Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0014863

Physical Location & Seq

Genomic Coordinates Reverse (-)

21106349 .. 21106636

Gene Structure 288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG126100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCGTCATTCCCCGTCGTCGAGCACATCGTCCTCTTCAAGGTCAAAGACAACACCAATCCCTCCAAGGTCAACGGCTGCTCAGATTTGCCGCGTCCCTCCATCATTTTGTCGCATCTGGGTTCCGGGTCGGATAAAGAGAATCTCAGCCTCTTTATCCAGGACCTCTTCACTCGGCTGCAAATCGGTGGCATCGAGTTCAAGAAGAAGGCTTTGGAGTCTCAGCTTCAGCTTCTCGAAGACGACGACGAGGCCGTCGATGGGATTCAATCGGCAACTTTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

95

Amino Acids

10.46

Weight (kDa)

4.99

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014863)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0211441
rosa_laevigata	RLG00000020728
rosa_multiflora	Rmu_sc0002709.1_g000026 Rmu_sc0004199.1_g000043 Rmu_sc0006986.1_g000001 Rmu_sc0028901.1_g000002
rosa_samantha	Rh1AG349000 Rh1AG369300 Rh1BG138000 Rh2BG344400 Rh3CG285500 Rh3DG281100 Rh4BG126100 Rh6CG232400 Rh7AG458300 Rh7DG248200 Rh7DG263600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AccII	CGCG	1 cut(s)	94
AciI	CCGC	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	40, 261
AgsI	TTSAA	3 cut(s)	40, 202, 269
AjnI	CCWGG	1 cut(s)	159
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	2 cut(s)	226, 232
AluI	AGCT	2 cut(s)	226, 232
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	225
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	78, 178
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	65, 165
BccI	CCATC	2 cut(s)	110, 254
BceAI	ACGGC	2 cut(s)	91, 239
BciT130I	CCWGG	1 cut(s)	161
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	225
BisI	GCNGC	3 cut(s)	79, 92, 179
BlsI	GCNGC	3 cut(s)	80, 93, 180
Bme1390I	CCNGG	2 cut(s)	127, 161
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	127, 161
BmsI	GCATC	2 cut(s)	124, 201
BpiI	GAAGAC	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 261
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	40, 261
BseMII	CTCAG	3 cut(s)	96, 160, 236
BseXI	GCAGC	2 cut(s)	65, 165
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	40, 261
BsmAI	GTCTC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	27
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	3 cut(s)	95, 159, 235
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	161
Bst6I	CTCTTC	2 cut(s)	41, 173
BstDEI	CTNAG	3 cut(s)	82, 146, 222
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstFNI	CGCG	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	225
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	2 cut(s)	125, 159
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	65, 165
BstV2I	GAAGAC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	83
CviJI	RGCY	7 cut(s)	78, 150, 178, 212, 226, 232, 254
CviKI_1	RGCY	7 cut(s)	78, 150, 178, 212, 226, 232, 254
DdeI	CTNAG	3 cut(s)	82, 146, 222
DraI	TTTAAA	1 cut(s)	282
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eam1104I	CTCTTC	2 cut(s)	41, 173
EarI	CTCTTC	2 cut(s)	41, 173
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaqI	GGGAC	1 cut(s)	81
Fnu4HI	GCNGC	3 cut(s)	79, 92, 179
Fsp4HI	GCNGC	3 cut(s)	79, 92, 179
GluI	GCNGC	3 cut(s)	79, 92, 179
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	3 cut(s)	142, 218, 265
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	85, 133
Hpy188III	TCNNGA	2 cut(s)	202, 236
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	5 cut(s)	20, 23, 248, 251, 260
HpyAV	CCTTC	1 cut(s)	202
HpyCH4V	TGCA	1 cut(s)	181
HpyF3I	CTNAG	3 cut(s)	82, 146, 222
LpnPI	CCDG	4 cut(s)	104, 139, 146, 173
Lsp1109I	GCAGC	2 cut(s)	65, 165
LweI	GCATC	2 cut(s)	124, 201
MboII	GAAGA	4 cut(s)	28, 160, 217, 251
MhlI	GDGCHC	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	6 cut(s)	44, 73, 109, 161, 176, 244
MseI	TTAA	1 cut(s)	281
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	127, 161
MvaI	CCWGG	1 cut(s)	161
MvnI	CGCG	1 cut(s)	94
NciI	CCSGG	1 cut(s)	127
NlaIV	GGNNCC	1 cut(s)	124
NmeAIII	GCCGAG	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	5 cut(s)	27, 192, 243, 252, 255
PfeI	GAWTC	2 cut(s)	142, 265
PfoI	TCCNGGA	1 cut(s)	159
PkrI	GCNGC	3 cut(s)	80, 93, 180
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	163
PspPPI	RGGWCCY	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	3 cut(s)	79, 92, 179
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	127, 161
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	5 cut(s)	45, 72, 168, 228, 234
SfaNI	GCATC	2 cut(s)	124, 201
SinI	GGWCC	1 cut(s)	163
SsiI	CCGC	1 cut(s)	92
StyD4I	CCNGG	2 cut(s)	125, 159
StyI	CCWWGG	1 cut(s)	66
TaqI	TCGA	4 cut(s)	21, 195, 237, 258
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	2 cut(s)	142, 265
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseI	GCWGC	2 cut(s)	78, 178
VpaK11BI	GGWCC	1 cut(s)	163
XagI	CCTNNNNNAGG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.