Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0018234

Physical Location & Seq

Genomic Coordinates Forward (+)

5217970 .. 5218320

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG076400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAGTTGCTCGGCAACACGGACTACGCTCCTGTGGTTGATTTCGGGACCCAAACGATGCCGTCTGACTCGTTGATGACGATGATGATGCCACCTCGGTGGCAGCAGCATCAAACACAAGCGCTTCCGTCACCGTCGCCGGTGTCGTCTACAGTGCCGGAGAATGGGACTAACTTTGAGGCCTTGAACTCCAGCGCCAATACTGCTCCTACGACACCCAACTCCTCTTCGATCTCATCCTCGTCTAATGAAGCTCATGCGGCGAATAATAATGAGGAGCAAACCACAACAAAAGCAGGAGATGAGGAAGAAGATGCTGACCAAGATTCGGACAAGACCCAGAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

116

Amino Acids

12.44

Weight (kDa)

4.05

Isoelectric Point (pI)

67.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018234)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000020140
rosa_multiflora	Rmu_sc0009528.1_g000016 Rmu_sc0034455.1_g000001
rosa_rugosa	Rorug02G0438900
rosa_samantha	Rh1BG083400 Rh2AG392200 Rh2CG378900 Rh4BG035800 Rh5CG329500 Rh7BG076400 Rh7DG079700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	149
AciI	CCGC	1 cut(s)	260
AfeI	AGCGCT	1 cut(s)	123
AfiI	CCNNNNNNNGG	2 cut(s)	164, 328
AgsI	TTSAA	1 cut(s)	187
AleI	CACNNNNGTG	1 cut(s)	97
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Aor51HI	AGCGCT	1 cut(s)	123
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	103, 106
AspLEI	GCGC	2 cut(s)	124, 197
AspS9I	GGNCC	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	115, 118
BceAI	ACGGC	1 cut(s)	46
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BfmI	CTRYAG	1 cut(s)	150
BfoI	RGCGCY	2 cut(s)	125, 198
BisI	GCNGC	3 cut(s)	104, 107, 261
BlsI	GCNGC	3 cut(s)	105, 108, 262
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	2 cut(s)	49, 50
BmsI	GCATC	4 cut(s)	48, 78, 118, 304
BpmI	CTGGAG	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 328
Bse118I	RCCGGY	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	2 cut(s)	164, 328
BseRI	GAGGAG	2 cut(s)	214, 290
BseXI	GCAGC	2 cut(s)	115, 118
BshFI	GGCC	1 cut(s)	182
BsiSI	CCGG	2 cut(s)	140, 158
BslFI	GGGAC	2 cut(s)	61, 181
BslI	CCNNNNNNNGG	2 cut(s)	164, 328
BsmFI	GGGAC	2 cut(s)	61, 181
BsnI	GGCC	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	231
BspACI	CCGC	1 cut(s)	260
BspANI	GGCC	1 cut(s)	182
BspLI	GGNNCC	2 cut(s)	49, 50
BsrFI	RCCGGY	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	1 cut(s)	231
Bst4CI	ACNGT	3 cut(s)	135, 154, 348
Bst6I	CTCTTC	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	236
BstH2I	RGCGCY	2 cut(s)	125, 198
BstHHI	GCGC	2 cut(s)	124, 197
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 260
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	115, 118
BstXI	CCANNNNNNTGG	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	159
CfoI	GCGC	2 cut(s)	124, 197
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	48
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	2 cut(s)	182, 254
CviKI_1	RGCY	2 cut(s)	182, 254
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
Eco147I	AGGCCT	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	48
Eco47III	AGCGCT	1 cut(s)	123
EcoO109I	RGGNCCY	1 cut(s)	48
FaeI	CATG	1 cut(s)	260
FaiI	YATR	1 cut(s)	258
FaqI	GGGAC	2 cut(s)	61, 181
FatI	CATG	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	3 cut(s)	104, 107, 261
FokI	GGATG	1 cut(s)	223
Fsp4HI	GCNGC	3 cut(s)	104, 107, 261
GlaI	GCGC	2 cut(s)	123, 196
GluI	GCNGC	3 cut(s)	104, 107, 261
GsuI	CTGGAG	1 cut(s)	175
HaeII	RGCGCY	2 cut(s)	125, 198
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	2 cut(s)	140, 158
HhaI	GCGC	2 cut(s)	124, 197
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	2 cut(s)	122, 195
HinP1I	GCGC	2 cut(s)	122, 195
HinfI	GANTC	2 cut(s)	68, 326
HpaII	CCGG	2 cut(s)	140, 158
HphI	GGTGA	1 cut(s)	123
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	2 cut(s)	67, 331
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	1 cut(s)	139
HpyCH4III	ACNGT	3 cut(s)	135, 154, 348
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 260
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	2 cut(s)	122, 195
KflI	GGGWCCC	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	231
LmnI	GCTCC	3 cut(s)	34, 211, 277
LpnPI	CCDG	5 cut(s)	45, 153, 171, 205, 282
Lsp1109I	GCAGC	2 cut(s)	115, 118
LweI	GCATC	4 cut(s)	48, 78, 118, 304
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	3 cut(s)	219, 320, 323
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	6 cut(s)	105, 172, 235, 250, 268, 298
MslI	CAYNNNNRTG	1 cut(s)	97
MspI	CCGG	2 cut(s)	140, 158
MwoI	GCNNNNNNNGC	2 cut(s)	203, 260
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	2 cut(s)	49, 50
NmuCI	GTSAC	1 cut(s)	129
OliI	CACNNNNGTG	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	2 cut(s)	77, 143
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	105, 108, 262
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PpuMI	RGGWCCY	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	48
PspN4I	GGNNCC	2 cut(s)	49, 50
PspPI	GGNCC	1 cut(s)	48
PspPPI	RGGWCCY	1 cut(s)	48
RseI	CAYNNNNRTG	1 cut(s)	97
SatI	GCNGC	3 cut(s)	104, 107, 261
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	62
SetI	ASST	2 cut(s)	97, 256
SfaNI	GCATC	4 cut(s)	48, 78, 118, 304
SfcI	CTRYAG	1 cut(s)	150
SgrAI	CRCCGGYG	1 cut(s)	139
SinI	GGWCC	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	97
SseBI	AGGCCT	1 cut(s)	182
SsiI	CCGC	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	182
TaaI	ACNGT	3 cut(s)	135, 154, 348
TaqI	TCGA	1 cut(s)	230
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	326
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	129
TseI	GCWGC	2 cut(s)	103, 106
Tsp45I	GTSAC	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	264
TspGWI	ACGGA	2 cut(s)	35, 117
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.