Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014863

Physical Location & Seq

Genomic Coordinates Forward (+)

25653211 .. 25653588

Gene Structure 378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG248200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCGTCATTCCCCGTCGTCAAGCACATCGTCCTCTTCAAGGTCAAAGACAACACCAATCCCTCCAAGGTCAACGGCTGCTCAGATCCGCCGCGTCCCTCCATCGTTTTGTCGCATCTGGGTTCCGGGTCGGATAAAGAGAATCTCAGCCTCTTTATCTGGGACCTCTTCACTCGGCTGAAAATCGGCTGCATCGAGTTCAAGAAGAAGGCTTTGGAGTCTCAGCTTCATCTCTCAAAGACGACGACAAGGCCGCCTGCTCGACAAGGTCGTCGATGGGATTCAATCGGCAACTTTAAAATGAATCCCTCGCTGTCTTCTTCTCCATCTTCTACTTCTTCAACTTTCGCCTGCTCTTGGTTTTTCGGTGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

125

Amino Acids

13.9

Weight (kDa)

10.03

Isoelectric Point (pI)

55.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014863)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0211441
rosa_laevigata	RLG00000020728
rosa_multiflora	Rmu_sc0002709.1_g000026 Rmu_sc0004199.1_g000043 Rmu_sc0006986.1_g000001 Rmu_sc0028901.1_g000002
rosa_samantha	Rh1AG349000 Rh1AG369300 Rh1BG138000 Rh2BG344400 Rh3CG285500 Rh3DG281100 Rh4BG126100 Rh6CG232400 Rh7AG458300 Rh7DG248200 Rh7DG263600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	270
AccII	CGCG	1 cut(s)	94
AciI	CCGC	3 cut(s)	89, 92, 254
AclWI	GGATC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	40, 357
AgsI	TTSAA	4 cut(s)	40, 202, 285, 342
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	2 cut(s)	78, 189
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	65, 176
BccI	CCATC	3 cut(s)	110, 270, 334
BceAI	ACGGC	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	225
BisI	GCNGC	4 cut(s)	79, 92, 190, 254
BlsI	GCNGC	4 cut(s)	80, 93, 191, 255
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	124, 164
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	2 cut(s)	124, 201
BpiI	GAAGAC	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 357
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	40, 357
BseMII	CTCAG	3 cut(s)	96, 160, 236
BseXI	GCAGC	2 cut(s)	65, 176
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	2 cut(s)	81, 176
BslI	CCNNNNNNNGG	2 cut(s)	40, 357
BsmAI	GTCTC	1 cut(s)	225
BsmFI	GGGAC	2 cut(s)	81, 176
BsnI	GGCC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	3 cut(s)	89, 92, 254
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	3 cut(s)	95, 159, 235
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	124, 164
BspPI	GGATC	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	66
Bst6I	CTCTTC	2 cut(s)	41, 173
BstC8I	GCNNGC	2 cut(s)	258, 352
BstDEI	CTNAG	3 cut(s)	82, 146, 222
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstFNI	CGCG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	125
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	65, 176
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	258, 352
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	83
CviJI	RGCY	7 cut(s)	78, 150, 178, 189, 212, 226, 253
CviKI_1	RGCY	7 cut(s)	78, 150, 178, 189, 212, 226, 253
DdeI	CTNAG	3 cut(s)	82, 146, 222
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
DraI	TTTAAA	1 cut(s)	298
DrdI	GACNNNNNNGTC	1 cut(s)	270
DseDI	GACNNNNNNGTC	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	41, 173
EarI	CTCTTC	2 cut(s)	41, 173
EciI	GGCGGA	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	163
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaqI	GGGAC	2 cut(s)	81, 176
Fnu4HI	GCNGC	4 cut(s)	79, 92, 190, 254
Fsp4HI	GCNGC	4 cut(s)	79, 92, 190, 254
GluI	GCNGC	4 cut(s)	79, 92, 190, 254
HaeIII	GGCC	1 cut(s)	253
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	4 cut(s)	142, 218, 281, 304
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	85, 133
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	3 cut(s)	20, 247, 276
HpyAV	CCTTC	1 cut(s)	202
HpyCH4V	TGCA	1 cut(s)	192
HpyF3I	CTNAG	3 cut(s)	82, 146, 222
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	5 cut(s)	104, 139, 145, 270, 364
Lsp1109I	GCAGC	2 cut(s)	65, 176
LweI	GCATC	2 cut(s)	124, 201
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	7 cut(s)	28, 160, 217, 309, 312, 321, 330
MflI	RGATCY	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	6 cut(s)	44, 73, 109, 161, 176, 319
MseI	TTAA	1 cut(s)	297
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	127
MvnI	CGCG	1 cut(s)	94
NciI	CCSGG	1 cut(s)	127
NdeII	GATC	1 cut(s)	85
NlaIV	GGNNCC	2 cut(s)	124, 164
NmeAIII	GCCGAG	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 268
PfeI	GAWTC	3 cut(s)	142, 281, 304
PflFI	GACNNNGTC	1 cut(s)	267
PkrI	GCNGC	4 cut(s)	80, 93, 191, 255
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	124, 164
PspPI	GGNCC	1 cut(s)	163
PspPPI	RGGWCCY	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	85
PsyI	GACNNNGTC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	4 cut(s)	79, 92, 190, 254
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	127
SetI	ASST	5 cut(s)	45, 72, 168, 228, 271
SfaNI	GCATC	2 cut(s)	124, 201
SinI	GGWCC	1 cut(s)	163
SsiI	CCGC	3 cut(s)	89, 92, 254
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	66
TaqI	TCGA	3 cut(s)	195, 262, 274
TauI	GCSGC	2 cut(s)	94, 256
TfiI	GAWTC	3 cut(s)	142, 281, 304
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseI	GCWGC	2 cut(s)	78, 189
TspDTI	ATGAA	2 cut(s)	218, 317
Tth111I	GACNNNGTC	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	163
XagI	CCTNNNNNAGG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.