Rh6AG163300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017564
Physical Location & Seq
Forward (+)
25803774 .. 25804070
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG163300.1

Sequence Viewer

Length: 297 bp
ATGCATGGGCCGTTCTCTCCGACCCGGCCAAGAAGCCGGTCTTCGACACCGAGCTGGGCCTCTACAGCCCACTCGATCTCACCGCCGCCGCAGCAGCCTCCAATCCGAACAAGCTTCCGGTGCGGTAGGGGTAGAATGCTCGAAACTAGGCGTTTCGGAGGAGCAGCAGCAAAATCAACAGAGGTTGAGAATATCGAGCTTCTGGACGGCGTCCTTATTGTTATATACTGTATGAGTACCCTGAGGATGAGGGTCGACGCCGATCCAAGAGAAGTCGGAAAAGCAGGAAGTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.68

Weight (kDa)

10.69

Isoelectric Point (pI)

70.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 255
AciI CCGC 4 cut(s) 83, 86, 89, 123
AclWI GGATC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 26
AcyI GRCGYC 2 cut(s) 210, 258
AfaI GTAC 1 cut(s) 238
AluBI AGCT 3 cut(s) 54, 114, 199
AluI AGCT 3 cut(s) 54, 114, 199
AlwI GGATC 1 cut(s) 257
AoxI GGCC 3 cut(s) 8, 26, 57
ApeKI GCWGC 4 cut(s) 91, 94, 164, 167
AspS9I GGNCC 2 cut(s) 8, 57
AsuC2I CCSGG 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 72
AxyI CCTNAGG 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 4 cut(s) 103, 106, 176, 179
BceAI ACGGC 1 cut(s) 223
BcnI CCSGG 1 cut(s) 25
BfaI CTAG 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 6 cut(s) 86, 89, 92, 95, 165, 168
BlsI GCNGC 6 cut(s) 87, 90, 93, 96, 166, 169
Bme1390I CCNGG 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 8, 57
BmrFI CCNGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 33
BpuMI CCSGG 1 cut(s) 25
BsaHI GRCGYC 2 cut(s) 210, 258
BsaWI WCCGGW 1 cut(s) 117
Bse118I RCCGGY 1 cut(s) 36
Bse21I CCTNAGG 1 cut(s) 242
BseGI GGATG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 174
BseXI GCAGC 4 cut(s) 103, 106, 176, 179
BseYI CCCAGC 1 cut(s) 54
BshFI GGCC 3 cut(s) 10, 28, 59
BsiSI CCGG 3 cut(s) 25, 37, 118
BsmI GAATGC 1 cut(s) 141
BsnI GGCC 3 cut(s) 10, 28, 59
Bsp143I GATC 2 cut(s) 75, 262
BspACI CCGC 4 cut(s) 83, 86, 89, 123
BspANI GGCC 3 cut(s) 10, 28, 59
BspCNI CTCAG 1 cut(s) 234
BspPI GGATC 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 36
BssAI RCCGGY 1 cut(s) 36
BssMI GATC 2 cut(s) 75, 262
BssNI GRCGYC 2 cut(s) 210, 258
Bst4CI ACNGT 1 cut(s) 230
BstACI GRCGYC 2 cut(s) 210, 258
BstAPI GCANNNNNTGC 1 cut(s) 290
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 2 cut(s) 78, 265
BstMBI GATC 2 cut(s) 75, 262
BstMWI GCNNNNNNNGC 5 cut(s) 65, 91, 94, 120, 290
BstSCI CCNGG 1 cut(s) 23
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 4 cut(s) 103, 106, 176, 179
BstV2I GAAGAC 1 cut(s) 33
Bsu36I CCTNAGG 1 cut(s) 242
BsuRI GGCC 3 cut(s) 10, 28, 59
BtsCI GGATG 1 cut(s) 252
Cfr10I RCCGGY 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 8, 57
CseI GACGC 2 cut(s) 199, 266
Csp6I GTAC 1 cut(s) 237
CviAII CATG 1 cut(s) 5
CviJI RGCY 9 cut(s) 10, 28, 36, 54, 59, 68, 97, 114, 199
CviKI_1 RGCY 9 cut(s) 10, 28, 36, 54, 59, 68, 97, 114, 199
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 1 cut(s) 242
DpnI GATC 2 cut(s) 77, 264
DpnII GATC 2 cut(s) 75, 262
EaeI YGGCCR 1 cut(s) 26
Eco81I CCTNAGG 1 cut(s) 242
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 8
FaiI YATR 4 cut(s) 6, 224, 226, 233
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FatI CATG 1 cut(s) 4
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 6 cut(s) 86, 89, 92, 95, 165, 168
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 6 cut(s) 86, 89, 92, 95, 165, 168
FspBI CTAG 1 cut(s) 147
GluI GCNGC 6 cut(s) 86, 89, 92, 95, 165, 168
GsaI CCCAGC 1 cut(s) 58
HaeIII GGCC 3 cut(s) 10, 28, 59
HapII CCGG 3 cut(s) 25, 37, 118
HgaI GACGC 2 cut(s) 199, 266
Hin1I GRCGYC 2 cut(s) 210, 258
Hin1II CATG 1 cut(s) 8
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 112
HpaII CCGG 3 cut(s) 25, 37, 118
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 4 cut(s) 21, 107, 158, 278
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 91, 94, 120, 290
HpyF3I CTNAG 1 cut(s) 242
Hsp92I GRCGYC 2 cut(s) 210, 258
Hsp92II CATG 1 cut(s) 8
Kzo9I GATC 2 cut(s) 75, 262
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 7 cut(s) 38, 40, 50, 131, 188, 254, 270
Lsp1109I GCAGC 4 cut(s) 103, 106, 176, 179
MaeI CTAG 1 cut(s) 147
MalI GATC 2 cut(s) 77, 264
MboI GATC 2 cut(s) 75, 262
MboII GAAGA 1 cut(s) 33
MmeI TCCRAC 2 cut(s) 44, 256
MnlI CCTC 6 cut(s) 70, 108, 152, 175, 237, 243
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 3 cut(s) 25, 37, 118
MspR9I CCNGG 1 cut(s) 25
Mva1269I GAATGC 1 cut(s) 141
MwoI GCNNNNNNNGC 5 cut(s) 65, 91, 94, 120, 290
NciI CCSGG 1 cut(s) 25
NdeII GATC 2 cut(s) 75, 262
NlaIII CATG 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 141
PflFI GACNNNGTC 1 cut(s) 209
PkrI GCNGC 6 cut(s) 87, 90, 93, 96, 166, 169
PspFI CCCAGC 1 cut(s) 54
PspPI GGNCC 2 cut(s) 8, 57
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SalI GTCGAC 1 cut(s) 254
SatI GCNGC 6 cut(s) 86, 89, 92, 95, 165, 168
Sau3AI GATC 2 cut(s) 75, 262
Sau96I GGNCC 2 cut(s) 8, 57
ScrFI CCNGG 1 cut(s) 25
SetI ASST 4 cut(s) 56, 116, 186, 201
SfcI CTRYAG 1 cut(s) 63
SsiI CCGC 4 cut(s) 83, 86, 89, 123
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 230
TaqI TCGA 5 cut(s) 44, 74, 141, 195, 255
TauI GCSGC 2 cut(s) 88, 91
TseI GCWGC 4 cut(s) 91, 94, 164, 167
Tth111I GACNNNGTC 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 1 cut(s) 147
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.