Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018234

Physical Location & Seq

Genomic Coordinates Reverse (-)

51779571 .. 51788530

Gene Structure 8960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG378900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCCAACTCAACACTTTTCTCCAATCACGAGATTCCGATGATACCCAACAACACCTTCCCTTCACTCTCAAGCATCTTCGACTCGGAACCCGAAAGGGGTTTTCTGGGTTTCATGGAGTTGCTCGGCAACATGGACTACGCTCCTGTGGTTGATTTAGGGACCCAAACGATGCCGTCTGACTCGTTGATGACGATGATGATGCCACCTCGGCGGCAGCAGCATCAAACACAAACGCTTTCGTCACCATCACCGATGTCGTCTACAGTGCCGGAGAATGGGACTAACTTTGAGGCCTTGAACTCCAGCGCCAATACTGCTCCTACGACACCCAACTCCTCTTCAATCTCATCCTCGTCTAATGAAGCTCATGCGGCGAATAACAATGAGGAGCAAACCACAACAAAAGCAGGAGATGAGGAAGAAGATGCTGACCAAGATCCGGACAAGACCCAGAAACATCTAGAGCACAAACTGAACTATGGTCTTGAAAGAGTTTGGGCCATTGGGCACATGAAAGGATCATACAAGGTTGCATTTGGTTTTGACAATGGAACCATTATAGTCAAAATGAATGCTTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

195

Amino Acids

21.25

Weight (kDa)

