Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0018234

Physical Location & Seq

Genomic Coordinates Reverse (-)

56186425 .. 56187931

Gene Structure 1507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0438900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTCCAAAGAAAGAAGAGTCCGCTAAACGAGAAGTGATGAAGATGAAGTCGTTGGAAGCTGTTATGAAAAACACGAAAAGGGAGGTCAACAAGGGAGCTTGGACAGCTGAGGAAGATCAGAAGCTAGCTGAGGTTACTGCAATTCATGGTGCTAAAAAGTGGAAGTCAATTGCAGCCAAAGCAGGGCTGAATCGGTGTGGTAAGAGTTGCAGGCTAAGATGGCTGAACTATCTAAGACCAAACATCAAGAGAGGCAACATATCTGACCAAGAAGAGGACTTGATTCTCAGGCTGCACAAACTCCTTGGAAACAGGTGGTCTTTGATTGCCGGGAGATTGCCGGGTCGAACAGACAATGAGATAAAGAACTACTGGAACTCTCATTTGAGCAAGAGAATAAACCAGAAAGAGAAACAAAGAAATACTGGAGGAGATGATGATTCAACAAGACAAATCTCCACAGTGGACCAGAGACCTGGTACCCATTTAGGTGAGCAGAATAAAATCCATGGAGAAATGAAACAAGACTCATCATCAGAAGAGGGTACCACTACTACTACTACCACCAGTGCTTCTAATAAAGGAGGTGATGATCATGAAAACTACTCAAACTTAGACATTGATATTGATGACTTCTTTGATTTCTCCAATGAAGGGCCATTCAATTTGGAATGGGTCAACAAGTTCCTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

232

Amino Acids

26.48

Weight (kDa)

