Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000329.1

Orthogroup ID

OG0017564

Physical Location & Seq

Genomic Coordinates Reverse (-)

70476 .. 71545

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000329.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ctggtatgccattctccaggtggatcgtcaattcgacgaccaggatctataaagagatcgtaccgacggctggcattgctcctccaaccagacaagaaaaaatacgccttcgcccagcacgccttcaagctcgtcgtcgatgcatgggccgttctctccgacccagccaagaagctgatcttcgacaccgagctgggcctctacagcccagtcgatctcaccatcgcggccgatccaagagatgtcggaaaagcaggaattctcaagcaatctttgtttggtctcattgatagagaaaaagaaaaccctgaacttggggcttcatgcatagcggcggtttcggctgatcgtgtccagcgcagatactttgtttttggcacgttgtgggaccatgctttactggaagagttggtcgctagaagcctaaaagtctcaaaggcggcaatgataaagtggcagagtgtgcaggttgcttgtgctcctggtaacctgactagcctttctctttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030234 GO:0030433 GO:0031984 GO:0032781 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

170

Amino Acids

18.63

Weight (kDa)

9.57

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19580
pyrus_communis	pycom12g21330
rosa_laevigata	RLG00000019785
rosa_multiflora	Rmu_sc0000329.1_g000015 Rmu_sc0002451.1_g000012 Rmu_sc0002451.1_g000013 Rmu_sc0027429.1_g000001
rosa_samantha	Rh2CG421300 Rh4CG122800 Rh4DG108400 Rh5BG315200 Rh6AG163300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	457
AccII	CGCG	1 cut(s)	227
AciI	CCGC	4 cut(s)	227, 332, 335, 440
AclWI	GGATC	3 cut(s)	31, 52, 227
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	258
AdeI	CACNNNGTG	1 cut(s)	384
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	70, 314
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	3 cut(s)	16, 40, 481
AluBI	AGCT	3 cut(s)	130, 175, 193
AluI	AGCT	3 cut(s)	130, 175, 193
Alw21I	GWGCWC	1 cut(s)	481
Alw26I	GTCTC	2 cut(s)	287, 436
AlwI	GGATC	3 cut(s)	31, 52, 227
AoxI	GGCC	3 cut(s)	147, 196, 228
ApoI	RAATTY	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	3 cut(s)	147, 196, 388
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	481
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	2 cut(s)	83, 134
BciT130I	CCWGG	3 cut(s)	18, 42, 483
BcoDI	GTCTC	2 cut(s)	287, 436
BfaI	CTAG	2 cut(s)	417, 495
BfmI	CTRYAG	1 cut(s)	202
BfuAI	ACCTGC	1 cut(s)	457
BisI	GCNGC	3 cut(s)	228, 333, 441
BlsI	GCNGC	3 cut(s)	229, 334, 442
Bme1390I	CCNGG	3 cut(s)	18, 42, 483
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	3 cut(s)	147, 196, 388
BmiI	GGNNCC	1 cut(s)	389
BmrFI	CCNGG	3 cut(s)	18, 42, 483
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 314
Bse1I	ACTGG	2 cut(s)	209, 405
Bse3DI	GCAATG	2 cut(s)	74, 450
BseBI	CCWGG	3 cut(s)	18, 42, 483
BseLI	CCNNNNNNNGG	2 cut(s)	70, 314
BseMI	GCAATG	2 cut(s)	74, 450
BseNI	ACTGG	2 cut(s)	209, 405
BseRI	GAGGAG	1 cut(s)	71
BseX3I	CGGCCG	1 cut(s)	228
BseYI	CCCAGC	3 cut(s)	114, 163, 193
BsgI	GTGCAG	1 cut(s)	485
Bsh1236I	CGCG	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	3 cut(s)	149, 198, 230
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	481
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	2 cut(s)	70, 314
BsmAI	GTCTC	2 cut(s)	287, 436
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	3 cut(s)	149, 198, 230
Bso31I	GGTCTC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp143I	GATC	7 cut(s)	23, 44, 56, 177, 214, 232, 346
BspACI	CCGC	4 cut(s)	227, 332, 335, 440
BspANI	GGCC	3 cut(s)	149, 198, 230
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	389
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	3 cut(s)	31, 52, 227
BspTNI	GGTCTC	1 cut(s)	287
BsrDI	GCAATG	2 cut(s)	74, 450
BsrI	ACTGG	2 cut(s)	209, 405
BssMI	GATC	7 cut(s)	23, 44, 56, 177, 214, 232, 346
Bst2UI	CCWGG	3 cut(s)	18, 42, 483
Bst6I	CTCTTC	1 cut(s)	399
BstAPI	GCANNNNNTGC	1 cut(s)	463
BstC8I	GCNNGC	2 cut(s)	72, 120
BstDEI	CTNAG	1 cut(s)	510
BstEII	GGTNACC	1 cut(s)	485
BstFNI	CGCG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	7 cut(s)	26, 47, 59, 180, 217, 235, 349
BstMAI	GTCTC	2 cut(s)	287, 436
BstMBI	GATC	7 cut(s)	23, 44, 56, 177, 214, 232, 346
