Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018234

Physical Location & Seq

Genomic Coordinates Forward (+)

61542473 .. 61542997

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020140

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTAGACTCTTCCTCCACCGATCGTACTACTCTTCCTCCTTCCTCCTTCTCTGCACCGATGGCCAACTCAACACTTTTCTCCGATCACGAGATTCCGATGATACCCAACAACACCTTCCCTTCACTCTCAAGCATCTTCGACTTAGAACCCGAAAGGGGTTTTCTGGGTTTCATGGAGTTGCTCGGCAACATGGACTACACTCCTATGCATCAAACACAAGCACTTCCATCACCGTCGCCGGTGTCGTCTACAGTGCCGGAGAGTGGGACTAACTCTGAGGCCTTGAACTCCAGCGCCAATACTACTCCTACGACACCCAACTCCTCTTCGATCTCATTCTCGTCTAATGAAGCTCATGCGGCGAATAATAATGAGGAGCAAACCACAACAAAAGCAGGAGATGAGGAAGAAGATGCTGACCAAGATCCGGACAAGACCCATAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

151

Amino Acids

16.07

Weight (kDa)

4.11

Isoelectric Point (pI)

59.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018234)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000020140
rosa_multiflora	Rmu_sc0009528.1_g000016 Rmu_sc0034455.1_g000001
rosa_rugosa	Rorug02G0438900
rosa_samantha	Rh1BG083400 Rh2AG392200 Rh2CG378900 Rh4BG035800 Rh5CG329500 Rh7BG076400 Rh7DG079700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	6, 251
AccIII	TCCGGA	1 cut(s)	430
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	1 cut(s)	422
AcoI	YGGCCR	1 cut(s)	63
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	3 cut(s)	158, 266, 430
AgsI	TTSAA	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	1 cut(s)	356
AluI	AGCT	1 cut(s)	356
AlwI	GGATC	1 cut(s)	422
Aor13HI	TCCGGA	1 cut(s)	430
AoxI	GGCC	2 cut(s)	63, 282
AspLEI	GCGC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	225
BalI	TGGCCA	1 cut(s)	65
BauI	CACGAG	1 cut(s)	89
BccI	CCATC	2 cut(s)	55, 238
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	300
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
BmsI	GCATC	3 cut(s)	144, 220, 406
BpmI	CTGGAG	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	115
BsaWI	WCCGGW	1 cut(s)	430
BsaXI	ACNNNNNCTCC	3 cut(s)	22, 29, 52
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 266, 430
Bse118I	RCCGGY	1 cut(s)	241
BseAI	TCCGGA	1 cut(s)	430
BseLI	CCNNNNNNNGG	3 cut(s)	158, 266, 430
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	2 cut(s)	316, 392
BsgI	GTGCAG	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	65, 284
BsiEI	CGRYCG	1 cut(s)	25
BsiSI	CCGG	3 cut(s)	242, 260, 431
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	3 cut(s)	158, 266, 430
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	65, 284
Bsp13I	TCCGGA	1 cut(s)	430
Bsp143I	GATC	4 cut(s)	22, 85, 333, 427
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	2 cut(s)	65, 284
BspCNI	CTCAG	1 cut(s)	271
BspEI	TCCGGA	1 cut(s)	430
BspPI	GGATC	1 cut(s)	422
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssMI	GATC	4 cut(s)	22, 85, 333, 427
BssSI	CACGAG	1 cut(s)	89
Bst2BI	CACGAG	1 cut(s)	89
Bst4CI	ACNGT	3 cut(s)	237, 256, 450
Bst6I	CTCTTC	3 cut(s)	16, 39, 334
BstDEI	CTNAG	2 cut(s)	145, 279
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	4 cut(s)	25, 88, 336, 430
BstMBI	GATC	4 cut(s)	22, 85, 333, 427
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 362
