Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0017564

Physical Location & Seq

Genomic Coordinates Reverse (-)

16635619 .. 16636038

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG108400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTCCAAAACAGGTTTCAATTATCTGAGTAGTTTGAGCGATTTTGCCATTCTCGAGCAAGAAACAGAGCCTCTATTGGACGGGTCCGATCAGATCTTAGCCGTCGTCGACATCCTCCTAGCTGCCGATAAGCGCGTAAACAACCACCACAACTGGCACGCCATTCTCCAGGTGGATCGCCGATTCAACGACCAGGATCTGATCAAGAGATTGTACCGACGGCTGGCCTTGCTCCTCCAACCAGACAAGAACAAATACGCCTTCGCCCAGCACCCCTTCAAGCTCGTTGTCGATGCATGGGCCGTTCTCTCCAACCCAGCCAAGAAGCTGGTCTTCGACACCGAGCTGGGCCTTTGCAGCCCAGTCGATCTCACCATCGCGGCCGATCCAAGAGATGTCGGAAAAGCAGGAAGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030234 GO:0030433 GO:0031984 GO:0032781 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

139

Amino Acids

15.57

Weight (kDa)

6.04

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	51 - 113	8.7e-13	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19580
pyrus_communis	pycom12g21330
rosa_laevigata	RLG00000019785
rosa_multiflora	Rmu_sc0000329.1_g000015 Rmu_sc0002451.1_g000012 Rmu_sc0002451.1_g000013 Rmu_sc0027429.1_g000001
rosa_samantha	Rh2CG421300 Rh4CG122800 Rh4DG108400 Rh5BG315200 Rh6AG163300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	2 cut(s)	135, 380
AciI	CCGC	1 cut(s)	380
AclWI	GGATC	3 cut(s)	183, 204, 380
AcoI	YGGCCR	1 cut(s)	381
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	3 cut(s)	19, 187, 280
AjnI	CCWGG	2 cut(s)	168, 192
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	4 cut(s)	122, 283, 328, 346
AluI	AGCT	4 cut(s)	122, 283, 328, 346
AlwI	GGATC	3 cut(s)	183, 204, 380
AlwNI	CAGNNNCTG	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	4 cut(s)	225, 300, 349, 381
ApeKI	GCWGC	2 cut(s)	122, 357
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	3 cut(s)	84, 300, 349
AsuHPI	GGTGA	1 cut(s)	364
AvaI	CYCGRG	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	109, 369
BccI	CCATC	1 cut(s)	383
BceAI	ACGGC	3 cut(s)	86, 236, 287
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BciT130I	CCWGG	2 cut(s)	170, 194
BclI	TGATCA	1 cut(s)	201
BfaI	CTAG	1 cut(s)	119
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	3 cut(s)	123, 358, 381
BlsI	GCNGC	3 cut(s)	124, 359, 382
Bme1390I	CCNGG	2 cut(s)	170, 194
Bme18I	GGWCC	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	3 cut(s)	84, 300, 349
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	2 cut(s)	170, 194
BmrI	ACTGGG	1 cut(s)	356
BmsI	GCATC	1 cut(s)	283
BmuI	ACTGGG	1 cut(s)	356
BpiI	GAAGAC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	158, 362
BseBI	CCWGG	2 cut(s)	170, 194
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	17
BseNI	ACTGG	2 cut(s)	158, 362
BseRI	GAGGAG	1 cut(s)	224
BseX3I	CGGCCG	1 cut(s)	381
BseXI	GCAGC	2 cut(s)	109, 369
BseYI	CCCAGC	3 cut(s)	267, 316, 346
Bsh1236I	CGCG	2 cut(s)	135, 380
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	4 cut(s)	227, 302, 351, 383
BsiEI	CGRYCG	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	223
BsnI	GGCC	4 cut(s)	227, 302, 351, 383
BsoBI	CYCGRG	1 cut(s)	53
Bsp143I	GATC	7 cut(s)	88, 93, 175, 196, 201, 367, 385
BspACI	CCGC	1 cut(s)	380
BspANI	GGCC	4 cut(s)	227, 302, 351, 383
BspCNI	CTCAG	1 cut(s)	18
BspFNI	CGCG	2 cut(s)	135, 380
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	3 cut(s)	183, 204, 380
BsrI	ACTGG	2 cut(s)	158, 362
BssMI	GATC	7 cut(s)	88, 93, 175, 196, 201, 367, 385
Bst2UI	CCWGG	2 cut(s)	170, 194
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	159, 225
BstDEI	CTNAG	2 cut(s)	26, 97
BstF5I	GGATG	1 cut(s)	111
BstFNI	CGCG	2 cut(s)	135, 380
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	7 cut(s)	91, 96, 178, 199, 204, 370, 388
BstMBI	GATC	7 cut(s)	88, 93, 175, 196, 201, 367, 385
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	3 cut(s)	229, 357, 413
