Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027429.1

Orthogroup ID

OG0017564

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1989

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027429.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 295 bp

atcagataagttaacagctagctctccatttgccctctcatcgctgctaaatctagctagcaacaaccttcggtggattaaattctatttgaaacccgcagaaagacaagaacaaccagacaagaacaaatacgccttcgccgagcacgccttcaagctcgtcgccgatgcatgggcccttctctccgacccggacaagaagccggtcttcgacaccaagctgggtctctacagcccagtcgatctcaccgccgccgccgatctaagagatgtcggaaaagcaggaagtgcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030234 GO:0030433 GO:0031984 GO:0032781 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

97

Amino Acids

10.64

Weight (kDa)

7.92

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19580
pyrus_communis	pycom12g21330
rosa_laevigata	RLG00000019785
rosa_multiflora	Rmu_sc0000329.1_g000015 Rmu_sc0002451.1_g000012 Rmu_sc0002451.1_g000013 Rmu_sc0027429.1_g000001
rosa_samantha	Rh2CG421300 Rh4CG122800 Rh4DG108400 Rh5BG315200 Rh6AG163300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	97, 250, 253, 256
AcsI	RAATTY	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	92, 155
AluBI	AGCT	5 cut(s)	18, 22, 57, 158, 221
AluI	AGCT	5 cut(s)	18, 22, 57, 158, 221
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	231
AoxI	GGCC	1 cut(s)	175
ApaI	GGGCCC	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	175, 176
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	239
AsuNHI	GCTAGC	2 cut(s)	18, 57
BaeGI	GKGCMC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	3 cut(s)	19, 54, 58
BfmI	CTRYAG	1 cut(s)	230
BisI	GCNGC	3 cut(s)	45, 253, 256
BlsI	GCNGC	3 cut(s)	46, 254, 257
Bme1390I	CCNGG	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	175, 176
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	192
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	158
BmtI	GCTAGC	2 cut(s)	22, 61
BmuI	ACTGGG	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	221
BshFI	GGCC	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	192, 204
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	177
Bso31I	GGTCTC	1 cut(s)	231
Bsp120I	GGGCCC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	148, 179
Bsp143I	GATC	2 cut(s)	242, 260
BspACI	CCGC	4 cut(s)	97, 250, 253, 256
BspANI	GGCC	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	177
BspOI	GCTAGC	2 cut(s)	22, 61
BspTNI	GGTCTC	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	237
BssAI	RCCGGY	1 cut(s)	203
BssMI	GATC	2 cut(s)	242, 260
BstAPI	GCANNNNNTGC	1 cut(s)	288
BstC8I	GCNNGC	3 cut(s)	20, 59, 148
BstDEI	CTNAG	1 cut(s)	264
BstKTI	GATC	2 cut(s)	245, 263
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	2 cut(s)	242, 260
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 288
BstSCI	CCNGG	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	177
BtgZI	GCGATG	1 cut(s)	25
Cac8I	GCNNGC	3 cut(s)	20, 59, 148
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	175, 176
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	8 cut(s)	18, 22, 57, 158, 177, 203, 221, 235
CviKI_1	RGCY	8 cut(s)	18, 22, 57, 158, 177, 203, 221, 235
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	244, 262
DpnII	GATC	2 cut(s)	242, 260
Eco24I	GRGCYC	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	176
EcoT22I	ATGCAT	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	179
FaeI	CATG	1 cut(s)	175
FaiI	YATR	1 cut(s)	173
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FatI	CATG	1 cut(s)	171
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	3 cut(s)	45, 253, 256
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	3 cut(s)	45, 253, 256
FspBI	CTAG	3 cut(s)	19, 54, 58
GluI	GCNGC	3 cut(s)	45, 253, 256
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	2 cut(s)	192, 204
Hin1II	CATG	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	2 cut(s)	192, 204
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	3 cut(s)	5, 188, 276
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	4 cut(s)	78, 146, 161, 189
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 288
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	175
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	242, 260
LpnPI	CCDG	6 cut(s)	130, 205, 207, 217, 250, 268
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	158
MaeI	CTAG	3 cut(s)	19, 54, 58
MalI	GATC	2 cut(s)	244, 262
MboI	GATC	2 cut(s)	242, 260
MboII	GAAGA	1 cut(s)	200
MhlI	GDGCHC	2 cut(s)	148, 179
MluCI	AATT	1 cut(s)	81
MmeI	TCCRAC	2 cut(s)	211, 254
MnlI	CCTC	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	173
MseI	TTAA	2 cut(s)	12, 79
MspI	CCGG	2 cut(s)	192, 204
MspR9I	CCNGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	147, 288
NciI	CCSGG	1 cut(s)	192
NdeII	GATC	2 cut(s)	242, 260
NheI	GCTAGC	2 cut(s)	18, 57
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	1 cut(s)	177
NmeAIII	GCCGAG	1 cut(s)	167
NsiI	ATGCAT	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PkrI	GCNGC	3 cut(s)	46, 254, 257
PspFI	CCCAGC	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	177
PspOMI	GGGCCC	1 cut(s)	175
PspPI	GGNCC	2 cut(s)	175, 176
SaqAI	TTAA	2 cut(s)	12, 79
SatI	GCNGC	3 cut(s)	45, 253, 256
Sau3AI	GATC	2 cut(s)	242, 260
Sau96I	GGNCC	2 cut(s)	175, 176
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	2 cut(s)	148, 179
SetI	ASST	6 cut(s)	20, 24, 59, 70, 160, 223
SfaNI	GCATC	1 cut(s)	158
SfcI	CTRYAG	1 cut(s)	230
Sse9I	AATT	1 cut(s)	81
SsiI	CCGC	4 cut(s)	97, 250, 253, 256
SspMI	CTAG	3 cut(s)	19, 54, 58
StyD4I	CCNGG	1 cut(s)	190
TaqI	TCGA	2 cut(s)	211, 241
TasI	AATT	1 cut(s)	81
TauI	GCSGC	2 cut(s)	255, 258
Tru1I	TTAA	2 cut(s)	12, 79
Tru9I	TTAA	2 cut(s)	12, 79
TseI	GCWGC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	81
XspI	CTAG	3 cut(s)	19, 54, 58
Zsp2I	ATGCAT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.