Rh4BG035800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0018234
Physical Location & Seq
Forward (+)
6435702 .. 6435971
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG035800.1

Sequence Viewer

Length: 270 bp
ATGATGATGCCACCTCGGCGGCAGCAGCATCAAACACAAGCACTTCCGTCAGCGTCGCTGGTGTCGTCTACAGTGCCGGAGAGTGGGACTAACTTTGAGGCCTTGAACTCCAGCGCCAATACTGCTCCTACGACACCCAACTCCTCTTCGATCTCATCCTCGTCTAATGAAGCTCATGCGGCAAATAATAATGAGGAGCAAACCACAACAAAACCAGGAGATGAGGAAGAAGATGCTGACCAAGATCCGGACAAGACCCAGAAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.49

Weight (kDa)

4.38

Isoelectric Point (pI)

62.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 68
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 2 cut(s) 19, 179
AclWI GGATC 1 cut(s) 239
AfiI CCNNNNNNNGG 2 cut(s) 83, 247
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
AlwI GGATC 1 cut(s) 239
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 2 cut(s) 22, 25
AspLEI GCGC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 34, 37
BciT130I CCWGG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 69
BfoI RGCGCY 1 cut(s) 117
BglI GCCNNNNNGGC 1 cut(s) 16
BisI GCNGC 4 cut(s) 20, 23, 26, 180
BlsI GCNGC 4 cut(s) 21, 24, 27, 181
Bme1390I CCNGG 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 2 cut(s) 37, 223
BpmI CTGGAG 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 247
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 155
BseLI CCNNNNNNNGG 2 cut(s) 83, 247
BseRI GAGGAG 2 cut(s) 133, 209
BseXI GCAGC 2 cut(s) 34, 37
BshFI GGCC 1 cut(s) 101
BsiSI CCGG 2 cut(s) 77, 248
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 2 cut(s) 83, 247
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 1 cut(s) 101
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 2 cut(s) 150, 244
BspACI CCGC 2 cut(s) 19, 179
BspANI GGCC 1 cut(s) 101
BspEI TCCGGA 1 cut(s) 247
BspPI GGATC 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 2 cut(s) 150, 244
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 73, 267
Bst6I CTCTTC 1 cut(s) 151
BstF5I GGATG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 2 cut(s) 153, 247
BstMBI GATC 2 cut(s) 150, 244
BstMWI GCNNNNNNNGC 4 cut(s) 16, 25, 122, 179
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 2 cut(s) 34, 37
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 78
CfoI GCGC 1 cut(s) 116
CseI GACGC 1 cut(s) 42
CviAII CATG 1 cut(s) 176
CviJI RGCY 2 cut(s) 101, 173
CviKI_1 RGCY 2 cut(s) 101, 173
DpnI GATC 2 cut(s) 152, 246
DpnII GATC 2 cut(s) 150, 244
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco147I AGGCCT 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 214
FaeI CATG 1 cut(s) 179
FaiI YATR 1 cut(s) 177
FaqI GGGAC 1 cut(s) 100
FatI CATG 1 cut(s) 175
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 4 cut(s) 20, 23, 26, 180
FokI GGATG 1 cut(s) 142
Fsp4HI GCNGC 4 cut(s) 20, 23, 26, 180
GlaI GCGC 1 cut(s) 115
GluI GCNGC 4 cut(s) 20, 23, 26, 180
GsuI CTGGAG 1 cut(s) 94
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 101
HapII CCGG 2 cut(s) 77, 248
HgaI GACGC 1 cut(s) 42
HhaI GCGC 1 cut(s) 116
Hin1II CATG 1 cut(s) 179
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HpaII CCGG 2 cut(s) 77, 248
Hpy166II GTNNAC 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 58
HpyCH4III ACNGT 2 cut(s) 73, 267
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 25, 122, 179
Hsp92II CATG 1 cut(s) 179
HspAI GCGC 1 cut(s) 114
Kpn2I TCCGGA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 150, 244
LmnI GCTCC 2 cut(s) 130, 196
LpnPI CCDG 6 cut(s) 44, 90, 124, 201, 228, 261
Lsp1109I GCAGC 2 cut(s) 34, 37
LweI GCATC 2 cut(s) 37, 223
MalI GATC 2 cut(s) 152, 246
MboI GATC 2 cut(s) 150, 244
MboII GAAGA 3 cut(s) 138, 239, 242
MflI RGATCY 1 cut(s) 244
MnlI CCTC 6 cut(s) 24, 91, 154, 169, 187, 217
MroI TCCGGA 1 cut(s) 247
MspI CCGG 2 cut(s) 77, 248
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 4 cut(s) 16, 25, 122, 179
NdeII GATC 2 cut(s) 150, 244
NlaIII CATG 1 cut(s) 179
PceI AGGCCT 1 cut(s) 101
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PkrI GCNGC 4 cut(s) 21, 24, 27, 181
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PsuI RGATCY 1 cut(s) 244
SatI GCNGC 4 cut(s) 20, 23, 26, 180
Sau3AI GATC 2 cut(s) 150, 244
ScrFI CCNGG 1 cut(s) 216
SetI ASST 2 cut(s) 16, 175
SfaNI GCATC 2 cut(s) 37, 223
SfcI CTRYAG 1 cut(s) 69
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 2 cut(s) 19, 179
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 2 cut(s) 73, 267
TaqI TCGA 1 cut(s) 149
TauI GCSGC 2 cut(s) 22, 182
TscAI CASTG 1 cut(s) 78
TseI GCWGC 2 cut(s) 22, 25
TspDTI ATGAA 1 cut(s) 183
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 1 cut(s) 78
XmiI GTMKAC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.