RLG00000021160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018667
Physical Location & Seq
Forward (+)
72476142 .. 72478001
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021160

Sequence Viewer

Length: 594 bp
ATGGTGAGTACTATTGTCTTTATTCATAATCTTGCTATGGTATTCTGTTATTCGATTGTGAATTTTGAGGCCGAGGCTGTTGGATTTCGTTACGGCATTGGACGAATCGGTGGTGAAGTGGAGACAGTAATAGCTGTTTCTTGCATCTTTGGTTTTTGGGTTCGCTTCTGGAATTTGGAACCTCAAGTGCAGAAGGCCTCGGGGTGCAAGACACATGGCGAGGCTGGCGCAGTTGCTTACGAATTCGTAGACCAAGAAGACGTTGTCGCCGGAGATGGAGGCGCCGAAGAGCTTGACGATGGAGGTGTGGTGGCTGCGGCAGAGCATGGAGAGCCGGTTCTTGAGTTCTTGGGTTTCGAGCCTATGGCGGAACTTGCTTTGGAAGACGACAGCGTCTCTGCCGCGGAGGGTGCAGCGCCAGGAGGGGGTGAAGGAGGAGAAGCTGAAGCGCTTAGCGAGGAAGTTGTTGATGGCGGCGCAGATTTTGGAGAGTTCGTAGAGGTTAGGGTTTTCGGGGAGGGAGAGGTGGAAGCTGGCGAGGGAGGTTTGGCTGGAGGTGGAGGCGGTGGAGGAGAGCGTGTAGCTTGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

20.13

Weight (kDa)

4.05

Isoelectric Point (pI)

25.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018667)

