Rh1AG369300

Armadillo/beta-catenin-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014863
Physical Location & Seq
Reverse (-)
60325744 .. 60326043
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG369300.1

Sequence Viewer

Length: 300 bp
ATGTCATCATTCCTCGTCGTCAAGCACATCGTCCTCTTCAAGGTCAAAGACAACACCAATCCCTCCAAAGTCAACGGCTGCTCAGATCCGTCACGTCCCTCCATCGTTTTGTCGCATCTGGGTTCCGGGTTGGATAAAGAGAATCTCAGCCTCTTTATCTTGGACCTCTTCACTCGGCTGAAAATCGGCTACATCGAGTTCAAGAAGAAGGCTTTGGAGTCTCAGCTTCAGCTTCTAGAAGACGACGACAAAGCCGCCTGCTCGACAATGTCGTCGATGGGATTCAATCGACAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

99

Amino Acids

11.05

Weight (kDa)

8.62

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 271
AciI CCGC 1 cut(s) 255
AclWI GGATC 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 3 cut(s) 40, 202, 286
AjiI CACGTC 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 2 cut(s) 226, 232
AluI AGCT 2 cut(s) 226, 232
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 1 cut(s) 127
AvaII GGWCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 65
BccI CCATC 2 cut(s) 110, 271
BceAI ACGGC 1 cut(s) 91
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 236
BisI GCNGC 2 cut(s) 79, 255
BlsI GCNGC 2 cut(s) 80, 256
Bme1390I CCNGG 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 163
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMII CTCAG 3 cut(s) 96, 160, 236
BseXI GCAGC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 81
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 1 cut(s) 255
BspCNI CTCAG 3 cut(s) 95, 159, 235
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 1 cut(s) 80
BssMI GATC 1 cut(s) 85
Bst6I CTCTTC 2 cut(s) 41, 173
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 3 cut(s) 82, 146, 222
BstENI CCTNNNNNAGG 1 cut(s) 38
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BtrI CACGTC 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 163
CviJI RGCY 8 cut(s) 78, 150, 178, 189, 212, 226, 232, 254
CviKI_1 RGCY 8 cut(s) 78, 150, 178, 189, 212, 226, 232, 254
DdeI CTNAG 3 cut(s) 82, 146, 222
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
DrdI GACNNNNNNGTC 1 cut(s) 271
DseDI GACNNNNNNGTC 1 cut(s) 271
Eam1104I CTCTTC 2 cut(s) 41, 173
EarI CTCTTC 2 cut(s) 41, 173
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 38
FaqI GGGAC 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 79, 255
Fsp4HI GCNGC 2 cut(s) 79, 255
FspBI CTAG 1 cut(s) 236
GluI GCNGC 2 cut(s) 79, 255
HapII CCGG 1 cut(s) 126
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 3 cut(s) 142, 218, 282
HpaII CCGG 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 2 cut(s) 202, 236
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 3 cut(s) 20, 248, 277
HpyAV CCTTC 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 94
HpyF3I CTNAG 3 cut(s) 82, 146, 222
HpySE526I ACGT 1 cut(s) 94
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 3 cut(s) 104, 139, 271
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 236
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 90
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 4 cut(s) 28, 160, 217, 251
MflI RGATCY 1 cut(s) 85
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 6 cut(s) 23, 44, 73, 109, 161, 176
MseI TTAA 1 cut(s) 298
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 127
NciI CCSGG 1 cut(s) 127
NdeII GATC 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 124
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 90
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 269
PfeI GAWTC 2 cut(s) 142, 282
PflFI GACNNNGTC 1 cut(s) 268
PkrI GCNGC 2 cut(s) 80, 256
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 85
PsyI GACNNNGTC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 298
SatI GCNGC 2 cut(s) 79, 255
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 127
SetI ASST 5 cut(s) 45, 97, 168, 228, 234
SfaNI GCATC 1 cut(s) 124
SinI GGWCC 1 cut(s) 163
SsiI CCGC 1 cut(s) 255
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 125
TaiI ACGT 1 cut(s) 97
TaqI TCGA 4 cut(s) 195, 263, 275, 289
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 2 cut(s) 142, 282
Tru1I TTAA 1 cut(s) 298
Tru9I TTAA 1 cut(s) 298
TseFI GTSAC 1 cut(s) 90
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 90
TspGWI ACGGA 1 cut(s) 78
Tth111I GACNNNGTC 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 163
XagI CCTNNNNNAGG 1 cut(s) 38
XbaI TCTAGA 1 cut(s) 235
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.