Prupe.8G098400_v2.0.a1

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0003997
Physical Location & Seq
Forward (+)
13010574 .. 13014160
3587 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G098400.1

Sequence Viewer

Length: 621 bp
ATGCCGTCTCGAAGAAGAACGCTCCTGAAGGTCATCATCCTCGGCGACAGCGGGGTGGGGAAGACTTCTTTGATGAATCAATATGTAAATAAGAAGTTCAGCAATCAATACAAAGCGACGATTGGAGCTGATTTTTTGACGAAGGAAGTTCAGTTTGAAGACAGGCTCTTCACCTTGCAGATCTGGGATACAGCTGGCCAGGAACGATTCCAAAGCCTTGGTGTAGCTTTTTACCGTGGTGCTGATTGCTGTGTTCTTGTTTATGATGTTAATTCAATGAAATCATTTGATAACCTTAACAACTGGAGGGAAGAATTTCTTATTCAGGCAAGTCCTTCAGATCCAGAAAATTTTCCATTTGTTGTCATAGGAAACAAGGTTGATGTAGATGGTGGAAATAGTAGAGTGGTTTCAGAGAAAAAGGCTCGAGCTTGGTGTGCATCAAAAGGAAATATTCCATACTACGAAACCTCTGCCAAGGAAGGCATTAATGTGGAAGAAGCTTTCCAGTGCATAGCAAAGGATGCTCTGAAGAGTGGGGAAGAAGAGGAGATATACTTGCCGGATACCATTGACGTTGGAAGCAGCAATCAGCCAAGATCAACTGGATGCGAGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04138 ko04140 ko04144 ko04145 ko05132 ko05146 ko05152 map04137 map04138 map04140 map04144 map04145 map05132 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

207

Amino Acids

23.06

Weight (kDa)