BstSFI	CTRYAG	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	65, 284
BtsIMutI	CAGTG	1 cut(s)	261
CfoI	GCGC	1 cut(s)	299
Cfr10I	RCCGGY	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	3 cut(s)	175, 193, 359
CviJI	RGCY	3 cut(s)	65, 284, 356
CviKI_1	RGCY	3 cut(s)	65, 284, 356
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	2 cut(s)	145, 279
DpnI	GATC	4 cut(s)	24, 87, 335, 429
DpnII	GATC	4 cut(s)	22, 85, 333, 427
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	3 cut(s)	16, 39, 334
EarI	CTCTTC	3 cut(s)	16, 39, 334
Eco147I	AGGCCT	1 cut(s)	284
EcoT22I	ATGCAT	1 cut(s)	213
FaeI	CATG	3 cut(s)	178, 196, 362
FaiI	YATR	5 cut(s)	176, 194, 209, 360, 444
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	3 cut(s)	174, 192, 358
FblI	GTMKAC	2 cut(s)	6, 251
Fnu4HI	GCNGC	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	363
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	277
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	65, 284
HapII	CCGG	3 cut(s)	242, 260, 431
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	3 cut(s)	178, 196, 362
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HinfI	GANTC	2 cut(s)	8, 94
HpaII	CCGG	3 cut(s)	242, 260, 431
HphI	GGTGA	1 cut(s)	225
Hpy166II	GTNNAC	2 cut(s)	7, 252
Hpy188I	TCNGA	3 cut(s)	85, 99, 280
Hpy188III	TCNNGA	2 cut(s)	89, 431
Hpy8I	GTNNAC	2 cut(s)	7, 252
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	4 cut(s)	51, 58, 127, 132
HpyCH4III	ACNGT	3 cut(s)	237, 256, 450
HpyCH4V	TGCA	2 cut(s)	56, 211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 362
HpyF3I	CTNAG	2 cut(s)	145, 279
Hsp92II	CATG	3 cut(s)	178, 196, 362
HspAI	GCGC	1 cut(s)	297
Kpn2I	TCCGGA	1 cut(s)	430
Kzo9I	GATC	4 cut(s)	22, 85, 333, 427
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	6 cut(s)	152, 255, 273, 307, 384, 444
LweI	GCATC	3 cut(s)	144, 220, 406
MalI	GATC	4 cut(s)	24, 87, 335, 429
MboI	GATC	4 cut(s)	22, 85, 333, 427
MboII	GAAGA	6 cut(s)	3, 26, 130, 321, 422, 425
MflI	RGATCY	1 cut(s)	427
MlsI	TGGCCA	1 cut(s)	65
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	7 cut(s)	25, 48, 55, 274, 337, 370, 400
Mox20I	TGGCCA	1 cut(s)	65
Mph1103I	ATGCAT	1 cut(s)	213
MroI	TCCGGA	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	3 cut(s)	242, 260, 431
MwoI	GCNNNNNNNGC	2 cut(s)	62, 362
NdeII	GATC	4 cut(s)	22, 85, 333, 427
NlaIII	CATG	3 cut(s)	178, 196, 362
NmeAIII	GCCGAG	1 cut(s)	165
NsiI	ATGCAT	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	364
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PsuI	RGATCY	1 cut(s)	427
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	206
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	4 cut(s)	22, 85, 333, 427
SchI	GAGTC	1 cut(s)	2
SetI	ASST	2 cut(s)	119, 358
SfaNI	GCATC	3 cut(s)	144, 220, 406
SfcI	CTRYAG	1 cut(s)	252
SgrAI	CRCCGGYG	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
SseBI	AGGCCT	1 cut(s)	284
SsiI	CCGC	1 cut(s)	362
StuI	AGGCCT	1 cut(s)	284
TaaI	ACNGT	3 cut(s)	237, 256, 450
TaqI	TCGA	2 cut(s)	141, 332
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	94
TscAI	CASTG	1 cut(s)	261
TspDTI	ATGAA	2 cut(s)	163, 366
TspRI	CASTG	1 cut(s)	261
XmiI	GTMKAC	2 cut(s)	6, 251
Zsp2I	ATGCAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.