BstNI	CCWGG	2 cut(s)	170, 194
BstSCI	CCNGG	2 cut(s)	168, 192
BstUI	CGCG	2 cut(s)	135, 380
BstV1I	GCAGC	2 cut(s)	109, 369
BstV2I	GAAGAC	1 cut(s)	325
BstX2I	RGATCY	2 cut(s)	93, 196
BstXI	CCANNNNNNTGG	1 cut(s)	328
BstYI	RGATCY	2 cut(s)	93, 196
BstZI	CGGCCG	1 cut(s)	381
BsuRI	GGCC	4 cut(s)	227, 302, 351, 383
BtgZI	GCGATG	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	159, 225
CaiI	CAGNNNCTG	1 cut(s)	199
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	3 cut(s)	84, 300, 349
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	297, 417
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	26, 97
DpnI	GATC	7 cut(s)	90, 95, 177, 198, 203, 369, 387
DpnII	GATC	7 cut(s)	88, 93, 175, 196, 201, 367, 385
EaeI	YGGCCR	1 cut(s)	381
EagI	CGGCCG	1 cut(s)	381
EclXI	CGGCCG	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	84
Eco52I	CGGCCG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	168, 192
EcoT22I	ATGCAT	1 cut(s)	298
FaeI	CATG	2 cut(s)	300, 420
FaiI	YATR	2 cut(s)	298, 418
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	2 cut(s)	296, 416
FbaI	TGATCA	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	123, 358, 381
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	3 cut(s)	123, 358, 381
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	3 cut(s)	123, 358, 381
GsaI	CCCAGC	3 cut(s)	271, 320, 350
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	4 cut(s)	227, 302, 351, 383
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	300, 420
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	183
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	2 cut(s)	109, 139
Hpy188I	TCNGA	5 cut(s)	27, 88, 93, 201, 401
Hpy188III	TCNNGA	2 cut(s)	53, 205
Hpy8I	GTNNAC	2 cut(s)	109, 139
Hpy99I	CGWCG	3 cut(s)	107, 110, 222
HpyAV	CCTTC	2 cut(s)	271, 286
HpyCH4V	TGCA	3 cut(s)	296, 357, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	229, 357, 413
HpyF3I	CTNAG	2 cut(s)	26, 97
Hsp92II	CATG	2 cut(s)	300, 420
HspAI	GCGC	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	7 cut(s)	88, 93, 175, 196, 201, 367, 385
LmnI	GCTCC	1 cut(s)	237
Lsp1109I	GCAGC	2 cut(s)	109, 369
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	119
MalI	GATC	7 cut(s)	90, 95, 177, 198, 203, 369, 387
MboI	GATC	7 cut(s)	88, 93, 175, 196, 201, 367, 385
MboII	GAAGA	1 cut(s)	325
MflI	RGATCY	2 cut(s)	93, 196
MluCI	AATT	1 cut(s)	19
MmeI	TCCRAC	3 cut(s)	262, 336, 379
MnlI	CCTC	3 cut(s)	81, 125, 245
Mph1103I	ATGCAT	1 cut(s)	298
MspR9I	CCNGG	2 cut(s)	170, 194
MvaI	CCWGG	2 cut(s)	170, 194
MvnI	CGCG	2 cut(s)	135, 380
MwoI	GCNNNNNNNGC	3 cut(s)	229, 357, 413
NdeII	GATC	7 cut(s)	88, 93, 175, 196, 201, 367, 385
NlaIII	CATG	2 cut(s)	300, 420
NlaIV	GGNNCC	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	298
PaeR7I	CTCGAG	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	183
PkrI	GCNGC	3 cut(s)	124, 359, 382
Psp6I	CCWGG	2 cut(s)	168, 192
PspFI	CCCAGC	3 cut(s)	267, 316, 346
PspGI	CCWGG	2 cut(s)	168, 192
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	3 cut(s)	84, 300, 349
PstNI	CAGNNNCTG	1 cut(s)	199
PsuI	RGATCY	2 cut(s)	93, 196
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SalI	GTCGAC	1 cut(s)	107
SatI	GCNGC	3 cut(s)	123, 358, 381
Sau3AI	GATC	7 cut(s)	88, 93, 175, 196, 201, 367, 385
Sau96I	GGNCC	3 cut(s)	84, 300, 349
ScrFI	CCNGG	2 cut(s)	170, 194
SetI	ASST	6 cut(s)	16, 124, 174, 285, 330, 348
SfaNI	GCATC	1 cut(s)	283
Sfr274I	CTCGAG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	84
SlaI	CTCGAG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	380
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	168, 192
TaqI	TCGA	5 cut(s)	54, 108, 291, 336, 366
TasI	AATT	1 cut(s)	19
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	1 cut(s)	183
TseI	GCWGC	2 cut(s)	122, 357
VpaK11BI	GGWCC	1 cut(s)	84
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.