RLG00000019785

Domain of unknown function (DUF3444)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017564
Physical Location & Seq
Forward (+)
56743999 .. 56744904
906 bp
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UTR
Exon/CDS
Intron
RLM00000019785

Sequence Viewer

Length: 507 bp
ATGGACTGCGAAAAAGAGGCAATCACGGCAATGGAGCTGTCAAAAGAAAAGATGCAGAATAATGATTTTGCAGGTGCAAGGAAGATGGCTCAAACGGCTCAATGCCTCTTCCCTCAGCTTCAGAACATTTCTCAGGTTCAGCAATCTGATAAAGGTGAAAGCATTAAGAAACAATACAGAAAACTAGCGCTATTACTTCATCCTGATAAGAATAAATATGCTGGTGCTGAGACTGTTTTTAAGCTGATTTCGGAAGCAAACAGCATGCTGGAGAACCAAACAAGTGTTCTAAGTATGACAAGAAGTATAGAAAAGCTCTTGCAAAAGCTGAGTTTTGCTGAGACACTTCTTAAGAAACGCCCTAGTTACGTCACCCTTCGGGTTGGGAAGACAGATTGGCCTGTCAAGGTCAATTATCTTCGGACTTATGCCGGATTCACAGATGGTTGGCAAGATTTCGGAGCGGAAATAATGTCAAAGTGGGCAATGGTTTATTCATTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

169

Amino Acids

19.16

Weight (kDa)

9.26

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 45 - 93 1.5e-12 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 62
Acc36I ACCTGC 1 cut(s) 62
AccBSI CCGCTC 1 cut(s) 464
AciI CCGC 1 cut(s) 464
AcuI CTGAAG 1 cut(s) 104
AfeI AGCGCT 1 cut(s) 189
AflII CTTAAG 1 cut(s) 350
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 5 cut(s) 37, 118, 244, 316, 328
AluI AGCT 5 cut(s) 37, 118, 244, 316, 328
Alw26I GTCTC 2 cut(s) 224, 335
Aor51HI AGCGCT 1 cut(s) 189
AoxI GGCC 1 cut(s) 398
AspLEI GCGC 1 cut(s) 190
AsuHPI GGTGA 2 cut(s) 167, 364
BbsI GAAGAC 1 cut(s) 395
BbvCI CCTCAGC 1 cut(s) 114
BccI CCATC 2 cut(s) 79, 437
BceAI ACGGC 2 cut(s) 42, 111
BcoDI GTCTC 2 cut(s) 224, 335
BfaI CTAG 2 cut(s) 185, 363
BfoI RGCGCY 1 cut(s) 191
BfrI CTTAAG 1 cut(s) 350
BfuAI ACCTGC 1 cut(s) 62
BmsI GCATC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 395
BpmI CTGGAG 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 114
Bse3DI GCAATG 2 cut(s) 36, 492
BseGI GGATG 1 cut(s) 199
BseMI GCAATG 2 cut(s) 36, 492
BseMII CTCAG 5 cut(s) 128, 146, 219, 320, 330
BshFI GGCC 1 cut(s) 400
BsiSI CCGG 1 cut(s) 432
BsmAI GTCTC 2 cut(s) 224, 335
BsnI GGCC 1 cut(s) 400
BspACI CCGC 1 cut(s) 464
BspANI GGCC 1 cut(s) 400
BspCNI CTCAG 5 cut(s) 127, 145, 220, 321, 331
BspMI ACCTGC 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 350
BsrBI CCGCTC 1 cut(s) 464
BsrDI GCAATG 2 cut(s) 36, 492
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 113
BstAFI CTTAAG 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 266
BstDEI CTNAG 6 cut(s) 114, 132, 228, 290, 329, 339
BstF5I GGATG 1 cut(s) 199
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 1 cut(s) 190
BstMAI GTCTC 2 cut(s) 224, 335
BstMWI GCNNNNNNNGC 2 cut(s) 26, 95
BstNSI RCATGY 1 cut(s) 268
BstV2I GAAGAC 1 cut(s) 395
BsuRI GGCC 1 cut(s) 400
BtsCI GGATG 1 cut(s) 199
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 266
CfoI GCGC 1 cut(s) 190
CviAII CATG 1 cut(s) 265
CviJI RGCY 8 cut(s) 37, 89, 98, 118, 244, 316, 328, 400
CviKI_1 RGCY 8 cut(s) 37, 89, 98, 118, 244, 316, 328, 400
DdeI CTNAG 6 cut(s) 114, 132, 228, 290, 329, 339
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco47III AGCGCT 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 104
FaeI CATG 1 cut(s) 268
FaiI YATR 5 cut(s) 219, 266, 296, 308, 429
FatI CATG 1 cut(s) 264
FokI GGATG 1 cut(s) 186
FspBI CTAG 2 cut(s) 185, 363
GlaI GCGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 290
HaeII RGCGCY 1 cut(s) 191
HaeIII GGCC 1 cut(s) 400
HapII CCGG 1 cut(s) 432
HhaI GCGC 1 cut(s) 190
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 1 cut(s) 435
HpaII CCGG 1 cut(s) 432
HphI GGTGA 2 cut(s) 167, 364
Hpy188I TCNGA 5 cut(s) 123, 148, 253, 423, 461
Hpy188III TCNNGA 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 4 cut(s) 55, 71, 77, 322
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 95
HpyF3I CTNAG 6 cut(s) 114, 132, 228, 290, 329, 339
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 1 cut(s) 188
LmnI GCTCC 2 cut(s) 34, 461
LpnPI CCDG 7 cut(s) 57, 119, 207, 216, 254, 414, 445
LweI GCATC 1 cut(s) 42
MaeI CTAG 2 cut(s) 185, 363
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 2 cut(s) 365, 370
MbiI CCGCTC 1 cut(s) 464
MboII GAAGA 4 cut(s) 94, 100, 400, 410
MluCI AATT 1 cut(s) 412
MnlI CCTC 3 cut(s) 10, 116, 123
MseI TTAA 3 cut(s) 165, 240, 351
MslI CAYNNNNRTG 1 cut(s) 29
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 1 cut(s) 432
MwoI GCNNNNNNNGC 2 cut(s) 26, 95
NlaIII CATG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 370
NspI RCATGY 1 cut(s) 268
PaeI GCATGC 1 cut(s) 268
PaqCI CACCTGC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 435
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 3 cut(s) 165, 240, 351
SfaNI GCATC 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SphI GCATGC 1 cut(s) 268
Sse9I AATT 1 cut(s) 412
SsiI CCGC 1 cut(s) 464
SspMI CTAG 2 cut(s) 185, 363
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 372
TasI AATT 1 cut(s) 412
TfiI GAWTC 1 cut(s) 435
Tru1I TTAA 3 cut(s) 165, 240, 351
Tru9I TTAA 3 cut(s) 165, 240, 351
TseFI GTSAC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 188, 486
Vha464I CTTAAG 1 cut(s) 350
XceI RCATGY 1 cut(s) 268
XspI CTAG 2 cut(s) 185, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.