Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0018234

Physical Location & Seq

Genomic Coordinates Reverse (-)

36915231 .. 36915695

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG329500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCCAACTCAGCACTTTTCTCAGATCACGAGATTCCAATGATACCCAACACCTTATCTTCACTCTCCGGCATCTTCGACTCAGAACCCGAGAGGGATTCTCTTGGTTTCATGGATTTGCTCTGCAACGCGGGGGACTACGCTCCTCTGTTTGATTTTGGGACCCAAACGACGCCATCTAACTCGTTGATGACGATGTTGATGCCACCTCAGCAGCAGCAGCAAACAAAAACACAAACACAAGTGCTTCTATCGCCGTCGCCGGTGTCGTCTATAGTGCTGGAGAGTGAGACTAACTCCGAGGCCTTGAACTCTACCGCCAATACTGCTCTTACGACACCCAACTCGTCTTCGATCTCTTCCTCGTCTAACGAAGCTCATGCGGCAAATAATAATGAGGAGCAAACCACGACAAAAACAGCAGATGAGGAAGAAGATGCTGACCAAGATCCGGACAAGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

154

Amino Acids

16.51

Weight (kDa)

4.05

Isoelectric Point (pI)

55.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018234)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000020140
rosa_multiflora	Rmu_sc0009528.1_g000016 Rmu_sc0034455.1_g000001
rosa_rugosa	Rorug02G0438900
rosa_samantha	Rh1BG083400 Rh2AG392200 Rh2CG378900 Rh4BG035800 Rh5CG329500 Rh7BG076400 Rh7DG079700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	131
AccIII	TCCGGA	1 cut(s)	451
AciI	CCGC	3 cut(s)	131, 318, 383
AclWI	GGATC	1 cut(s)	443
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	451
AgsI	TTSAA	1 cut(s)	310
AluBI	AGCT	1 cut(s)	377
AluI	AGCT	1 cut(s)	377
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	89
Aor13HI	TCCGGA	1 cut(s)	451
AoxI	GGCC	2 cut(s)	3, 303
ApeKI	GCWGC	3 cut(s)	214, 217, 220
AspS9I	GGNCC	1 cut(s)	162
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	162
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	342
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	226, 229, 232
BccI	CCATC	1 cut(s)	184
BceAI	ACGGC	1 cut(s)	241
BcgI	CGANNNNNNTGC	4 cut(s)	184, 218, 362, 396
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	463
BfmI	CTRYAG	1 cut(s)	273
BisI	GCNGC	4 cut(s)	215, 218, 221, 384
BlsI	GCNGC	4 cut(s)	216, 219, 222, 385
Bme18I	GGWCC	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	2 cut(s)	163, 164
BmsI	GCATC	3 cut(s)	81, 192, 427
BpiI	GAAGAC	1 cut(s)	342
BplI	GAGNNNNNCTC	4 cut(s)	85, 117, 281, 313
BpmI	CTGGAG	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse118I	RCCGGY	1 cut(s)	262
BseAI	TCCGGA	1 cut(s)	451
BseDI	CCNNGG	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMII	CTCAG	4 cut(s)	24, 36, 96, 224
BseRI	GAGGAG	2 cut(s)	135, 413
BseXI	GCAGC	3 cut(s)	226, 229, 232
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	5, 305
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	3 cut(s)	69, 263, 452
BslFI	GGGAC	2 cut(s)	149, 175
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	2 cut(s)	149, 175
BsnI	GGCC	2 cut(s)	5, 305
BsoBI	CYCGRG	1 cut(s)	89
Bsp13I	TCCGGA	1 cut(s)	451
Bsp143I	GATC	3 cut(s)	25, 354, 448
BspACI	CCGC	3 cut(s)	131, 318, 383
BspANI	GGCC	2 cut(s)	5, 305
BspCNI	CTCAG	4 cut(s)	23, 35, 95, 223
BspEI	TCCGGA	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	163, 164
BspPI	GGATC	1 cut(s)	443
BsrFI	RCCGGY	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	3 cut(s)	25, 354, 448
BssNI	GRCGYC	1 cut(s)	173
BssSI	CACGAG	1 cut(s)	29
Bst2BI	CACGAG	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	364
BstACI	GRCGYC	1 cut(s)	173
BstDEI	CTNAG	4 cut(s)	10, 22, 82, 210
BstFNI	CGCG	1 cut(s)	131
