Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014863

Physical Location & Seq

Genomic Coordinates Forward (+)

68024614 .. 68027571

Gene Structure 2958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020728

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAAGCTCCTTCTCCTAGAGTCTGCAACAAAGCTCCCACAGAGACTTGGACTTTCCAGGAGATTCTTGATTGTGCCACTCCCTCTTCCATTTTCTCGCCCTCTCTCACCTCCTAAACACCACCACCTCTCTTTCCCCAAAACCCGCATCCCTACATTCGCCACCATCACCAAGTCGTCATTCCCCGTCATCGAGCACATCGTCCTCTTCAAGGTCAAAGACAACACCAATCCCTCCAAGGTCAACGGCTGCTCAGATCCGCCGCCTCCCTCCATCGTTTTGTCACCTCTGGGTTCCGGGTCGGATAAAGAGAATCTCAGCCTCTTTATCCGGGACCTCTTCACTCGCCTGCAAATCGGCGGCATCGAGTTCAAGAAGAAGGCTTTGGAGTCTCAGCTTCAGCTTCTCGAAGACGACGACAAGGCCGTCGATGGGATTCAATCGGCAACTTTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

153

Amino Acids

16.86

Weight (kDa)

9.76

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014863)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0211441
rosa_laevigata	RLG00000020728
rosa_multiflora	Rmu_sc0002709.1_g000026 Rmu_sc0004199.1_g000043 Rmu_sc0006986.1_g000001 Rmu_sc0028901.1_g000002
rosa_samantha	Rh1AG349000 Rh1AG369300 Rh1BG138000 Rh2BG344400 Rh3CG285500 Rh3DG281100 Rh4BG126100 Rh6CG232400 Rh7AG458300 Rh7DG248200 Rh7DG263600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	425
AciI	CCGC	4 cut(s)	145, 260, 263, 360
AclWI	GGATC	1 cut(s)	251
AcuI	CTGAAG	1 cut(s)	383
AfiI	CCNNNNNNNGG	2 cut(s)	211, 432
AgsI	TTSAA	3 cut(s)	211, 373, 440
AjnI	CCWGG	1 cut(s)	56
AjuI	GAANNNNNNNTTGG	4 cut(s)	164, 196, 368, 400
AluBI	AGCT	4 cut(s)	7, 34, 397, 403
AluI	AGCT	4 cut(s)	7, 34, 397, 403
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	2 cut(s)	37, 396
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	334
AsuC2I	CCSGG	2 cut(s)	298, 332
AsuHPI	GGTGA	3 cut(s)	99, 160, 276
AvaII	GGWCC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	3 cut(s)	173, 281, 425
BceAI	ACGGC	2 cut(s)	262, 410
BciT130I	CCWGG	1 cut(s)	58
BcnI	CCSGG	2 cut(s)	298, 332
BcoDI	GTCTC	2 cut(s)	37, 396
BfaI	CTAG	1 cut(s)	17
BisI	GCNGC	3 cut(s)	250, 263, 361
BlsI	GCNGC	3 cut(s)	251, 264, 362
Bme1390I	CCNGG	3 cut(s)	58, 298, 332
Bme18I	GGWCC	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	2 cut(s)	295, 335
BmrFI	CCNGG	3 cut(s)	58, 298, 332
BmsI	GCATC	2 cut(s)	156, 372
BpiI	GAAGAC	1 cut(s)	417
BpuMI	CCSGG	2 cut(s)	298, 332
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 432
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	211, 432
BseMII	CTCAG	3 cut(s)	267, 331, 407
BseXI	GCAGC	1 cut(s)	236
BshFI	GGCC	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	297, 331
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	211, 432
BsmAI	GTCTC	2 cut(s)	37, 396
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	4 cut(s)	145, 260, 263, 360
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	3 cut(s)	266, 330, 406
BspLI	GGNNCC	2 cut(s)	295, 335
BspPI	GGATC	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	58
Bst6I	CTCTTC	3 cut(s)	90, 212, 344
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	3 cut(s)	253, 317, 393
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	2 cut(s)	37, 396
BstMBI	GATC	1 cut(s)	256
