Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0014863

Physical Location & Seq

Genomic Coordinates Forward (+)

62967306 .. 62967605

Gene Structure 300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG458300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTCGTCATTCCCAGTCGTCGAGTACATCGTCCTCTTCATGGTCAAGGAAAACACCAATCCCTCCAAGGTCAACGGCTGCTCAGATCTGCCGCGTCCCTCCATCGTTTTGTTGCATCTGGGTTCCTGGTCGGATAAAGAGAATCTCAGCCTCTTTATCCGGGACCTCTTCGCTCGGCTACAAATCAGCGGCATCGAGTTCAAGAAGAAGGCTTTGGAGTCTCAGCTTCAGCCTCTCGAAGATGACGAAAAGACCGCTTGCTCGACAAGGCTGTCGATGGGATTCAATTGGCAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

99

Amino Acids

11.28

Weight (kDa)

5.76

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014863)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0211441
rosa_laevigata	RLG00000020728
rosa_multiflora	Rmu_sc0002709.1_g000026 Rmu_sc0004199.1_g000043 Rmu_sc0006986.1_g000001 Rmu_sc0028901.1_g000002
rosa_samantha	Rh1AG349000 Rh1AG369300 Rh1BG138000 Rh2BG344400 Rh3CG285500 Rh3DG281100 Rh4BG126100 Rh6CG232400 Rh7AG458300 Rh7DG248200 Rh7DG263600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	271
AccII	CGCG	1 cut(s)	94
AciI	CCGC	3 cut(s)	92, 189, 255
AcuI	CTGAAG	1 cut(s)	212
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	2 cut(s)	202, 286
AjnI	CCWGG	1 cut(s)	125
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	2 cut(s)	110, 271
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	225
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	3 cut(s)	79, 92, 190
BlsI	GCNGC	3 cut(s)	80, 93, 191
Bme1390I	CCNGG	2 cut(s)	127, 161
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	124, 164
BmrFI	CCNGG	2 cut(s)	127, 161
BmrI	ACTGGG	1 cut(s)	8
BmsI	GCATC	2 cut(s)	124, 201
BmuI	ACTGGG	1 cut(s)	8
BpuMI	CCSGG	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	3 cut(s)	96, 160, 236
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	2 cut(s)	81, 176
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	225
BsmFI	GGGAC	2 cut(s)	81, 176
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	3 cut(s)	92, 189, 255
BspCNI	CTCAG	3 cut(s)	95, 159, 235
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	124, 164
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	127
Bst6I	CTCTTC	2 cut(s)	41, 173
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	3 cut(s)	82, 146, 222
BstFNI	CGCG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	85
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	2 cut(s)	125, 159
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	7 cut(s)	78, 150, 178, 212, 226, 232, 271
CviKI_1	RGCY	7 cut(s)	78, 150, 178, 212, 226, 232, 271
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	3 cut(s)	82, 146, 222
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
DrdI	GACNNNNNNGTC	1 cut(s)	271
DseDI	GACNNNNNNGTC	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	41, 173
EarI	CTCTTC	2 cut(s)	41, 173
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	1 cut(s)	43
FaiI	YATR	1 cut(s)	41
FaqI	GGGAC	2 cut(s)	81, 176
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	79, 92, 190
Fsp4HI	GCNGC	3 cut(s)	79, 92, 190
GluI	GCNGC	3 cut(s)	79, 92, 190
HapII	CCGG	1 cut(s)	160
HgaI	GACGC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	3 cut(s)	142, 218, 282
HpaII	CCGG	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	85, 133
Hpy188III	TCNNGA	2 cut(s)	202, 236
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	202
HpyCH4V	TGCA	1 cut(s)	115
HpyF3I	CTNAG	3 cut(s)	82, 146, 222
Hsp92II	CATG	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	5 cut(s)	27, 104, 112, 139, 173
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	2 cut(s)	124, 201
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	4 cut(s)	28, 160, 217, 251
MfeI	CAATTG	1 cut(s)	286
MflI	RGATCY	1 cut(s)	85
MluCI	AATT	1 cut(s)	286
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	6 cut(s)	44, 73, 109, 161, 176, 243
MseI	TTAA	1 cut(s)	298
MspA1I	CMGCKG	1 cut(s)	189
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	2 cut(s)	127, 161
MunI	CAATTG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	127
MvnI	CGCG	1 cut(s)	94
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	2 cut(s)	124, 164
NmeAIII	GCCGAG	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 243
PfeI	GAWTC	2 cut(s)	142, 282
PfoI	TCCNGGA	1 cut(s)	159
PkrI	GCNGC	3 cut(s)	80, 93, 191
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	2 cut(s)	124, 164
PspPI	GGNCC	1 cut(s)	163
PspPPI	RGGWCCY	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	298
SatI	GCNGC	3 cut(s)	79, 92, 190
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	127, 161
SetI	ASST	3 cut(s)	72, 168, 228
SfaNI	GCATC	2 cut(s)	124, 201
SinI	GGWCC	1 cut(s)	163
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	3 cut(s)	92, 189, 255
StyD4I	CCNGG	2 cut(s)	125, 159
StyI	CCWWGG	1 cut(s)	66
TaqI	TCGA	5 cut(s)	21, 195, 237, 263, 275
TasI	AATT	1 cut(s)	286
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	2 cut(s)	94, 192
TfiI	GAWTC	2 cut(s)	142, 282
Tru1I	TTAA	1 cut(s)	298
Tru9I	TTAA	1 cut(s)	298
TseI	GCWGC	1 cut(s)	78
TspDTI	ATGAA	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.