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 119, 204, 341, 463
BstNI	CCWGG	3 cut(s)	18, 42, 483
BstPI	GGTNACC	1 cut(s)	485
BstSCI	CCNGG	3 cut(s)	16, 40, 481
BstSFI	CTRYAG	1 cut(s)	202
BstUI	CGCG	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BstZI	CGGCCG	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	149, 198, 230
BtgZI	GCGATG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	2 cut(s)	72, 120
CfoI	GCGC	1 cut(s)	360
Cfr13I	GGNCC	3 cut(s)	147, 196, 388
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	3 cut(s)	144, 324, 392
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	7 cut(s)	25, 46, 58, 179, 216, 234, 348
DpnII	GATC	7 cut(s)	23, 44, 56, 177, 214, 232, 346
DraIII	CACNNNGTG	1 cut(s)	384
EaeI	YGGCCR	1 cut(s)	228
EagI	CGGCCG	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
EclXI	CGGCCG	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	388
Eco52I	CGGCCG	1 cut(s)	228
Eco91I	GGTNACC	1 cut(s)	485
EcoO65I	GGTNACC	1 cut(s)	485
EcoRI	GAATTC	1 cut(s)	258
EcoRII	CCWGG	3 cut(s)	16, 40, 481
EcoT22I	ATGCAT	2 cut(s)	145, 329
FaeI	CATG	3 cut(s)	147, 327, 395
FaiI	YATR	6 cut(s)	7, 50, 145, 325, 329, 393
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	3 cut(s)	143, 323, 391
Fnu4HI	GCNGC	3 cut(s)	228, 333, 441
Fsp4HI	GCNGC	3 cut(s)	228, 333, 441
FspBI	CTAG	2 cut(s)	417, 495
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	3 cut(s)	228, 333, 441
GsaI	CCCAGC	3 cut(s)	118, 167, 197
HaeIII	GGCC	3 cut(s)	149, 198, 230
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	3 cut(s)	147, 327, 395
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HphI	GGTGA	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	160, 248
Hpy99I	CGWCG	4 cut(s)	39, 69, 137, 140
HpyAV	CCTTC	2 cut(s)	118, 133
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	3 cut(s)	143, 327, 466
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 119, 204, 341, 463
HpyF3I	CTNAG	1 cut(s)	510
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	3 cut(s)	147, 327, 395
HspAI	GCGC	1 cut(s)	358
Kzo9I	GATC	7 cut(s)	23, 44, 56, 177, 214, 232, 346
LmnI	GCTCC	2 cut(s)	84, 484
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	417, 495
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	7 cut(s)	25, 46, 58, 179, 216, 234, 348
MboI	GATC	7 cut(s)	23, 44, 56, 177, 214, 232, 346
MboII	GAAGA	2 cut(s)	172, 416
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	2 cut(s)	30, 258
MmeI	TCCRAC	3 cut(s)	109, 183, 226
MnlI	CCTC	2 cut(s)	92, 209
Mph1103I	ATGCAT	2 cut(s)	145, 329
MspR9I	CCNGG	3 cut(s)	18, 42, 483
MvaI	CCWGG	3 cut(s)	18, 42, 483
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	5 cut(s)	76, 119, 204, 341, 463
NdeII	GATC	7 cut(s)	23, 44, 56, 177, 214, 232, 346
NlaIII	CATG	3 cut(s)	147, 327, 395
NlaIV	GGNNCC	1 cut(s)	389
NsiI	ATGCAT	2 cut(s)	145, 329
PkrI	GCNGC	3 cut(s)	229, 334, 442
Psp6I	CCWGG	3 cut(s)	16, 40, 481
PspEI	GGTNACC	1 cut(s)	485
PspFI	CCCAGC	3 cut(s)	114, 163, 193
PspGI	CCWGG	3 cut(s)	16, 40, 481
PspN4I	GGNNCC	1 cut(s)	389
PspPI	GGNCC	3 cut(s)	147, 196, 388
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SatI	GCNGC	3 cut(s)	228, 333, 441
Sau3AI	GATC	7 cut(s)	23, 44, 56, 177, 214, 232, 346
Sau96I	GGNCC	3 cut(s)	147, 196, 388
ScrFI	CCNGG	3 cut(s)	18, 42, 483
SduI	GDGCHC	1 cut(s)	481
SetI	ASST	7 cut(s)	22, 132, 177, 195, 383, 471, 492
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	1 cut(s)	202
SinI	GGWCC	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	2 cut(s)	30, 258
SsiI	CCGC	4 cut(s)	227, 332, 335, 440
SspMI	CTAG	2 cut(s)	417, 495
StyD4I	CCNGG	3 cut(s)	16, 40, 481
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	4 cut(s)	34, 138, 183, 213
TasI	AATT	2 cut(s)	30, 258
TauI	GCSGC	3 cut(s)	230, 335, 443
TspDTI	ATGAA	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	388
XapI	RAATTY	1 cut(s)	258
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XspI	CTAG	2 cut(s)	417, 495
Zsp2I	ATGCAT	2 cut(s)	145, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.