Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009528.1

Orthogroup ID

OG0018234

Physical Location & Seq

Genomic Coordinates Reverse (-)

55370 .. 55762

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009528.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atggccaacttaacacttttctccgatcacgagattctgatgataccaaacaccttctcttcactcttcggcatcttcgactcaaaacctaagagggattctcttggtttcatggacttgctcagcaatgcgggggactacgctcctctgtttgatttcgagacccaaacgacgttgtctaacttgttgatgatgatgatgatgatgccacctcagcagtcgtcgccgaagagtaagactaactttgaggccttgaactctaccgccaatactgctcttacaacacccaactcgtcttcgatctcgtcctcgtctaacgaagctcatgaggcgaataataatgaggagcaaatcacgacaaaaacagcaaatgaggaagaagatgctgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

130

Amino Acids

14.3

Weight (kDa)

4.24

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018234)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000020140
rosa_multiflora	Rmu_sc0009528.1_g000016 Rmu_sc0034455.1_g000001
rosa_rugosa	Rorug02G0438900
rosa_samantha	Rh1BG083400 Rh2AG392200 Rh2CG378900 Rh4BG035800 Rh5CG329500 Rh7BG076400 Rh7DG079700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	131, 264
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	1 cut(s)	256
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	155
AoxI	GGCC	2 cut(s)	3, 249
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	155
BlpI	GCTNAGC	1 cut(s)	122
BmsI	GCATC	3 cut(s)	81, 195, 373
BpiI	GAAGAC	1 cut(s)	288
BplI	GAGNNNNNCTC	2 cut(s)	85, 117
Bpu10I	CCTNAGC	1 cut(s)	213
Bpu1102I	GCTNAGC	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	136, 227
BseRI	GAGGAG	2 cut(s)	135, 359
BshFI	GGCC	2 cut(s)	5, 251
BslFI	GGGAC	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	5, 251
Bso31I	GGTCTC	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	25, 300
Bsp1720I	GCTNAGC	1 cut(s)	122
BspACI	CCGC	2 cut(s)	131, 264
BspANI	GGCC	2 cut(s)	5, 251
BspCNI	CTCAG	2 cut(s)	135, 226
BspHI	TCATGA	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	133
BssMI	GATC	2 cut(s)	25, 300
BssSI	CACGAG	1 cut(s)	29
Bst2BI	CACGAG	1 cut(s)	29
Bst6I	CTCTTC	3 cut(s)	64, 71, 224
BstDEI	CTNAG	3 cut(s)	90, 122, 213
BstKTI	GATC	2 cut(s)	28, 303
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	25, 300
BstMWI	GCNNNNNNNGC	4 cut(s)	214, 223, 272, 329
BstV2I	GAAGAC	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	5, 251
CciI	TCATGA	1 cut(s)	325
CviAII	CATG	2 cut(s)	112, 326
CviJI	RGCY	3 cut(s)	5, 251, 323
CviKI_1	RGCY	3 cut(s)	5, 251, 323
DdeI	CTNAG	3 cut(s)	90, 122, 213
DpnI	GATC	2 cut(s)	27, 302
DpnII	GATC	2 cut(s)	25, 300
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	64, 71, 224
EarI	CTCTTC	3 cut(s)	64, 71, 224
Eco147I	AGGCCT	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	155
FaeI	CATG	2 cut(s)	115, 329
FaiI	YATR	2 cut(s)	113, 327
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	2 cut(s)	111, 325
FauI	CCCGC	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	5, 251
Hin1II	CATG	2 cut(s)	115, 329
HinfI	GANTC	3 cut(s)	34, 80, 98
Hpy188I	TCNGA	2 cut(s)	25, 39
Hpy188III	TCNNGA	4 cut(s)	29, 160, 326, 355
Hpy99I	CGWCG	2 cut(s)	175, 226
HpyAV	CCTTC	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	4 cut(s)	214, 223, 272, 329
HpyF3I	CTNAG	3 cut(s)	90, 122, 213
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	115, 329
Kzo9I	GATC	2 cut(s)	25, 300
LmnI	GCTCC	2 cut(s)	148, 346
LweI	GCATC	3 cut(s)	81, 195, 373
MaeII	ACGT	1 cut(s)	173
MalI	GATC	2 cut(s)	27, 302
MboI	GATC	2 cut(s)	25, 300
MboII	GAAGA	7 cut(s)	51, 58, 67, 241, 288, 389, 392
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	8 cut(s)	87, 156, 222, 241, 319, 322, 337, 367
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	4 cut(s)	214, 223, 272, 329
NdeII	GATC	2 cut(s)	25, 300
NlaIII	CATG	2 cut(s)	115, 329
PagI	TCATGA	1 cut(s)	325
PceI	AGGCCT	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	34, 98
PflFI	GACNNNGTC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PsyI	GACNNNGTC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	11
Sau3AI	GATC	2 cut(s)	25, 300
SchI	GAGTC	1 cut(s)	74
SetI	ASST	5 cut(s)	56, 91, 176, 214, 325
SfaNI	GCATC	3 cut(s)	81, 195, 373
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	2 cut(s)	131, 264
StuI	AGGCCT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	3 cut(s)	78, 159, 299
TfiI	GAWTC	2 cut(s)	34, 98
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	100
Tth111I	GACNNNGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.