Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0014863

Physical Location & Seq

Genomic Coordinates Forward (+)

58571497 .. 58571784

Gene Structure 288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG349000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCGTCATTCCCCGTCGTTGAGCACATCGTTCTCTTGAAGGTAAAAGACAACACCAATCCCTCCAAGGTCAACGACTGCTCAGATCCGCTGCGTCCCTCCATCGTTTTGTCTCCTCTGGGTTCCGGGTCGGATAAAGAGAATCTCAGCCTCTTTATCCGGGACCTCTTCACTCGGCTGCAAATCGGCGGCATCGAGTTCAAGAAGAAGGCTTTGGAGTCTCAGCTTCAGATTCTCAAAGACGACGACAAGGCCGTCGATGGGATTCAATTGGCAACTTTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

95

Amino Acids

10.48

Weight (kDa)

6.55

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014863)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0211441
rosa_laevigata	RLG00000020728
rosa_multiflora	Rmu_sc0002709.1_g000026 Rmu_sc0004199.1_g000043 Rmu_sc0006986.1_g000001 Rmu_sc0028901.1_g000002
rosa_samantha	Rh1AG349000 Rh1AG369300 Rh1BG138000 Rh2BG344400 Rh3CG285500 Rh3DG281100 Rh4BG126100 Rh6CG232400 Rh7AG458300 Rh7DG248200 Rh7DG263600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AciI	CCGC	2 cut(s)	89, 189
AclWI	GGATC	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgsI	TTSAA	3 cut(s)	40, 202, 269
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	2 cut(s)	117, 225
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	91, 178
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	2 cut(s)	127, 161
AvaII	GGWCC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	78, 165
BccI	CCATC	2 cut(s)	110, 254
BceAI	ACGGC	1 cut(s)	239
BcnI	CCSGG	2 cut(s)	127, 161
BcoDI	GTCTC	2 cut(s)	117, 225
BisI	GCNGC	3 cut(s)	92, 179, 190
BlsI	GCNGC	3 cut(s)	93, 180, 191
Bme1390I	CCNGG	2 cut(s)	127, 161
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	124, 164
BmrFI	CCNGG	2 cut(s)	127, 161
BmsI	GCATC	1 cut(s)	201
BpuMI	CCSGG	2 cut(s)	127, 161
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMII	CTCAG	3 cut(s)	96, 160, 236
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	78, 165
BshFI	GGCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	126, 160
BslFI	GGGAC	2 cut(s)	81, 176
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	2 cut(s)	117, 225
BsmFI	GGGAC	2 cut(s)	81, 176
BsnI	GGCC	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	2 cut(s)	89, 189
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	3 cut(s)	95, 159, 235
BspLI	GGNNCC	2 cut(s)	124, 164
BspPI	GGATC	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	173
BstDEI	CTNAG	3 cut(s)	82, 146, 222
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	2 cut(s)	117, 225
BstMBI	GATC	1 cut(s)	85
BstSCI	CCNGG	2 cut(s)	125, 159
BstV1I	GCAGC	2 cut(s)	78, 165
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	83
CviJI	RGCY	5 cut(s)	150, 178, 212, 226, 254
CviKI_1	RGCY	5 cut(s)	150, 178, 212, 226, 254
DdeI	CTNAG	3 cut(s)	82, 146, 222
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
DraI	TTTAAA	1 cut(s)	282
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaqI	GGGAC	2 cut(s)	81, 176
Fnu4HI	GCNGC	3 cut(s)	92, 179, 190
Fsp4HI	GCNGC	3 cut(s)	92, 179, 190
GluI	GCNGC	3 cut(s)	92, 179, 190
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	2 cut(s)	126, 160
HgaI	GACGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	4 cut(s)	142, 218, 232, 265
HpaII	CCGG	2 cut(s)	126, 160
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	85, 133, 231
Hpy188III	TCNNGA	2 cut(s)	37, 202
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	3 cut(s)	20, 248, 260
HpyAV	CCTTC	2 cut(s)	34, 202
HpyCH4V	TGCA	1 cut(s)	181
HpyF3I	CTNAG	3 cut(s)	82, 146, 222
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	3 cut(s)	104, 139, 173
Lsp1109I	GCAGC	2 cut(s)	78, 165
LweI	GCATC	1 cut(s)	201
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	2 cut(s)	160, 217
MfeI	CAATTG	1 cut(s)	269
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	5 cut(s)	73, 109, 126, 161, 176
MseI	TTAA	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	2 cut(s)	126, 160
MspR9I	CCNGG	2 cut(s)	127, 161
MunI	CAATTG	1 cut(s)	269
NciI	CCSGG	2 cut(s)	127, 161
NdeII	GATC	1 cut(s)	85
NlaIV	GGNNCC	2 cut(s)	124, 164
NmeAIII	GCCGAG	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 252
PfeI	GAWTC	3 cut(s)	142, 232, 265
PfoI	TCCNGGA	1 cut(s)	159
PkrI	GCNGC	3 cut(s)	93, 180, 191
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	124, 164
PspPI	GGNCC	1 cut(s)	163
PspPPI	RGGWCCY	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	3 cut(s)	92, 179, 190
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	127, 161
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	4 cut(s)	45, 72, 168, 228
SfaNI	GCATC	1 cut(s)	201
SinI	GGWCC	1 cut(s)	163
Sse9I	AATT	1 cut(s)	269
SsiI	CCGC	2 cut(s)	89, 189
StyD4I	CCNGG	2 cut(s)	125, 159
StyI	CCWWGG	1 cut(s)	66
TaqI	TCGA	2 cut(s)	195, 258
TasI	AATT	1 cut(s)	269
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	3 cut(s)	142, 232, 265
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseI	GCWGC	2 cut(s)	91, 178
VpaK11BI	GGWCC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.