8.91

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	32 - 79	6e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	35 - 93	1.2e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	85 - 130	1.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	89 - 137	4.7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018234)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000020140
rosa_multiflora	Rmu_sc0009528.1_g000016 Rmu_sc0034455.1_g000001
rosa_rugosa	Rorug02G0438900
rosa_samantha	Rh1BG083400 Rh2AG392200 Rh2CG378900 Rh4BG035800 Rh5CG329500 Rh7BG076400 Rh7DG079700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	482, 548
AccB1I	GGYRCC	2 cut(s)	482, 548
AciI	CCGC	1 cut(s)	24
AfaI	GTAC	2 cut(s)	484, 550
AfiI	CCNNNNNNNGG	3 cut(s)	186, 277, 657
AgsI	TTSAA	2 cut(s)	447, 667
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	5 cut(s)	62, 101, 110, 127, 131
AluI	AGCT	5 cut(s)	62, 101, 110, 127, 131
Alw26I	GTCTC	1 cut(s)	469
AoxI	GGCC	1 cut(s)	659
ApeKI	GCWGC	2 cut(s)	176, 295
Asp718I	GGTACC	2 cut(s)	482, 548
AspS9I	GGNCC	2 cut(s)	469, 659
AsuC2I	CCSGG	2 cut(s)	334, 345
AsuHPI	GGTGA	2 cut(s)	506, 602
AsuNHI	GCTAGC	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	469
BanI	GGYRCC	2 cut(s)	482, 548
BbvCI	CCTCAGC	2 cut(s)	111, 132
BbvI	GCAGC	2 cut(s)	188, 282
BccI	CCATC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	480
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	2 cut(s)	334, 345
BcoDI	GTCTC	1 cut(s)	469
BfaI	CTAG	2 cut(s)	128, 697
BisI	GCNGC	2 cut(s)	177, 296
BlsI	GCNGC	2 cut(s)	178, 297
Bme1390I	CCNGG	3 cut(s)	334, 345, 480
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	2 cut(s)	469, 659
BmiI	GGNNCC	3 cut(s)	6, 484, 550
BmrFI	CCNGG	3 cut(s)	334, 345, 480
BmtI	GCTAGC	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	2 cut(s)	111, 132
BpuMI	CCSGG	2 cut(s)	334, 345
BsaI	GGTCTC	1 cut(s)	469
BsaJI	CCNNGG	2 cut(s)	307, 511
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 277, 657
Bse1I	ACTGG	3 cut(s)	380, 433, 570
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	307, 511
BseLI	CCNNNNNNNGG	3 cut(s)	186, 277, 657
BseMII	CTCAG	3 cut(s)	102, 123, 304
BseNI	ACTGG	3 cut(s)	380, 433, 570
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	188, 282
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	661
BshNI	GGYRCC	2 cut(s)	482, 548
BsiSI	CCGG	2 cut(s)	333, 344
BslI	CCNNNNNNNGG	3 cut(s)	186, 277, 657
BsmAI	GTCTC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	661
Bso31I	GGTCTC	1 cut(s)	469
Bsp143I	GATC	2 cut(s)	118, 595
Bsp19I	CCATGG	1 cut(s)	511
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	661
BspCNI	CTCAG	3 cut(s)	103, 124, 303
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	3 cut(s)	6, 484, 550
BspOI	GCTAGC	1 cut(s)	131
BspT107I	GGYRCC	2 cut(s)	482, 548
BspTNI	GGTCTC	1 cut(s)	469
BsrI	ACTGG	3 cut(s)	380, 433, 570
BssECI	CCNNGG	2 cut(s)	307, 511
BssMI	GATC	2 cut(s)	118, 595
BssT1I	CCWWGG	2 cut(s)	307, 511
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	3 cut(s)	12, 270, 537
BstC8I	GCNNGC	2 cut(s)	129, 215
BstDEI	CTNAG	6 cut(s)	111, 132, 218, 236, 290, 616
BstDSI	CCRYGG	1 cut(s)	511
BstKTI	GATC	2 cut(s)	121, 598
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	2 cut(s)	118, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 182, 223
BstNI	CCWGG	1 cut(s)	480
BstSCI	CCNGG	3 cut(s)	332, 343, 478
BstV1I	GCAGC	2 cut(s)	188, 282
BstXI	CCANNNNNNTGG	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	661
BtgI	CCRYGG	1 cut(s)	511
BtsIMutI	CAGTG	2 cut(s)	471, 577
Cac8I	GCNNGC	2 cut(s)	129, 215
CciI	TCATGA	1 cut(s)	598
