(s)	327, 429
ApoI	RAATTY	1 cut(s)	314
Asp700I	GAANNNNTTC	2 cut(s)	207, 315
AvaI	CYCGRG	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	68
BccI	CCATC	2 cut(s)	343, 383
BciT130I	CCWGG	1 cut(s)	433
BciVI	GTATCC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	461
BfuI	GTATCC	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	433
BmeT110I	CYCGRG	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	433
BmsI	GCATC	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	325
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	3 cut(s)	40, 141, 444
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bse1I	ACTGG	2 cut(s)	308, 330
Bse3DI	GCAATG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	3 cut(s)	40, 141, 444
BseGI	GGATG	2 cut(s)	335, 502
BseMI	GCAATG	1 cut(s)	173
BseNI	ACTGG	2 cut(s)	308, 330
BsgI	GTGCAG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	329, 431
BsiHKCI	CYCGRG	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	329, 431
Bso31I	GGTCTC	1 cut(s)	461
BsoBI	CYCGRG	1 cut(s)	344
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	2 cut(s)	329, 431
BspHI	TCATGA	1 cut(s)	276
BspPI	GGATC	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	308, 330
BssECI	CCNNGG	3 cut(s)	40, 141, 444
BssMI	GATC	1 cut(s)	340
BssT1I	CCWWGG	2 cut(s)	141, 444
Bst2UI	CCWGG	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	335, 502
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 524
BstNI	CCWGG	1 cut(s)	433
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	431
BstV2I	GAAGAC	1 cut(s)	68
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	329, 431
BtgZI	GCGATG	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	335, 502
BtsIMutI	CAGTG	1 cut(s)	527
Cac8I	GCNNGC	1 cut(s)	20
CciI	TCATGA	1 cut(s)	276
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	109, 262
CviAII	CATG	2 cut(s)	19, 277
CviJI	RGCY	5 cut(s)	5, 227, 329, 431, 486
CviKI_1	RGCY	5 cut(s)	5, 227, 329, 431, 486
CviQI	GTAC	2 cut(s)	109, 262
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Eco130I	CCWWGG	2 cut(s)	141, 444
Eco147I	AGGCCT	1 cut(s)	431
Eco31I	GGTCTC	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	551
Eco88I	CYCGRG	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	431
EcoT14I	CCWWGG	2 cut(s)	141, 444
ErhI	CCWWGG	2 cut(s)	141, 444
FaeI	CATG	2 cut(s)	22, 280
FaiI	YATR	7 cut(s)	20, 74, 84, 278, 455, 460, 515
FatI	CATG	2 cut(s)	18, 276
FauI	CCCGC	1 cut(s)	44
FokI	GGATG	2 cut(s)	322, 509
GsuI	CTGGAG	1 cut(s)	325
HaeIII	GGCC	2 cut(s)	329, 431
HgaI	GACGC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	22, 280
HinfI	GANTC	3 cut(s)	76, 88, 322
Hpy166II	GTNNAC	2 cut(s)	171, 262
Hpy188I	TCNGA	5 cut(s)	125, 138, 321, 340, 415
Hpy188III	TCNNGA	2 cut(s)	277, 344
Hpy8I	GTNNAC	2 cut(s)	171, 262
HpyAV	CCTTC	3 cut(s)	421, 476, 514
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	3 cut(s)	178, 242, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 524
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	2 cut(s)	22, 280
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	6 cut(s)	180, 289, 311, 343, 418, 445
LweI	GCATC	1 cut(s)	490
MaeII	ACGT	1 cut(s)	492
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	5 cut(s)	73, 170, 323, 544, 557
MluCI	AATT	1 cut(s)	314
MnlI	CCTC	3 cut(s)	50, 139, 481
MroXI	GAANNNNTTC	2 cut(s)	207, 315
MseI	TTAA	2 cut(s)	297, 489
MspA1I	CMGCKG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	433
MvaI	CCWGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	437, 524
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	2 cut(s)	22, 280
NmeAIII	GCCGAG	1 cut(s)	21
NspI	RCATGY	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	22
PagI	TCATGA	1 cut(s)	276
PceI	AGGCCT	1 cut(s)	431
PdmI	GAANNNNTTC	2 cut(s)	207, 315
PfeI	GAWTC	3 cut(s)	76, 88, 322
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
RsaI	GTAC	2 cut(s)	110, 263
RsaNI	GTAC	2 cut(s)	109, 262
SaqAI	TTAA	2 cut(s)	297, 489
Sau3AI	GATC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	433
SetI	ASST	7 cut(s)	33, 150, 167, 209, 473, 495, 544
SfaNI	GCATC	1 cut(s)	490
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	1 cut(s)	314
SseBI	AGGCCT	1 cut(s)	431
SsiI	CCGC	1 cut(s)	51
StuI	AGGCCT	1 cut(s)	431
StyD4I	CCNGG	1 cut(s)	431
StyI	CCWWGG	2 cut(s)	141, 444
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	1 cut(s)	403
TasI	AATT	1 cut(s)	314
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	3 cut(s)	76, 88, 322
Tru1I	TTAA	2 cut(s)	297, 489
Tru9I	TTAA	2 cut(s)	297, 489
TscAI	CASTG	1 cut(s)	534
TspDTI	ATGAA	3 cut(s)	89, 293, 552
TspRI	CASTG	1 cut(s)	534
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	1 cut(s)	22
XmnI	GAANNNNTTC	2 cut(s)	207, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.