Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004199.1

Orthogroup ID

OG0014863

Physical Location & Seq

Genomic Coordinates Forward (+)

252128 .. 252400

Gene Structure 273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004199.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atgtcgtcattcgtcgtcgttgagcacatcgtcctcttcaaggtcaacggctgctcagatccgccgcgtccctccatcgttttgtcgcatctggattcagggtcggataaagagattctcagcctctttattcgagaactcttcactcggctgcaaatcgacgacatcgagttcaagaagaaggctttggagtctcagcttcagcttctcgaagacgacaacaaggccacctgcttgacaaggtcgtcgatgggattcaatcggagactttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

90

Amino Acids

10.27

Weight (kDa)

6.07

Isoelectric Point (pI)

60.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014863)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0211441
rosa_laevigata	RLG00000020728
rosa_multiflora	Rmu_sc0002709.1_g000026 Rmu_sc0004199.1_g000043 Rmu_sc0006986.1_g000001 Rmu_sc0028901.1_g000002
rosa_samantha	Rh1AG349000 Rh1AG369300 Rh1BG138000 Rh2BG344400 Rh3CG285500 Rh3DG281100 Rh4BG126100 Rh6CG232400 Rh7AG458300 Rh7DG248200 Rh7DG263600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	239
AasI	GACNNNNNNGTC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	239
AccII	CGCG	1 cut(s)	67
AciI	CCGC	2 cut(s)	62, 65
AclWI	GGATC	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	3 cut(s)	40, 175, 259
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	2 cut(s)	199, 205
AluI	AGCT	2 cut(s)	199, 205
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	2 cut(s)	198, 259
AlwI	GGATC	1 cut(s)	53
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	2 cut(s)	51, 151
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	38, 138
BccI	CCATC	2 cut(s)	83, 244
BceAI	ACGGC	1 cut(s)	64
BcoDI	GTCTC	2 cut(s)	198, 259
BfuAI	ACCTGC	1 cut(s)	239
BisI	GCNGC	3 cut(s)	52, 65, 152
BlsI	GCNGC	3 cut(s)	53, 66, 153
BmsI	GCATC	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	3 cut(s)	69, 133, 209
BseXI	GCAGC	2 cut(s)	38, 138
Bsh1236I	CGCG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	2 cut(s)	198, 259
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	2 cut(s)	62, 65
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	3 cut(s)	68, 132, 208
BspFNI	CGCG	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	53
BssMI	GATC	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	41, 146
BstDEI	CTNAG	3 cut(s)	55, 119, 195
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstFNI	CGCG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	2 cut(s)	198, 259
BstMBI	GATC	1 cut(s)	58
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	2 cut(s)	38, 138
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	227
BveI	ACCTGC	1 cut(s)	239
CseI	GACGC	1 cut(s)	56
CviJI	RGCY	7 cut(s)	51, 123, 151, 185, 199, 205, 227
CviKI_1	RGCY	7 cut(s)	51, 123, 151, 185, 199, 205, 227
DdeI	CTNAG	3 cut(s)	55, 119, 195
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
DrdI	GACNNNNNNGTC	1 cut(s)	244
DseDI	GACNNNNNNGTC	1 cut(s)	244
Eam1104I	CTCTTC	2 cut(s)	41, 146
EarI	CTCTTC	2 cut(s)	41, 146
EciI	GGCGGA	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	185
EcoNI	CCTNNNNNAGG	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	54
Fnu4HI	GCNGC	3 cut(s)	52, 65, 152
Fsp4HI	GCNGC	3 cut(s)	52, 65, 152
GluI	GCNGC	3 cut(s)	52, 65, 152
HaeIII	GGCC	1 cut(s)	227
HgaI	GACGC	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	4 cut(s)	95, 115, 191, 255
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	3 cut(s)	58, 106, 264
Hpy188III	TCNNGA	4 cut(s)	92, 134, 175, 209
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	4 cut(s)	17, 20, 164, 250
HpyAV	CCTTC	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	154
HpyF3I	CTNAG	3 cut(s)	55, 119, 195
Kzo9I	GATC	1 cut(s)	58
LpnPI	CCDG	3 cut(s)	77, 84, 244
Lsp1109I	GCAGC	2 cut(s)	38, 138
LweI	GCATC	1 cut(s)	97
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	4 cut(s)	28, 133, 190, 224
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	3 cut(s)	44, 82, 134
MseI	TTAA	1 cut(s)	271
MvnI	CGCG	1 cut(s)	67
NdeII	GATC	1 cut(s)	58
NmeAIII	GCCGAG	1 cut(s)	127
PaqCI	CACCTGC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PfeI	GAWTC	3 cut(s)	95, 115, 255
PflFI	GACNNNGTC	1 cut(s)	241
PkrI	GCNGC	3 cut(s)	53, 66, 153
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	58
PsyI	GACNNNGTC	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	271
SatI	GCNGC	3 cut(s)	52, 65, 152
Sau3AI	GATC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	5 cut(s)	45, 201, 207, 233, 245
SfaNI	GCATC	1 cut(s)	97
SsiI	CCGC	2 cut(s)	62, 65
TaqI	TCGA	5 cut(s)	133, 159, 168, 210, 248
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	3 cut(s)	95, 115, 255
Tru1I	TTAA	1 cut(s)	271
Tru9I	TTAA	1 cut(s)	271
TseI	GCWGC	2 cut(s)	51, 151
Tth111I	GACNNNGTC	1 cut(s)	241
XagI	CCTNNNNNAGG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.