Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0018234

Physical Location & Seq

Genomic Coordinates Forward (+)

13067516 .. 13067866

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG083400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAGTTGCTCGGCAACACGAACTACGCTCCTGTGGTTGATTTCGGGACCCAAACGATGTCGTCTGACTCGTTGATGACGATGATGATGCCACCTCGGCGGCAGCAACATCAAACACAAGCGCTTCCATCACCGTCGCCGGTGTCGTCTACAGTGCCGGAGAGTGAGACTAACTTTGAGGCCTTGAACTCCAGCGCCAATACTGCTCCTACTACACCCAACTCCTCTTCGATCTCATCCTCGTCTAATGAAGCTCATGCGGCGAATAATAATGAGGAGCAAACCACAACAAAAGCAGGAGATGAGGAAGAAGATGGTGACCAAGATCCGGACAAGACCCAAAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

116

Amino Acids

12.44

Weight (kDa)

4.14

Isoelectric Point (pI)

71.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018234)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000020140
rosa_multiflora	Rmu_sc0009528.1_g000016 Rmu_sc0034455.1_g000001
rosa_rugosa	Rorug02G0438900
rosa_samantha	Rh1BG083400 Rh2AG392200 Rh2CG378900 Rh4BG035800 Rh5CG329500 Rh7BG076400 Rh7DG079700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	328
AciI	CCGC	2 cut(s)	100, 260
AclWI	GGATC	1 cut(s)	320
AfeI	AGCGCT	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	1 cut(s)	187
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	1 cut(s)	320
Aor13HI	TCCGGA	1 cut(s)	328
Aor51HI	AGCGCT	1 cut(s)	123
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	103
AspLEI	GCGC	2 cut(s)	124, 197
AspS9I	GGNCC	1 cut(s)	48
AsuHPI	GGTGA	2 cut(s)	123, 329
AvaII	GGWCC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	2 cut(s)	136, 308
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BcoDI	GTCTC	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	150
BfoI	RGCGCY	2 cut(s)	125, 198
BglI	GCCNNNNNGGC	1 cut(s)	97
BisI	GCNGC	3 cut(s)	101, 104, 261
BlsI	GCNGC	3 cut(s)	102, 105, 262
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	2 cut(s)	49, 50
BmsI	GCATC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	95
BsaWI	WCCGGW	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse118I	RCCGGY	1 cut(s)	139
BseAI	TCCGGA	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseRI	GAGGAG	2 cut(s)	214, 290
BseXI	GCAGC	1 cut(s)	115
BshFI	GGCC	1 cut(s)	182
BsiSI	CCGG	3 cut(s)	140, 158, 329
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	182
Bsp13I	TCCGGA	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	231, 325
BspACI	CCGC	2 cut(s)	100, 260
BspANI	GGCC	1 cut(s)	182
BspEI	TCCGGA	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	49, 50
BspPI	GGATC	1 cut(s)	320
BsrFI	RCCGGY	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	2 cut(s)	231, 325
Bst4CI	ACNGT	3 cut(s)	135, 154, 348
Bst6I	CTCTTC	1 cut(s)	232
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	236
BstH2I	RGCGCY	2 cut(s)	125, 198
BstHHI	GCGC	2 cut(s)	124, 197
BstKTI	GATC	2 cut(s)	234, 328
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	2 cut(s)	231, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 203, 260
BstPI	GGTNACC	1 cut(s)	317
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	159
CfoI	GCGC	2 cut(s)	124, 197
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	48
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	2 cut(s)	182, 254
CviKI_1	RGCY	2 cut(s)	182, 254
DpnI	GATC	2 cut(s)	233, 327
DpnII	GATC	2 cut(s)	231, 325
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
Eco147I	AGGCCT	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	48
Eco47III	AGCGCT	1 cut(s)	123
Eco91I	GGTNACC	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	48
EcoO65I	GGTNACC	1 cut(s)	317
FaeI	CATG	1 cut(s)	260
FaiI	YATR	1 cut(s)	258
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	3 cut(s)	101, 104, 261
FokI	GGATG	1 cut(s)	223
Fsp4HI	GCNGC	3 cut(s)	101, 104, 261
GlaI	GCGC	2 cut(s)	123, 196
GluI	GCNGC	3 cut(s)	101, 104, 261
GsuI	CTGGAG	1 cut(s)	175
HaeII	RGCGCY	2 cut(s)	125, 198
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	3 cut(s)	140, 158, 329
HhaI	GCGC	2 cut(s)	124, 197
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	2 cut(s)	122, 195
HinP1I	GCGC	2 cut(s)	122, 195
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	3 cut(s)	140, 158, 329
HphI	GGTGA	2 cut(s)	123, 329
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	46, 329
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	1 cut(s)	139
HpyCH4III	ACNGT	3 cut(s)	135, 154, 348
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 203, 260
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	2 cut(s)	122, 195
KflI	GGGWCCC	1 cut(s)	48
Kpn2I	TCCGGA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	231, 325
LmnI	GCTCC	3 cut(s)	34, 211, 277
LpnPI	CCDG	6 cut(s)	45, 153, 171, 205, 282, 342
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	2 cut(s)	233, 327
MboI	GATC	2 cut(s)	231, 325
MboII	GAAGA	3 cut(s)	219, 320, 323
MflI	RGATCY	1 cut(s)	325
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	6 cut(s)	105, 172, 235, 250, 268, 298
MroI	TCCGGA	1 cut(s)	328
MspI	CCGG	3 cut(s)	140, 158, 329
MwoI	GCNNNNNNNGC	3 cut(s)	97, 203, 260
NdeII	GATC	2 cut(s)	231, 325
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	2 cut(s)	49, 50
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	3 cut(s)	68, 77, 143
PkrI	GCNGC	3 cut(s)	102, 105, 262
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PpuMI	RGGWCCY	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	48
PspEI	GGTNACC	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	49, 50
PspPI	GGNCC	1 cut(s)	48
PspPPI	RGGWCCY	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	325
SatI	GCNGC	3 cut(s)	101, 104, 261
Sau3AI	GATC	2 cut(s)	231, 325
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	62
SetI	ASST	2 cut(s)	97, 256
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	150
SgrAI	CRCCGGYG	1 cut(s)	139
SinI	GGWCC	1 cut(s)	48
SseBI	AGGCCT	1 cut(s)	182
SsiI	CCGC	2 cut(s)	100, 260
StuI	AGGCCT	1 cut(s)	182
TaaI	ACNGT	3 cut(s)	135, 154, 348
TaqI	TCGA	1 cut(s)	230
TauI	GCSGC	2 cut(s)	103, 263
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.