BstKTI	GATC	3 cut(s)	28, 357, 451
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	3 cut(s)	25, 354, 448
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 211, 220, 253, 326, 383
BstSFI	CTRYAG	1 cut(s)	273
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	3 cut(s)	226, 229, 232
BstV2I	GAAGAC	1 cut(s)	342
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BsuRI	GGCC	2 cut(s)	5, 305
Cfr10I	RCCGGY	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	162
CseI	GACGC	1 cut(s)	181
CviAII	CATG	2 cut(s)	112, 380
CviJI	RGCY	3 cut(s)	5, 305, 377
CviKI_1	RGCY	3 cut(s)	5, 305, 377
DdeI	CTNAG	4 cut(s)	10, 22, 82, 210
DpnI	GATC	3 cut(s)	27, 356, 450
DpnII	GATC	3 cut(s)	25, 354, 448
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
Eco147I	AGGCCT	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	162
FaeI	CATG	2 cut(s)	115, 383
FaiI	YATR	3 cut(s)	113, 275, 381
FaqI	GGGAC	2 cut(s)	149, 175
FatI	CATG	2 cut(s)	111, 379
FauI	CCCGC	1 cut(s)	124
Fnu4HI	GCNGC	4 cut(s)	215, 218, 221, 384
Fsp4HI	GCNGC	4 cut(s)	215, 218, 221, 384
FspBI	CTAG	1 cut(s)	463
GluI	GCNGC	4 cut(s)	215, 218, 221, 384
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	2 cut(s)	5, 305
HapII	CCGG	3 cut(s)	69, 263, 452
HgaI	GACGC	1 cut(s)	181
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	115, 383
HinfI	GANTC	3 cut(s)	34, 80, 98
HpaII	CCGG	3 cut(s)	69, 263, 452
Hpy188I	TCNGA	3 cut(s)	25, 85, 301
Hpy188III	TCNNGA	2 cut(s)	29, 452
Hpy99I	CGWCG	2 cut(s)	175, 262
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 211, 220, 253, 326, 383
HpyF3I	CTNAG	4 cut(s)	10, 22, 82, 210
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	115, 383
KflI	GGGWCCC	1 cut(s)	162
Kpn2I	TCCGGA	1 cut(s)	451
Kzo9I	GATC	3 cut(s)	25, 354, 448
LmnI	GCTCC	2 cut(s)	148, 400
LpnPI	CCDG	3 cut(s)	82, 266, 276
Lsp1109I	GCAGC	3 cut(s)	226, 229, 232
LweI	GCATC	3 cut(s)	81, 192, 427
MaeI	CTAG	1 cut(s)	463
MalI	GATC	3 cut(s)	27, 356, 450
MboI	GATC	3 cut(s)	25, 354, 448
MboII	GAAGA	6 cut(s)	51, 67, 342, 351, 443, 446
MflI	RGATCY	1 cut(s)	448
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	7 cut(s)	87, 156, 219, 295, 373, 391, 421
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	69, 263, 452
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	6 cut(s)	11, 211, 220, 253, 326, 383
NdeII	GATC	3 cut(s)	25, 354, 448
NlaIII	CATG	2 cut(s)	115, 383
NlaIV	GGNNCC	2 cut(s)	163, 164
PceI	AGGCCT	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	2 cut(s)	191, 266
PfeI	GAWTC	2 cut(s)	34, 98
PkrI	GCNGC	4 cut(s)	216, 219, 222, 385
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	162
PspN4I	GGNNCC	2 cut(s)	163, 164
PspPI	GGNCC	1 cut(s)	162
PspPPI	RGGWCCY	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	448
SatI	GCNGC	4 cut(s)	215, 218, 221, 384
Sau3AI	GATC	3 cut(s)	25, 354, 448
Sau96I	GGNCC	1 cut(s)	162
SchI	GAGTC	1 cut(s)	74
SetI	ASST	4 cut(s)	56, 211, 379, 464
SfaNI	GCATC	3 cut(s)	81, 192, 427
SfcI	CTRYAG	1 cut(s)	273
SgrAI	CRCCGGYG	1 cut(s)	262
SinI	GGWCC	1 cut(s)	162
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	3 cut(s)	131, 318, 383
SspMI	CTAG	1 cut(s)	463
StuI	AGGCCT	1 cut(s)	305
TaqI	TCGA	2 cut(s)	78, 353
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	2 cut(s)	34, 98
TseI	GCWGC	3 cut(s)	214, 217, 220
TspDTI	ATGAA	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	162
XspI	CTAG	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.