Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002451.1

Orthogroup ID

OG0017564

Physical Location & Seq

Genomic Coordinates Reverse (-)

48238 .. 48504

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002451.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ctggtacgccattctccaggtggatcgtcgattcgacgaccaggatctataaagagatcgtaccgacggctggcattgctcctccaaccagacaagaacaaatacgccttcgcccagcacgccttcaagctcgtcgtcgatgcatgggccgttctctccgacccagccaagaagctggtcttcgacaccgagctgggcctttatagcccagtcgatctcaccatcgcggccgatccaagagatgtcggaaaagcaggaagtgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030234 GO:0030433 GO:0031984 GO:0032781 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

88

Amino Acids

9.59

Weight (kDa)

9.99

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19580
pyrus_communis	pycom12g21330
rosa_laevigata	RLG00000019785
rosa_multiflora	Rmu_sc0000329.1_g000015 Rmu_sc0002451.1_g000012 Rmu_sc0002451.1_g000013 Rmu_sc0027429.1_g000001
rosa_samantha	Rh2CG421300 Rh4CG122800 Rh4DG108400 Rh5BG315200 Rh6AG163300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	227
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	3 cut(s)	31, 52, 227
AcoI	YGGCCR	1 cut(s)	228
AfaI	GTAC	2 cut(s)	6, 62
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	16, 40
AluBI	AGCT	3 cut(s)	130, 175, 193
AluI	AGCT	3 cut(s)	130, 175, 193
AlwI	GGATC	3 cut(s)	31, 52, 227
AoxI	GGCC	3 cut(s)	147, 196, 228
AspS9I	GGNCC	2 cut(s)	147, 196
AsuHPI	GGTGA	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	172
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	2 cut(s)	83, 134
BciT130I	CCWGG	2 cut(s)	18, 42
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	2 cut(s)	18, 42
BmgT120I	GGNCC	2 cut(s)	147, 196
BmrFI	CCNGG	2 cut(s)	18, 42
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	74
BseBI	CCWGG	2 cut(s)	18, 42
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	71
BseX3I	CGGCCG	1 cut(s)	228
BseYI	CCCAGC	3 cut(s)	114, 163, 193
Bsh1236I	CGCG	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	3 cut(s)	149, 198, 230
BsiEI	CGRYCG	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	70
BsnI	GGCC	3 cut(s)	149, 198, 230
Bsp143I	GATC	5 cut(s)	23, 44, 56, 214, 232
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	3 cut(s)	149, 198, 230
BspFNI	CGCG	1 cut(s)	227
BspPI	GGATC	3 cut(s)	31, 52, 227
BsrDI	GCAATG	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	209
BssMI	GATC	5 cut(s)	23, 44, 56, 214, 232
Bst2UI	CCWGG	2 cut(s)	18, 42
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	72, 120
BstFNI	CGCG	1 cut(s)	227
BstKTI	GATC	5 cut(s)	26, 47, 59, 217, 235
BstMBI	GATC	5 cut(s)	23, 44, 56, 214, 232
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 119, 204, 260
BstNI	CCWGG	2 cut(s)	18, 42
BstSCI	CCNGG	2 cut(s)	16, 40
BstUI	CGCG	1 cut(s)	227
BstV2I	GAAGAC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	44
BstXI	CCANNNNNNTGG	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	44
BstZI	CGGCCG	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	149, 198, 230
BtgZI	GCGATG	1 cut(s)	208
Cac8I	GCNNGC	2 cut(s)	72, 120
Cfr13I	GGNCC	2 cut(s)	147, 196
Csp6I	GTAC	2 cut(s)	5, 61
CviAII	CATG	2 cut(s)	144, 264
CviJI	RGCY	9 cut(s)	70, 130, 149, 167, 175, 193, 198, 207, 230
CviKI_1	RGCY	9 cut(s)	70, 130, 149, 167, 175, 193, 198, 207, 230
CviQI	GTAC	2 cut(s)	5, 61
DpnI	GATC	5 cut(s)	25, 46, 58, 216, 234
DpnII	GATC	5 cut(s)	23, 44, 56, 214, 232
EaeI	YGGCCR	1 cut(s)	228
EagI	CGGCCG	1 cut(s)	228
EclXI	CGGCCG	1 cut(s)	228
Eco52I	CGGCCG	1 cut(s)	228
EcoRII	CCWGG	2 cut(s)	16, 40
EcoT22I	ATGCAT	1 cut(s)	145
FaeI	CATG	2 cut(s)	147, 267
FaiI	YATR	4 cut(s)	50, 145, 204, 265
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	2 cut(s)	143, 263
Fnu4HI	GCNGC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	228
GluI	GCNGC	1 cut(s)	228
GsaI	CCCAGC	3 cut(s)	118, 167, 197
HaeIII	GGCC	3 cut(s)	149, 198, 230
Hin1II	CATG	2 cut(s)	147, 267
HinfI	GANTC	1 cut(s)	31
HphI	GGTGA	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	160, 248
Hpy99I	CGWCG	5 cut(s)	31, 39, 69, 137, 140
HpyAV	CCTTC	2 cut(s)	118, 133
HpyCH4V	TGCA	2 cut(s)	143, 263
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 119, 204, 260
Hsp92II	CATG	2 cut(s)	147, 267
Kzo9I	GATC	5 cut(s)	23, 44, 56, 214, 232
LmnI	GCTCC	1 cut(s)	84
LweI	GCATC	1 cut(s)	130
MalI	GATC	5 cut(s)	25, 46, 58, 216, 234
MboI	GATC	5 cut(s)	23, 44, 56, 214, 232
MboII	GAAGA	1 cut(s)	172
MflI	RGATCY	1 cut(s)	44
MmeI	TCCRAC	3 cut(s)	109, 183, 226
MnlI	CCTC	1 cut(s)	92
Mph1103I	ATGCAT	1 cut(s)	145
MspR9I	CCNGG	2 cut(s)	18, 42
MvaI	CCWGG	2 cut(s)	18, 42
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	4 cut(s)	76, 119, 204, 260
NdeII	GATC	5 cut(s)	23, 44, 56, 214, 232
NlaIII	CATG	2 cut(s)	147, 267
NsiI	ATGCAT	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	16, 40
PspFI	CCCAGC	3 cut(s)	114, 163, 193
PspGI	CCWGG	2 cut(s)	16, 40
PspPI	GGNCC	2 cut(s)	147, 196
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	2 cut(s)	6, 62
RsaNI	GTAC	2 cut(s)	5, 61
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	5 cut(s)	23, 44, 56, 214, 232
Sau96I	GGNCC	2 cut(s)	147, 196
ScrFI	CCNGG	2 cut(s)	18, 42
SetI	ASST	4 cut(s)	22, 132, 177, 195
SfaNI	GCATC	1 cut(s)	130
SsiI	CCGC	1 cut(s)	227
StyD4I	CCNGG	2 cut(s)	16, 40
TaqI	TCGA	5 cut(s)	29, 34, 138, 183, 213
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.