Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014863

Physical Location & Seq

Genomic Coordinates Reverse (-)

28545193 .. 28545502

Gene Structure 310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG281100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCGTCATTCCCTGTCGTTGAGCACATCGTCCTCTTCAAGGTCAAAGACAACACCAATCCCTCCAAGGTCAACGGCTGCTCAGATCCACCGCGTCCCTCCATCGTTTTGTCACCTCTGGGTTCCTGGTCGGATAAAGAGAATATCAGCCTCTTTATCAGGGACCTCTTCACTCTGCTGCAAATCGGCGACATCGAGTTCAAGAAGAAGGCTTTGGAGTCTCAGCTTCAGCTTCTCGAAGACGACAACAAGGTCGTCGATGGGATTCAATCGACAACTTTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

95

Amino Acids

10.61

Weight (kDa)

5.25

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014863)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0211441
rosa_laevigata	RLG00000020728
rosa_multiflora	Rmu_sc0002709.1_g000026 Rmu_sc0004199.1_g000043 Rmu_sc0006986.1_g000001 Rmu_sc0028901.1_g000002
rosa_samantha	Rh1AG349000 Rh1AG369300 Rh1BG138000 Rh2BG344400 Rh3CG285500 Rh3DG281100 Rh4BG126100 Rh6CG232400 Rh7AG458300 Rh7DG248200 Rh7DG263600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AccII	CGCG	1 cut(s)	94
AciI	CCGC	1 cut(s)	92
AclWI	GGATC	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	3 cut(s)	40, 202, 269
AjnI	CCWGG	1 cut(s)	125
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	2 cut(s)	226, 232
AluI	AGCT	2 cut(s)	226, 232
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	78, 178
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	65, 165
BccI	CCATC	2 cut(s)	110, 254
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	225
BisI	GCNGC	2 cut(s)	79, 179
BlsI	GCNGC	2 cut(s)	80, 180
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	124, 164
BmrFI	CCNGG	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	2 cut(s)	96, 236
BseXI	GCAGC	2 cut(s)	65, 165
Bsh1236I	CGCG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	27
BslFI	GGGAC	2 cut(s)	81, 176
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	225
BsmFI	GGGAC	2 cut(s)	81, 176
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	95, 235
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	124, 164
BspPI	GGATC	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	127
Bst6I	CTCTTC	2 cut(s)	41, 173
BstDEI	CTNAG	2 cut(s)	82, 222
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstFNI	CGCG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	85
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	65, 165
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	83
CviJI	RGCY	5 cut(s)	78, 150, 212, 226, 232
CviKI_1	RGCY	5 cut(s)	78, 150, 212, 226, 232
DdeI	CTNAG	2 cut(s)	82, 222
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
DraI	TTTAAA	1 cut(s)	282
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
Eam1104I	CTCTTC	2 cut(s)	41, 173
EarI	CTCTTC	2 cut(s)	41, 173
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaqI	GGGAC	2 cut(s)	81, 176
Fnu4HI	GCNGC	2 cut(s)	79, 179
Fsp4HI	GCNGC	2 cut(s)	79, 179
GluI	GCNGC	2 cut(s)	79, 179
HgaI	GACGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	218, 265
HphI	GGTGA	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	85, 133
Hpy188III	TCNNGA	2 cut(s)	202, 236
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	202
HpyCH4V	TGCA	1 cut(s)	181
HpyF3I	CTNAG	2 cut(s)	82, 222
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	5 cut(s)	27, 104, 112, 139, 145
Lsp1109I	GCAGC	2 cut(s)	65, 165
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	4 cut(s)	28, 160, 217, 251
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	6 cut(s)	44, 73, 109, 126, 161, 176
MseI	TTAA	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	127
MvnI	CGCG	1 cut(s)	94
NdeII	GATC	1 cut(s)	85
NlaIV	GGNNCC	2 cut(s)	124, 164
NmuCI	GTSAC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	80, 180
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	2 cut(s)	124, 164
PspPI	GGNCC	1 cut(s)	163
PspPPI	RGGWCCY	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	2 cut(s)	79, 179
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	7 cut(s)	45, 72, 118, 168, 228, 234, 255
SinI	GGWCC	1 cut(s)	163
SsiI	CCGC	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	66
TaqI	TCGA	4 cut(s)	195, 237, 258, 272
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	2 cut(s)	78, 178
Tsp45I	GTSAC	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	163
XagI	CCTNNNNNAGG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.