4.67

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018234)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000020140
rosa_multiflora	Rmu_sc0009528.1_g000016 Rmu_sc0034455.1_g000001
rosa_rugosa	Rorug02G0438900
rosa_samantha	Rh1BG083400 Rh2AG392200 Rh2CG378900 Rh4BG035800 Rh5CG329500 Rh7BG076400 Rh7DG079700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	263
AccIII	TCCGGA	1 cut(s)	442
AciI	CCGC	2 cut(s)	214, 374
AclWI	GGATC	2 cut(s)	434, 529
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	3 cut(s)	98, 278, 442
AgsI	TTSAA	3 cut(s)	301, 345, 491
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	1 cut(s)	368
AluI	AGCT	1 cut(s)	368
Alw21I	GWGCWC	1 cut(s)	471
AlwI	GGATC	2 cut(s)	434, 529
Aor13HI	TCCGGA	1 cut(s)	442
AoxI	GGCC	3 cut(s)	3, 294, 501
ApeKI	GCWGC	2 cut(s)	217, 220
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	162, 501
AsuHPI	GGTGA	2 cut(s)	237, 243
AvaII	GGWCC	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	513
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	229, 232
BccI	CCATC	1 cut(s)	256
BceAI	ACGGC	1 cut(s)	160
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	312
BglI	GCCNNNNNGGC	1 cut(s)	211
BisI	GCNGC	4 cut(s)	215, 218, 221, 375
BlsI	GCNGC	4 cut(s)	216, 219, 222, 376
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	162, 501
BmiI	GGNNCC	4 cut(s)	90, 163, 164, 556
BmsI	GCATC	5 cut(s)	84, 162, 192, 232, 418
BpmI	CTGGAG	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	209
BsaWI	WCCGGW	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 278, 442
BseAI	TCCGGA	1 cut(s)	442
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	1 cut(s)	350
BseLI	CCNNNNNNNGG	3 cut(s)	98, 278, 442
BseRI	GAGGAG	2 cut(s)	328, 404
BseSI	GKGCMC	1 cut(s)	513
BseXI	GCAGC	2 cut(s)	229, 232
BshFI	GGCC	3 cut(s)	5, 296, 503
BsiHKAI	GWGCWC	1 cut(s)	471
BsiSI	CCGG	2 cut(s)	272, 443
BslFI	GGGAC	2 cut(s)	175, 295
BslI	CCNNNNNNNGG	3 cut(s)	98, 278, 442
BsmFI	GGGAC	2 cut(s)	175, 295
BsmI	GAATGC	1 cut(s)	580
BsnI	GGCC	3 cut(s)	5, 296, 503
Bsp1286I	GDGCHC	2 cut(s)	471, 513
Bsp13I	TCCGGA	1 cut(s)	442
Bsp143I	GATC	2 cut(s)	439, 521
BspACI	CCGC	2 cut(s)	214, 374
BspANI	GGCC	3 cut(s)	5, 296, 503
BspEI	TCCGGA	1 cut(s)	442
BspLI	GGNNCC	4 cut(s)	90, 163, 164, 556
BspPI	GGATC	2 cut(s)	434, 529
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	2 cut(s)	439, 521
BssSI	CACGAG	1 cut(s)	29
Bst2BI	CACGAG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	350
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	2 cut(s)	442, 524
BstMBI	GATC	2 cut(s)	439, 521
BstMWI	GCNNNNNNNGC	4 cut(s)	211, 220, 317, 374
BstSFI	CTRYAG	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	229, 232
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuRI	GGCC	3 cut(s)	5, 296, 503
BtsCI	GGATG	1 cut(s)	350
BtsIMutI	CAGTG	1 cut(s)	273
CfoI	GCGC	1 cut(s)	311
Cfr13I	GGNCC	2 cut(s)	162, 501
CviAII	CATG	4 cut(s)	115, 133, 371, 514
CviJI	RGCY	4 cut(s)	5, 296, 368, 503
CviKI_1	RGCY	4 cut(s)	5, 296, 368, 503
DpnI	GATC	2 cut(s)	441, 523
DpnII	GATC	2 cut(s)	439, 521
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	346
Eco147I	AGGCCT	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	162
FaeI	CATG	4 cut(s)	118, 136, 374, 517
FaiI	YATR	7 cut(s)	116, 134, 372, 483, 515, 526, 563
FaqI	GGGAC	2 cut(s)	175, 295
FatI	CATG	4 cut(s)	114, 132, 370, 513
FblI	GTMKAC	1 cut(s)	263
Fnu4HI	GCNGC	4 cut(s)	215, 218, 221, 375
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	4 cut(s)	215, 218, 221, 375
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	4 cut(s)	215, 218, 221, 375
GsuI	CTGGAG	1 cut(s)	289
HaeII	RGCGCY	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	5, 296, 503
HapII	CCGG	2 cut(s)	272, 443
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	4 cut(s)	118, 136, 374, 517
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HinfI	GANTC	3 cut(s)	34, 83, 182
HpaII	CCGG	2 cut(s)	272, 443
HphI	GGTGA	2 cut(s)	237, 243
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	3 cut(s)	39, 88, 181
Hpy188III	TCNNGA	4 cut(s)	29, 443, 464, 488
Hpy8I	GTNNAC	1 cut(s)	264
HpyAV	CCTTC	2 cut(s)	67, 72
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	4 cut(s)	211, 220, 317, 374
Hsp92II	CATG	4 cut(s)	118, 136, 374, 517
HspAI	GCGC	1 cut(s)	309
KflI	GGGWCCC	1 cut(s)	162
Kpn2I	TCCGGA	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	439, 521
LmnI	GCTCC	3 cut(s)	148, 325, 391
LpnPI	CCDG	7 cut(s)	92, 159, 285, 319, 396, 456, 467
Lsp1109I	GCAGC	2 cut(s)	229, 232
LweI	GCATC	5 cut(s)	84, 162, 192, 232, 418
MaeI	CTAG	1 cut(s)	464
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	2 cut(s)	441, 523
MboI	GATC	2 cut(s)	439, 521
MboII	GAAGA	4 cut(s)	70, 333, 434, 437
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	2 cut(s)	471, 513
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	77, 176
MnlI	CCTC	6 cut(s)	219, 286, 349, 364, 382, 412
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	442
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	272, 443
Mva1269I	GAATGC	1 cut(s)	580
MwoI	GCNNNNNNNGC	4 cut(s)	211, 220, 317, 374
NdeII	GATC	2 cut(s)	439, 521
NlaIII	CATG	4 cut(s)	118, 136, 374, 517
NlaIV	GGNNCC	4 cut(s)	90, 163, 164, 556
NmeAIII	GCCGAG	2 cut(s)	105, 190
NmuCI	GTSAC	1 cut(s)	243
PceI	AGGCCT	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PctI	GAATGC	1 cut(s)	580
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	4 cut(s)	216, 219, 222, 376
PleI	GAGTC	2 cut(s)	77, 176
PpsI	GAGTC	2 cut(s)	77, 176
PpuMI	RGGWCCY	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	162
PspN4I	GGNNCC	4 cut(s)	90, 163, 164, 556
PspPI	GGNCC	2 cut(s)	162, 501
PspPPI	RGGWCCY	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	439
SatI	GCNGC	4 cut(s)	215, 218, 221, 375
Sau3AI	GATC	2 cut(s)	439, 521
Sau96I	GGNCC	2 cut(s)	162, 501
SchI	GAGTC	2 cut(s)	77, 176
SduI	GDGCHC	2 cut(s)	471, 513
SetI	ASST	4 cut(s)	59, 211, 370, 534
SfaNI	GCATC	5 cut(s)	84, 162, 192, 232, 418
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	2 cut(s)	214, 374
SspMI	CTAG	1 cut(s)	464
StuI	AGGCCT	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	81
TauI	GCSGC	2 cut(s)	217, 377
TfiI	GAWTC	1 cut(s)	34
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	243
TseI	GCWGC	2 cut(s)	217, 220
Tsp45I	GTSAC	1 cut(s)	243
TspDTI	ATGAA	4 cut(s)	103, 378, 530, 587
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	162
XbaI	TCTAGA	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	263
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.