Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0017564

Physical Location & Seq

Genomic Coordinates Forward (+)

41836703 .. 41837065

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG315200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTCCAAAACAGGTTTTAATTATCTGAGAAGTTCGGGCGACTTTGCCATTCTCGCGCAAGAAACAGAGCCTCTATTGGATGAGTCCGATCAAATCTTAACCGTCGTCGACGTCCTCCTAGCCGCCGATAAGTGCGTAAACAACCACCACGACTGGTACGCCATTCTCCAGGTGGATCGCCAATTTGATGACCACGATCTGATCAAGAGATCGTACCAACGGCTGGCGTTGCTCCTCCAACCAGACAAGAACAAATACGCCTTCGCCGAGCACCTTTCAAGCTCGTCGCCGATGCATGGGCTGTTCTCTCCAACCCGGCAAAGAAGCCGGTCTTCTACACCTAGCTGGGCCTCTACAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030234 GO:0030433 GO:0031984 GO:0032781 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

120

Amino Acids

13.63

Weight (kDa)

5.89

Isoelectric Point (pI)

71.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	51 - 85	2e-07	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19580
pyrus_communis	pycom12g21330
rosa_laevigata	RLG00000019785
rosa_multiflora	Rmu_sc0000329.1_g000015 Rmu_sc0002451.1_g000012 Rmu_sc0002451.1_g000013 Rmu_sc0027429.1_g000001
rosa_samantha	Rh2CG421300 Rh4CG122800 Rh4DG108400 Rh5BG315200 Rh6AG163300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccB7I	CCANNNNNTGG	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	1 cut(s)	56
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	2 cut(s)	158, 215
AfiI	CCNNNNNNNGG	2 cut(s)	223, 296
AgsI	TTSAA	1 cut(s)	279
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	2 cut(s)	282, 345
AluI	AGCT	2 cut(s)	282, 345
Alw21I	GWGCWC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	183
AoxI	GGCC	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	348
AsuC2I	CCSGG	1 cut(s)	316
BbsI	GAAGAC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	273
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	170
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	316
BfaI	CTAG	3 cut(s)	119, 342, 361
BfmI	CTRYAG	1 cut(s)	354
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	2 cut(s)	170, 316
BmgT120I	GGNCC	1 cut(s)	348
BmrFI	CCNGG	2 cut(s)	170, 316
BmsI	GCATC	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	324
BpmI	CTGGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 296
Bse118I	RCCGGY	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	170
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	2 cut(s)	223, 296
BseMII	CTCAG	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	224
BseYI	CCCAGC	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	316, 328
BslI	CCNNNNNNNGG	2 cut(s)	223, 296
BsnI	GGCC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	5 cut(s)	88, 175, 196, 201, 209
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	56
BspPI	GGATC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	327
BssMI	GATC	5 cut(s)	88, 175, 196, 201, 209
BssNI	GRCGYC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	5 cut(s)	91, 178, 199, 204, 212
BstMBI	GATC	5 cut(s)	88, 175, 196, 201, 209
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 229, 356
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	168, 314
BstSFI	CTRYAG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	225
CfoI	GCGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	348
Csp6I	GTAC	2 cut(s)	157, 214
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	9 cut(s)	70, 122, 223, 282, 301, 327, 345, 350, 359
CviKI_1	RGCY	9 cut(s)	70, 122, 223, 282, 301, 327, 345, 350, 359
CviQI	GTAC	2 cut(s)	157, 214
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	5 cut(s)	90, 177, 198, 203, 211
DpnII	GATC	5 cut(s)	88, 175, 196, 201, 209
EcoRII	CCWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	297
FaeI	CATG	1 cut(s)	299
FaiI	YATR	1 cut(s)	297
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FatI	CATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	3 cut(s)	119, 342, 361
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	123
GsaI	CCCAGC	1 cut(s)	349
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	2 cut(s)	316, 328
HhaI	GCGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	299
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	2 cut(s)	316, 328
Hpy166II	GTNNAC	2 cut(s)	109, 139
Hpy188I	TCNGA	3 cut(s)	27, 88, 201
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	2 cut(s)	109, 139
Hpy99I	CGWCG	4 cut(s)	107, 110, 113, 289
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 229, 356
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	299
HspAI	GCGC	1 cut(s)	56
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	5 cut(s)	88, 175, 196, 201, 209
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	8 cut(s)	139, 155, 182, 209, 255, 329, 331, 341
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	3 cut(s)	119, 342, 361
MaeII	ACGT	1 cut(s)	111
MalI	GATC	5 cut(s)	90, 177, 198, 203, 211
MboI	GATC	5 cut(s)	88, 175, 196, 201, 209
MboII	GAAGA	1 cut(s)	324
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	2 cut(s)	19, 182
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	262, 335
MnlI	CCTC	4 cut(s)	81, 125, 245, 361
Mph1103I	ATGCAT	1 cut(s)	297
MseI	TTAA	2 cut(s)	18, 98
MspI	CCGG	2 cut(s)	316, 328
MspR9I	CCNGG	2 cut(s)	170, 316
MvaI	CCWGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	3 cut(s)	53, 229, 356
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	5 cut(s)	88, 175, 196, 201, 209
NlaIII	CATG	1 cut(s)	299
NmeAIII	GCCGAG	1 cut(s)	292
NsiI	ATGCAT	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	348
RsaI	GTAC	2 cut(s)	158, 215
RsaNI	GTAC	2 cut(s)	157, 214
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	18, 98
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	5 cut(s)	88, 175, 196, 201, 209
Sau96I	GGNCC	1 cut(s)	348
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	170, 316
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	7 cut(s)	16, 114, 174, 276, 284, 343, 347
SfaNI	GCATC	1 cut(s)	282
SfcI	CTRYAG	1 cut(s)	354
SgrDI	CGTCGACG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	19, 182
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	3 cut(s)	119, 342, 361
StyD4I	CCNGG	2 cut(s)	168, 314
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	108
TasI	AATT	2 cut(s)	19, 182
TauI	GCSGC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	18, 98
Tru9I	TTAA	2 cut(s)	18, 98
Van91I	CCANNNNNTGG	1 cut(s)	223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	3 cut(s)	119, 342, 361
ZraI	GACGTC	1 cut(s)	112
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.