Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0017564

Physical Location & Seq

Genomic Coordinates Reverse (-)

23577682 .. 23582028

Gene Structure 4347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG122800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGGCTGGAGGACCTCACGCAGAGGCTGTCGATCTTTGAGCGATTTTGCCATTCTCGCGCAAGAAACAGAACCTCTATTGGACGGGTCCGATCAGATCTTAGCCTTCGTCGACATCCTCCTAGCTGCCGATAAGCGCGTAAACAACCACCACAACTGGTACGCCATCCTCCAGGTGGATCGTCGATTCAACGACCAGGATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030234 GO:0030433 GO:0031984 GO:0032781 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

68

Amino Acids

7.89

Weight (kDa)

5.46

Isoelectric Point (pI)

64.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19580
pyrus_communis	pycom12g21330
rosa_laevigata	RLG00000019785
rosa_multiflora	Rmu_sc0000329.1_g000015 Rmu_sc0002451.1_g000012 Rmu_sc0002451.1_g000013 Rmu_sc0027429.1_g000001
rosa_samantha	Rh2CG421300 Rh4CG122800 Rh4DG108400 Rh5BG315200 Rh6AG163300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	111
AccII	CGCG	2 cut(s)	59, 138
AclWI	GGATC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	171, 195
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
AlwI	GGATC	1 cut(s)	186
AlwNI	CAGNNNCTG	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	125
AspLEI	GCGC	2 cut(s)	61, 138
AspS9I	GGNCC	2 cut(s)	12, 87
AvaII	GGWCC	2 cut(s)	12, 87
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	2 cut(s)	173, 197
BfaI	CTAG	1 cut(s)	122
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	2 cut(s)	173, 197
Bme18I	GGWCC	2 cut(s)	12, 87
BmgT120I	GGNCC	2 cut(s)	12, 87
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	173, 197
BpmI	CTGGAG	2 cut(s)	28, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	161
BseBI	CCWGG	2 cut(s)	173, 197
BseGI	GGATG	2 cut(s)	114, 165
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	112
Bsh1236I	CGCG	2 cut(s)	59, 138
BslI	CCNNNNNNNGG	1 cut(s)	175
Bsp143I	GATC	5 cut(s)	32, 91, 96, 178, 199
BspFNI	CGCG	2 cut(s)	59, 138
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	161
BssMI	GATC	5 cut(s)	32, 91, 96, 178, 199
Bst2UI	CCWGG	2 cut(s)	173, 197
BstDEI	CTNAG	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	114, 165
BstFNI	CGCG	2 cut(s)	59, 138
BstHHI	GCGC	2 cut(s)	61, 138
BstKTI	GATC	5 cut(s)	35, 94, 99, 181, 202
BstMBI	GATC	5 cut(s)	32, 91, 96, 178, 199
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	173, 197
BstSCI	CCNGG	2 cut(s)	171, 195
BstUI	CGCG	2 cut(s)	59, 138
BstV1I	GCAGC	1 cut(s)	112
BstX2I	RGATCY	2 cut(s)	96, 199
BstYI	RGATCY	2 cut(s)	96, 199
BtsCI	GGATG	2 cut(s)	114, 165
CaiI	CAGNNNCTG	1 cut(s)	27
CfoI	GCGC	2 cut(s)	61, 138
Cfr13I	GGNCC	2 cut(s)	12, 87
Csp6I	GTAC	1 cut(s)	160
CviJI	RGCY	4 cut(s)	6, 27, 104, 125
CviKI_1	RGCY	4 cut(s)	6, 27, 104, 125
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	5 cut(s)	34, 93, 98, 180, 201
DpnII	GATC	5 cut(s)	32, 91, 96, 178, 199
Eco47I	GGWCC	2 cut(s)	12, 87
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRII	CCWGG	2 cut(s)	171, 195
FaiI	YATR	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	2 cut(s)	101, 152
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	2 cut(s)	60, 137
GluI	GCNGC	1 cut(s)	126
GsuI	CTGGAG	2 cut(s)	28, 155
HhaI	GCGC	2 cut(s)	61, 138
Hin6I	GCGC	2 cut(s)	59, 136
HinP1I	GCGC	2 cut(s)	59, 136
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	186
Hpy166II	GTNNAC	2 cut(s)	112, 142
Hpy188I	TCNGA	2 cut(s)	91, 96
Hpy8I	GTNNAC	2 cut(s)	112, 142
Hpy99I	CGWCG	2 cut(s)	113, 186
HpyAV	CCTTC	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	100
HspAI	GCGC	2 cut(s)	59, 136
Kzo9I	GATC	5 cut(s)	32, 91, 96, 178, 199
LpnPI	CCDG	4 cut(s)	142, 158, 182, 185
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	122
MalI	GATC	5 cut(s)	34, 93, 98, 180, 201
MboI	GATC	5 cut(s)	32, 91, 96, 178, 199
MflI	RGATCY	2 cut(s)	96, 199
MnlI	CCTC	6 cut(s)	3, 17, 25, 84, 128, 179
MspR9I	CCNGG	2 cut(s)	173, 197
MvaI	CCWGG	2 cut(s)	173, 197
MvnI	CGCG	2 cut(s)	59, 138
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	5 cut(s)	32, 91, 96, 178, 199
NlaIV	GGNNCC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	127
PpuMI	RGGWCCY	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	171, 195
PspGI	CCWGG	2 cut(s)	171, 195
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	2 cut(s)	12, 87
PspPPI	RGGWCCY	1 cut(s)	12
PstNI	CAGNNNCTG	1 cut(s)	27
PsuI	RGATCY	2 cut(s)	96, 199
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SalI	GTCGAC	1 cut(s)	110
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	5 cut(s)	32, 91, 96, 178, 199
Sau96I	GGNCC	2 cut(s)	12, 87
ScrFI	CCNGG	2 cut(s)	173, 197
SetI	ASST	4 cut(s)	17, 76, 127, 177
SinI	GGWCC	2 cut(s)	12, 87
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	171, 195
TaqI	TCGA	3 cut(s)	31, 111, 184
TfiI	GAWTC	1 cut(s)	186
TseI	GCWGC	1 cut(s)	125
VpaK11BI	GGWCC	2 cut(s)	12, 87
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.