Cfr13I	GGNCC	2 cut(s)	469, 659
CsiI	ACCWGGT	1 cut(s)	478
Csp6I	GTAC	2 cut(s)	483, 549
CviAII	CATG	3 cut(s)	149, 512, 599
CviQI	GTAC	2 cut(s)	483, 549
DdeI	CTNAG	6 cut(s)	111, 132, 218, 236, 290, 616
DpnI	GATC	2 cut(s)	120, 597
DpnII	GATC	2 cut(s)	118, 595
Eam1104I	CTCTTC	3 cut(s)	12, 270, 537
EarI	CTCTTC	3 cut(s)	12, 270, 537
Eco130I	CCWWGG	2 cut(s)	307, 511
Eco31I	GGTCTC	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	2 cut(s)	307, 511
ErhI	CCWWGG	2 cut(s)	307, 511
FaeI	CATG	3 cut(s)	152, 515, 602
FaiI	YATR	5 cut(s)	68, 150, 263, 513, 600
FatI	CATG	3 cut(s)	148, 511, 598
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	2 cut(s)	177, 296
Fsp4HI	GCNGC	2 cut(s)	177, 296
FspBI	CTAG	2 cut(s)	128, 697
GluI	GCNGC	2 cut(s)	177, 296
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	661
HapII	CCGG	2 cut(s)	333, 344
Hin1II	CATG	3 cut(s)	152, 515, 602
HincII	GTYRAC	2 cut(s)	91, 682
HindII	GTYRAC	2 cut(s)	91, 682
HinfI	GANTC	5 cut(s)	20, 193, 286, 443, 530
HpaII	CCGG	2 cut(s)	333, 344
HphI	GGTGA	2 cut(s)	506, 602
Hpy166II	GTNNAC	3 cut(s)	91, 469, 682
Hpy188I	TCNGA	3 cut(s)	123, 268, 541
Hpy188III	TCNNGA	2 cut(s)	250, 599
Hpy8I	GTNNAC	3 cut(s)	91, 469, 682
HpyAV	CCTTC	1 cut(s)	650
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	4 cut(s)	143, 176, 213, 298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 182, 223
HpyF3I	CTNAG	6 cut(s)	111, 132, 218, 236, 290, 616
Hsp92II	CATG	3 cut(s)	152, 515, 602
KpnI	GGTACC	2 cut(s)	486, 552
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	2 cut(s)	118, 595
LmnI	GCTCC	2 cut(s)	10, 98
Lsp1109I	GCAGC	2 cut(s)	188, 282
MabI	ACCWGGT	1 cut(s)	478
MaeI	CTAG	2 cut(s)	128, 697
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	120, 597
MboI	GATC	2 cut(s)	118, 595
MboII	GAAGA	5 cut(s)	29, 55, 128, 287, 554
MfeI	CAATTG	1 cut(s)	171
MluCI	AATT	3 cut(s)	144, 171, 667
MlyI	GAGTC	2 cut(s)	29, 524
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	8 cut(s)	79, 106, 127, 248, 271, 425, 538, 581
MslI	CAYNNNNRTG	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	2 cut(s)	333, 344
MspR9I	CCNGG	3 cut(s)	334, 345, 480
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	480
MwoI	GCNNNNNNNGC	3 cut(s)	107, 182, 223
NciI	CCSGG	2 cut(s)	334, 345
NcoI	CCATGG	1 cut(s)	511
NdeII	GATC	2 cut(s)	118, 595
NheI	GCTAGC	1 cut(s)	127
NlaIII	CATG	3 cut(s)	152, 515, 602
NlaIV	GGNNCC	3 cut(s)	6, 484, 550
PagI	TCATGA	1 cut(s)	598
PfeI	GAWTC	3 cut(s)	193, 286, 443
PkrI	GCNGC	2 cut(s)	178, 297
PleI	GAGTC	2 cut(s)	28, 524
PpsI	GAGTC	2 cut(s)	28, 524
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	3 cut(s)	6, 484, 550
PspPI	GGNCC	2 cut(s)	469, 659
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	484, 550
RsaNI	GTAC	2 cut(s)	483, 549
RseI	CAYNNNNRTG	1 cut(s)	492
SatI	GCNGC	2 cut(s)	177, 296
Sau3AI	GATC	2 cut(s)	118, 595
Sau96I	GGNCC	2 cut(s)	469, 659
SchI	GAGTC	2 cut(s)	29, 524
ScrFI	CCNGG	3 cut(s)	334, 345, 480
SexAI	ACCWGGT	1 cut(s)	478
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	492
Sse9I	AATT	3 cut(s)	144, 171, 667
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	2 cut(s)	128, 697
StyD4I	CCNGG	3 cut(s)	332, 343, 478
StyI	CCWWGG	2 cut(s)	307, 511
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	1 cut(s)	349
TasI	AATT	3 cut(s)	144, 171, 667
TfiI	GAWTC	3 cut(s)	193, 286, 443
TscAI	CASTG	2 cut(s)	471, 577
TseI	GCWGC	2 cut(s)	176, 295
TspDTI	ATGAA	7 cut(s)	56, 62, 83, 137, 536, 615, 669
TspRI	CASTG	2 cut(s)	471, 577
VpaK11BI	GGWCC	1 cut(s)	469
XspI	CTAG	2 cut(s)	128, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.