4.98

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AclWI GGATC 1 cut(s) 335
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 2 cut(s) 314, 349
AcuI CTGAAG 3 cut(s) 47, 321, 551
AgsI TTSAA 2 cut(s) 158, 276
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 5 cut(s) 128, 194, 227, 431, 503
AluI AGCT 5 cut(s) 128, 194, 227, 431, 503
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 426
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 585
ApoI RAATTY 2 cut(s) 314, 349
AseI ATTAAT 1 cut(s) 489
Asp700I GAANNNNTTC 2 cut(s) 315, 351
AsuHPI GGTGA 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 426
BalI TGGCCA 1 cut(s) 198
BbsI GAAGAC 2 cut(s) 68, 165
BbvI GCAGC 1 cut(s) 597
BccI CCATC 1 cut(s) 383
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BciT130I CCWGG 1 cut(s) 200
BciVI GTATCC 2 cut(s) 181, 559
BcoDI GTCTC 1 cut(s) 12
BfuI GTATCC 2 cut(s) 181, 559
BglII AGATCT 1 cut(s) 180
BisI GCNGC 1 cut(s) 586
BlsI GCNGC 1 cut(s) 587
Bme1390I CCNGG 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 426
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 3 cut(s) 449, 514, 599
BpiI GAAGAC 2 cut(s) 68, 165
BpmI CTGGAG 1 cut(s) 325
BsaJI CCNNGG 4 cut(s) 40, 217, 235, 477
Bse1I ACTGG 3 cut(s) 308, 508, 610
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 4 cut(s) 40, 217, 235, 477
BseGI GGATG 3 cut(s) 36, 529, 614
BseNI ACTGG 3 cut(s) 308, 508, 610
BseRI GAGGAG 1 cut(s) 563
BseXI GCAGC 1 cut(s) 597
BshFI GGCC 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 426
BsiSI CCGG 1 cut(s) 563
BsmAI GTCTC 1 cut(s) 12
BsmBI CGTCTC 1 cut(s) 12
BsnI GGCC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 426
Bsp143I GATC 3 cut(s) 180, 340, 599
BspACI CCGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 198
BspPI GGATC 1 cut(s) 335
BspQI GCTCTTC 1 cut(s) 173
BsrI ACTGG 3 cut(s) 308, 508, 610
BssECI CCNNGG 4 cut(s) 40, 217, 235, 477
BssMI GATC 3 cut(s) 180, 340, 599
BssT1I CCWWGG 2 cut(s) 217, 477
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 3 cut(s) 173, 527, 540
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 1 cut(s) 196
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 3 cut(s) 36, 529, 614
BstKTI GATC 3 cut(s) 183, 343, 602
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 3 cut(s) 180, 340, 599
BstMWI GCNNNNNNNGC 2 cut(s) 437, 524
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 597
BstV2I GAAGAC 2 cut(s) 68, 165
BstX2I RGATCY 2 cut(s) 180, 340
BstXI CCANNNNNNTGG 1 cut(s) 218
BstYI RGATCY 2 cut(s) 180, 340
BsuI GTATCC 2 cut(s) 181, 559
BsuRI GGCC 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 235
BtsCI GGATG 3 cut(s) 36, 529, 614
BtsIMutI CAGTG 1 cut(s) 515
Cac8I GCNNGC 1 cut(s) 196
DpnI GATC 3 cut(s) 182, 342, 601
DpnII GATC 3 cut(s) 180, 340, 599
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 3 cut(s) 173, 527, 540
EarI CTCTTC 3 cut(s) 173, 527, 540
Eco130I CCWWGG 2 cut(s) 217, 477
Eco57I CTGAAG 3 cut(s) 47, 321, 551
Eco88I CYCGRG 1 cut(s) 426
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 2 cut(s) 217, 477
ErhI CCWWGG 2 cut(s) 217, 477
Esp3I CGTCTC 1 cut(s) 12
FaiI YATR 6 cut(s) 84, 264, 368, 460, 515, 556
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FauI CCCGC 1 cut(s) 44
Fnu4HI GCNGC 1 cut(s) 586
FokI GGATG 2 cut(s) 23, 536
Fsp4HI GCNGC 1 cut(s) 586
GluI GCNGC 1 cut(s) 586
GsuI CTGGAG 1 cut(s) 325
HaeIII GGCC 1 cut(s) 198
HapII CCGG 1 cut(s) 563
HindIII AAGCTT 1 cut(s) 501
HinfI GANTC 2 cut(s) 76, 207
HpaII CCGG 1 cut(s) 563
HphI GGTGA 1 cut(s) 163
Hpy188I TCNGA 3 cut(s) 340, 415, 531
Hpy188III TCNNGA 3 cut(s) 9, 25, 344
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 4 cut(s) 22, 136, 345, 476
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 576
HpyCH4V TGCA 3 cut(s) 178, 440, 513
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 524
HpySE526I ACGT 1 cut(s) 576
Kzo9I GATC 3 cut(s) 180, 340, 599
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 2 cut(s) 27, 125
Lsp1109I GCAGC 1 cut(s) 597
LweI GCATC 3 cut(s) 449, 514, 599
MaeII ACGT 1 cut(s) 576
MalI GATC 3 cut(s) 182, 342, 601
MboI GATC 3 cut(s) 180, 340, 599
MflI RGATCY 2 cut(s) 180, 340
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 3 cut(s) 271, 314, 349
MluNI TGGCCA 1 cut(s) 198
MmeI TCCRAC 1 cut(s) 559
MnlI CCTC 4 cut(s) 50, 300, 481, 541
Mox20I TGGCCA 1 cut(s) 198
MroXI GAANNNNTTC 2 cut(s) 315, 351
MscI TGGCCA 1 cut(s) 198
MseI TTAA 4 cut(s) 270, 297, 489, 619
MslI CAYNNNNRTG 1 cut(s) 491
Msp20I TGGCCA 1 cut(s) 198
MspA1I CMGCKG 2 cut(s) 51, 194
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 437, 524
NdeII GATC 3 cut(s) 180, 340, 599
NmeAIII GCCGAG 1 cut(s) 21
PaeR7I CTCGAG 1 cut(s) 426
PciSI GCTCTTC 1 cut(s) 173
PdmI GAANNNNTTC 2 cut(s) 315, 351
PfeI GAWTC 2 cut(s) 76, 207
PkrI GCNGC 1 cut(s) 587
PshBI ATTAAT 1 cut(s) 489
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspXI VCTCGAGB 1 cut(s) 426
PsuI RGATCY 2 cut(s) 180, 340
PvuII CAGCTG 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 491
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 4 cut(s) 270, 297, 489, 619
SatI GCNGC 1 cut(s) 586
Sau3AI GATC 3 cut(s) 180, 340, 599
ScrFI CCNGG 1 cut(s) 200
SfaNI GCATC 3 cut(s) 449, 514, 599
Sfr274I CTCGAG 1 cut(s) 426
SlaI CTCGAG 1 cut(s) 426
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
Sse9I AATT 3 cut(s) 271, 314, 349
SsiI CCGC 1 cut(s) 51
SspI AATATT 1 cut(s) 454
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 2 cut(s) 217, 477
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 1 cut(s) 579
TaqI TCGA 2 cut(s) 10, 427
TasI AATT 3 cut(s) 271, 314, 349
TfiI GAWTC 2 cut(s) 76, 207
Tru1I TTAA 4 cut(s) 270, 297, 489, 619
Tru9I TTAA 4 cut(s) 270, 297, 489, 619
TscAI CASTG 1 cut(s) 515
TseI GCWGC 1 cut(s) 585
TspDTI ATGAA 2 cut(s) 89, 293
TspRI CASTG 1 cut(s) 515
VspI ATTAAT 1 cut(s) 489
XapI RAATTY 2 cut(s) 314, 349
XhoI CTCGAG 1 cut(s) 426
XmnI GAANNNNTTC 2 cut(s) 315, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.