BstNI	CCWGG	1 cut(s)	58
BstSCI	CCNGG	3 cut(s)	56, 296, 330
BstV1I	GCAGC	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	334
CviJI	RGCY	8 cut(s)	7, 34, 249, 321, 383, 397, 403, 425
CviKI_1	RGCY	8 cut(s)	7, 34, 249, 321, 383, 397, 403, 425
DdeI	CTNAG	3 cut(s)	253, 317, 393
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
DraI	TTTAAA	1 cut(s)	453
DrdI	GACNNNNNNGTC	1 cut(s)	425
DseDI	GACNNNNNNGTC	1 cut(s)	425
Eam1104I	CTCTTC	3 cut(s)	90, 212, 344
EarI	CTCTTC	3 cut(s)	90, 212, 344
EciI	GGCGGA	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	383
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaqI	GGGAC	1 cut(s)	347
FauI	CCCGC	1 cut(s)	152
Fnu4HI	GCNGC	3 cut(s)	250, 263, 361
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	3 cut(s)	250, 263, 361
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	3 cut(s)	250, 263, 361
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	2 cut(s)	297, 331
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	5 cut(s)	20, 63, 313, 389, 436
HpaII	CCGG	2 cut(s)	297, 331
HphI	GGTGA	3 cut(s)	99, 160, 276
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	256, 304
Hpy188III	TCNNGA	3 cut(s)	67, 373, 407
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	2 cut(s)	419, 431
HpyAV	CCTTC	2 cut(s)	20, 373
HpyCH4V	TGCA	2 cut(s)	26, 352
HpyF3I	CTNAG	3 cut(s)	253, 317, 393
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	12, 39
LpnPI	CCDG	6 cut(s)	43, 70, 275, 310, 344, 362
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	2 cut(s)	156, 372
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	282
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	5 cut(s)	77, 199, 331, 388, 422
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	198
MlyI	GAGTC	2 cut(s)	29, 398
MmeI	TCCRAC	1 cut(s)	282
MseI	TTAA	1 cut(s)	452
MspI	CCGG	2 cut(s)	297, 331
MspR9I	CCNGG	3 cut(s)	58, 298, 332
MvaI	CCWGG	1 cut(s)	58
NciI	CCSGG	2 cut(s)	298, 332
NdeII	GATC	1 cut(s)	256
NlaIV	GGNNCC	2 cut(s)	295, 335
NmuCI	GTSAC	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	4 cut(s)	198, 363, 414, 423
PfeI	GAWTC	3 cut(s)	63, 313, 436
PfoI	TCCNGGA	2 cut(s)	56, 330
PkrI	GCNGC	3 cut(s)	251, 264, 362
PleI	GAGTC	2 cut(s)	28, 397
PpsI	GAGTC	2 cut(s)	28, 397
PpuMI	RGGWCCY	1 cut(s)	334
Psp5II	RGGWCCY	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	295, 335
PspPI	GGNCC	1 cut(s)	334
PspPPI	RGGWCCY	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	3 cut(s)	250, 263, 361
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	1 cut(s)	334
SchI	GAGTC	2 cut(s)	29, 398
ScrFI	CCNGG	3 cut(s)	58, 298, 332
SduI	GDGCHC	1 cut(s)	198
SfaNI	GCATC	2 cut(s)	156, 372
SinI	GGWCC	1 cut(s)	334
SsiI	CCGC	4 cut(s)	145, 260, 263, 360
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	3 cut(s)	56, 296, 330
StyI	CCWWGG	1 cut(s)	237
TaqI	TCGA	4 cut(s)	192, 366, 408, 429
TauI	GCSGC	2 cut(s)	265, 363
TfiI	GAWTC	3 cut(s)	63, 313, 436
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TseFI	GTSAC	1 cut(s)	282
TseI	GCWGC	1 cut(s)	249
Tsp45I	GTSAC	1 cut(s)	282
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	334
XagI	CCTNNNNNAGG	1 cut(s)	209
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.