Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003997

Physical Location & Seq

Genomic Coordinates Forward (+)

6484068 .. 6486264

Gene Structure 2197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCCGTCCCGTAGACGTACCCTCCTCAAGGTCATCATCCTCGGTGATAGCGGGGTGGGAAAAACCTCTTTGATGAATCAGTATGTTAATAAAAAGTTCAGCAACCAGTACAAGGCAACCATTGGAGCCGACTTCTTGACCAAGGAAGTACAGTTTGAAGATCGACTTTTCACTTTACAGATCTGGGATACAGCTGGACAGGAAAGGTTTCAGAGCCTTGGTGTAGCCTTTTACCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTCAATTCCATGAAATCATTTGAAAATCTGAACAACTGGAGGGAAGAATTTCTGATCCAGGCGAGTCCATCAGATCCAGAGAATTTTCCATTTGTTCTTATCGGAAACAAGGTTGACGTGGATGATGGAAACAGCAGAGTGGTTTCAGAGAAAAAGGCTAAAGCTTGGTGTGCTTCAAAGGGGAACATTCCTTACTTTGAGACCTCTGCCAAGGTAGGTACTAATGTGGAGGAAGCTTTCCAATGCATTGCCAAGGACGCATTGAAGAGCGGAGAAGAAGAAGAACTATACTTGCCAGACACAATCGATGTAGGGACGAGCAATCAACAGAGGTCTACAGGGTGTGAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009705 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04137 ko04138 ko04140 ko04144 ko04145 ko05132 ko05146 ko05152 map04137 map04138 map04140 map04144 map04145 map05132 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

206

Amino Acids

23.1

Weight (kDa)

4.98

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 174	7.1e-13	ADP-ribosylation factor family
Ras	PF00071	10 - 176	1.5e-57	Ras family
Roc	PF08477	10 - 128	1.8e-33	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	10 - 104	1.9e-07	50S ribosome-binding GTPase
Gtr1_RagA	PF04670	10 - 137	3.6e-07	Gtr1/RagA G protein conserved region
GTP_EFTU	PF00009	46 - 173	8.2e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49300 AT1G49300 AT3G18820
fragaria_vesca	FvH4_2g08630 FvH4_6g31570
malus_domestica	MD05G1067800.v1.1 MD10G1077700.v1.1 MD15G1318800.v1.1 MD17G1193300.v1.1
prunus_persica	Prupe.3G068700_v2.0.a1 Prupe.3G068700_v2.0.a1 Prupe.8G098400_v2.0.a1
pyrus_communis	pycom05g05870 pycom09g12780 pycom10g06060 pycom17g19930
rosa_chinensis	RchiOBHm_Chr2g0138641 RchiOBHm_Chr6g0263971
rosa_laevigata	RLG00000014297 RLG00000019749
rosa_multiflora	Rmu_ssc0000210.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431370 Rroxscaffold_2G00106040 Rroxscaffold_7G00203650
rosa_rugosa	Rorug02G0351900 Rorug02G0351900 Rorug06G0007200
rosa_samantha	Rh2AG401100 Rh2BG406300 Rh2CG387200 Rh2DG421400
rosa_wichuraiana	Rw2G032610 Rw6G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	537
AccI	GTMKAC	2 cut(s)	13, 602
AciI	CCGC	2 cut(s)	51, 537
AclWI	GGATC	2 cut(s)	316, 335
AcsI	RAATTY	2 cut(s)	314, 349
AfaI	GTAC	4 cut(s)	19, 110, 150, 487
AfiI	CCNNNNNNNGG	2 cut(s)	28, 112
AgsI	TTSAA	4 cut(s)	158, 290, 444, 532
AjiI	CACGTC	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	3 cut(s)	194, 431, 503
AluI	AGCT	3 cut(s)	194, 431, 503
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	2 cut(s)	316, 335
ApoI	RAATTY	2 cut(s)	314, 349
Asp700I	GAANNNNTTC	2 cut(s)	207, 315
AsuHPI	GGTGA	1 cut(s)	56
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
BccI	CCATC	2 cut(s)	343, 386
BciT130I	CCWGG	1 cut(s)	326
BciVI	GTATCC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	461
BfmI	CTRYAG	1 cut(s)	603
BfuI	GTATCC	1 cut(s)	181
BglII	AGATCT	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	326
BmgBI	CACGTC	1 cut(s)	385
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	326
BpmI	CTGGAG	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	11
Bsa29I	ATCGAT	1 cut(s)	573
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	6 cut(s)	40, 141, 217, 235, 477, 519
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 112
Bse1I	ACTGG	2 cut(s)	106, 308
Bse3DI	GCAATG	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	326
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	6 cut(s)	40, 141, 217, 235, 477, 519
BseGI	GGATG	2 cut(s)	36, 394
BseLI	CCNNNNNNNGG	2 cut(s)	28, 112
BseMI	GCAATG	1 cut(s)	513
BseNI	ACTGG	2 cut(s)	106, 308
BseRI	GAGGAG	1 cut(s)	14
BshVI	ATCGAT	1 cut(s)	573
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	2 cut(s)	28, 112
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	595
BsmI	GAATGC	1 cut(s)	620
Bso31I	GGTCTC	1 cut(s)	461
Bsp143I	GATC	4 cut(s)	160, 180, 321, 340
BspACI	CCGC	2 cut(s)	51, 537
BspDI	ATCGAT	1 cut(s)	573
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	2 cut(s)	316, 335
BspQI	GCTCTTC	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	461
BsrBI	CCGCTC	1 cut(s)	537
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	2 cut(s)	106, 308
BssECI	CCNNGG	6 cut(s)	40, 141, 217, 235, 477, 519
BssMI	GATC	4 cut(s)	160, 180, 321, 340
BssT1I	CCWWGG	4 cut(s)	141, 217, 477, 519
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	2 cut(s)	153, 236
Bst6I	CTCTTC	1 cut(s)	527
BstDSI	CCRYGG	1 cut(s)	235
BstENI	CCTNNNNNAGG	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	36, 394
BstKTI	GATC	4 cut(s)	163, 183, 324, 343
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	4 cut(s)	160, 180, 321, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 524
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	324
BstSFI	CTRYAG	1 cut(s)	603
BstX2I	RGATCY	2 cut(s)	180, 340
BstYI	RGATCY	2 cut(s)	180, 340
Bsu15I	ATCGAT	1 cut(s)	573
BsuI	GTATCC	1 cut(s)	181
BsuTUI	ATCGAT	1 cut(s)	573
BtgI	CCRYGG	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	385
BtsCI	GGATG	2 cut(s)	36, 394
ClaI	ATCGAT	1 cut(s)	573
CseI	GACGC	1 cut(s)	533
Csp6I	GTAC	4 cut(s)	18, 109, 149, 486
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	7 cut(s)	128, 194, 216, 227, 425, 431, 503
CviKI_1	RGCY	7 cut(s)	128, 194, 216, 227, 425, 431, 503
CviQI	GTAC	4 cut(s)	18, 109, 149, 486
DpnI	GATC	4 cut(s)	162, 182, 323, 342
DpnII	GATC	4 cut(s)	160, 180, 321, 340
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
Eco130I	CCWWGG	4 cut(s)	141, 217, 477, 519
Eco31I	GGTCTC	1 cut(s)	461
EcoNI	CCTNNNNNAGG	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	4 cut(s)	141, 217, 477, 519
EcoT22I	ATGCAT	1 cut(s)	515
ErhI	CCWWGG	4 cut(s)	141, 217, 477, 519
FaeI	CATG	1 cut(s)	280
FaiI	YATR	5 cut(s)	84, 262, 264, 278, 556
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	1 cut(s)	276
FauI	CCCGC	1 cut(s)	44
FblI	GTMKAC	2 cut(s)	13, 602
FokI	GGATG	2 cut(s)	23, 401
GsuI	CTGGAG	1 cut(s)	325
HgaI	GACGC	1 cut(s)	533
Hin1II	CATG	1 cut(s)	280
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	2 cut(s)	429, 501
HinfI	GANTC	2 cut(s)	76, 331
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	3 cut(s)	14, 382, 603
Hpy188I	TCNGA	6 cut(s)	213, 297, 321, 340, 371, 415
Hpy188III	TCNNGA	2 cut(s)	136, 344
Hpy8I	GTNNAC	3 cut(s)	14, 382, 603
HpyCH4III	ACNGT	2 cut(s)	153, 236
HpyCH4IV	ACGT	2 cut(s)	16, 384
HpyCH4V	TGCA	1 cut(s)	513
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 524
HpySE526I	ACGT	2 cut(s)	16, 384
Hsp92II	CATG	1 cut(s)	280
Kzo9I	GATC	4 cut(s)	160, 180, 321, 340
LguI	GCTCTTC	1 cut(s)	527
LmnI	GCTCC	1 cut(s)	125
MaeII	ACGT	2 cut(s)	16, 384
MalI	GATC	4 cut(s)	162, 182, 323, 342
MbiI	CCGCTC	1 cut(s)	537
MboI	GATC	4 cut(s)	160, 180, 321, 340
MboII	GAAGA	6 cut(s)	170, 323, 544, 554, 557, 560
MflI	RGATCY	2 cut(s)	180, 340
MluCI	AATT	3 cut(s)	271, 314, 349
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	8 cut(s)	32, 35, 50, 76, 300, 481, 490, 591
Mph1103I	ATGCAT	1 cut(s)	515
MroXI	GAANNNNTTC	2 cut(s)	207, 315
MseI	TTAA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	2 cut(s)	437, 524
NdeII	GATC	4 cut(s)	160, 180, 321, 340
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	1 cut(s)	127
NsiI	ATGCAT	1 cut(s)	515
PciSI	GCTCTTC	1 cut(s)	527
PctI	GAATGC	1 cut(s)	620
PdmI	GAANNNNTTC	2 cut(s)	207, 315
PfeI	GAWTC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	127
PsrI	GAACNNNNNNTAC	2 cut(s)	443, 475
PsuI	RGATCY	2 cut(s)	180, 340
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	4 cut(s)	19, 110, 150, 487
RsaNI	GTAC	4 cut(s)	18, 109, 149, 486
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	87
Sau3AI	GATC	4 cut(s)	160, 180, 321, 340
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	326
SfcI	CTRYAG	1 cut(s)	603
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	3 cut(s)	271, 314, 349
SsiI	CCGC	2 cut(s)	51, 537
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	4 cut(s)	141, 217, 477, 519
TaaI	ACNGT	2 cut(s)	153, 236
TaiI	ACGT	2 cut(s)	19, 387
TaqI	TCGA	2 cut(s)	163, 573
TasI	AATT	3 cut(s)	271, 314, 349
TatI	WGTACW	2 cut(s)	108, 148
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TspDTI	ATGAA	2 cut(s)	89, 293
XagI	CCTNNNNNAGG	1 cut(s)	26
XapI	RAATTY	2 cut(s)	314, 349
XmiI	GTMKAC	2 cut(s)	13, 602
XmnI	GAANNNNTTC	2 cut(s)	207, 315
Zsp2I	ATGCAT	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.