Species Orthologous Gene IDs
rosa_laevigata RLG00000021160 RLG00000027272
rosa_multiflora Rmu_sc0001694.1_g000011 Rmu_sc0012684.1_g000003
rosa_rugosa Rorug01G0091500 Rorug06G0032100
rosa_samantha Rh5AG416100 Rh5DG340000 Rh7AG456400
rosa_wichuraiana Rw2G017880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 392
AccB1I GGYRCC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 249
AccII CGCG 1 cut(s) 404
AciI CCGC 6 cut(s) 317, 368, 402, 404, 474, 564
AcsI RAATTY 3 cut(s) 61, 172, 242
AcuI CTGAAG 1 cut(s) 465
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 1 cut(s) 10
AfeI AGCGCT 1 cut(s) 450
AfiI CCNNNNNNNGG 1 cut(s) 425
AjnI CCWGG 1 cut(s) 418
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
AluBI AGCT 5 cut(s) 134, 292, 443, 533, 584
AluI AGCT 5 cut(s) 134, 292, 443, 533, 584
Alw26I GTCTC 2 cut(s) 116, 400
Ama87I CYCGRG 1 cut(s) 199
Aor51HI AGCGCT 1 cut(s) 450
AoxI GGCC 2 cut(s) 69, 195
ApeKI GCWGC 2 cut(s) 314, 413
ApoI RAATTY 3 cut(s) 61, 172, 242
AspLEI GCGC 5 cut(s) 230, 284, 418, 451, 479
AsuHPI GGTGA 3 cut(s) 16, 125, 440
AvaI CYCGRG 1 cut(s) 199
BanI GGYRCC 1 cut(s) 281
BbsI GAAGAC 2 cut(s) 264, 390
BbvI GCAGC 2 cut(s) 301, 425
BccI CCATC 3 cut(s) 269, 293, 464
BceAI ACGGC 1 cut(s) 109
BciT130I CCWGG 1 cut(s) 420
BcoDI GTCTC 2 cut(s) 116, 400
BfoI RGCGCY 3 cut(s) 285, 419, 452
BisI GCNGC 5 cut(s) 315, 318, 402, 414, 475
BlpI GCTNAGC 1 cut(s) 452
BlsI GCNGC 5 cut(s) 316, 319, 403, 415, 476
BmcAI AGTACT 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 420
BmeT110I CYCGRG 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 180, 283
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 153
BpiI GAAGAC 2 cut(s) 264, 390
BpmI CTGGAG 1 cut(s) 573
Bpu1102I GCTNAGC 1 cut(s) 452
BpuEI CTTGAG 2 cut(s) 168, 362
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 72, 198, 402
BsaXI ACNNNNNCTCC 8 cut(s) 294, 321, 324, 351, 480, 510, 564, 594
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse118I RCCGGY 1 cut(s) 334
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 3 cut(s) 72, 198, 402
BseLI CCNNNNNNNGG 1 cut(s) 425
BseRI GAGGAG 2 cut(s) 450, 585
BseXI GCAGC 2 cut(s) 301, 425
BsgI GTGCAG 2 cut(s) 209, 432
Bsh1236I CGCG 1 cut(s) 404
BshFI GGCC 2 cut(s) 71, 197
BshNI GGYRCC 1 cut(s) 281
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 2 cut(s) 270, 335
BslI CCNNNNNNNGG 1 cut(s) 425
BsmAI GTCTC 2 cut(s) 116, 400
BsmBI CGTCTC 1 cut(s) 400
BsnI GGCC 2 cut(s) 71, 197
BsoBI CYCGRG 1 cut(s) 199
Bsp1720I GCTNAGC 1 cut(s) 452
BspACI CCGC 6 cut(s) 317, 368, 402, 404, 474, 564
BspANI GGCC 2 cut(s) 71, 197
BspFNI CGCG 1 cut(s) 404
BspLI GGNNCC 2 cut(s) 180, 283
BspQI GCTCTTC 1 cut(s) 282
BspT107I GGYRCC 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 334
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 3 cut(s) 72, 198, 402
BssNI GRCGYC 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 282
BstC8I GCNNGC 2 cut(s) 226, 535
BstDEI CTNAG 1 cut(s) 452
BstDSI CCRYGG 1 cut(s) 402
BstFNI CGCG 1 cut(s) 404
BstH2I RGCGCY 3 cut(s) 285, 419, 452
BstHHI GCGC 5 cut(s) 230, 284, 418, 451, 479
BstMAI GTCTC 2 cut(s) 116, 400
BstMWI GCNNNNNNNGC 4 cut(s) 225, 331, 374, 410
BstNI CCWGG 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 418
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 2 cut(s) 301, 425
BstV2I GAAGAC 2 cut(s) 264, 390
BsuRI GGCC 2 cut(s) 71, 197
BtgI CCRYGG 1 cut(s) 402
Cac8I GCNNGC 2 cut(s) 226, 535
CfoI GCGC 5 cut(s) 230, 284, 418, 451, 479
Cfr10I RCCGGY 1 cut(s) 334
Cfr42I CCGCGG 1 cut(s) 405
CseI GACGC 1 cut(s) 382
Csp6I GTAC 1 cut(s) 9
CviAII CATG 2 cut(s) 215, 326
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 452
DinI GGCGCC 1 cut(s) 283
DrdI GACNNNNNNGTC 1 cut(s) 392
DseDI GACNNNNNNGTC 1 cut(s) 392
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
EciI GGCGGA 1 cut(s) 383
Eco147I AGGCCT 1 cut(s) 197
Eco47III AGCGCT 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 465
Eco88I CYCGRG 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 418
EgeI GGCGCC 1 cut(s) 283
EheI GGCGCC 1 cut(s) 283
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 2 cut(s) 218, 329
FaiI YATR 5 cut(s) 27, 38, 216, 327, 365
FatI CATG 2 cut(s) 214, 325
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 5 cut(s) 315, 318, 402, 414, 475
Fsp4HI GCNGC 5 cut(s) 315, 318, 402, 414, 475
GlaI GCGC 5 cut(s) 229, 283, 417, 450, 478
GluI GCNGC 5 cut(s) 315, 318, 402, 414, 475
GsuI CTGGAG 1 cut(s) 573
HaeII RGCGCY 3 cut(s) 285, 419, 452
HaeIII GGCC 2 cut(s) 71, 197
HapII CCGG 2 cut(s) 270, 335
HgaI GACGC 1 cut(s) 382
HhaI GCGC 5 cut(s) 230, 284, 418, 451, 479
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 2 cut(s) 218, 329
Hin6I GCGC 5 cut(s) 228, 282, 416, 449, 477
HinP1I GCGC 5 cut(s) 228, 282, 416, 449, 477
HinfI GANTC 1 cut(s) 105
HpaII CCGG 2 cut(s) 270, 335
HphI GGTGA 3 cut(s) 16, 125, 440
Hpy166II GTNNAC 1 cut(s) 250
Hpy188III TCNNGA 2 cut(s) 169, 341
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 187, 425
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 4 cut(s) 144, 190, 207, 413
HpyF10VI GCNNNNNNNGC 4 cut(s) 225, 331, 374, 410
HpyF3I CTNAG 1 cut(s) 452
HpySE526I ACGT 1 cut(s) 261
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 2 cut(s) 218, 329
HspAI GCGC 5 cut(s) 228, 282, 416, 449, 477
KasI GGCGCC 1 cut(s) 281
KspI CCGCGG 1 cut(s) 405
LguI GCTCTTC 1 cut(s) 282
LpnPI CCDG 8 cut(s) 154, 210, 283, 348, 405, 432, 519, 537
Lsp1109I GCAGC 2 cut(s) 301, 425
LweI GCATC 1 cut(s) 153
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 89
MboII GAAGA 3 cut(s) 269, 299, 395
MluCI AATT 3 cut(s) 61, 172, 242
Mly113I GGCGCC 1 cut(s) 282
MmeI TCCRAC 1 cut(s) 61
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 2 cut(s) 270, 335
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 4 cut(s) 225, 331, 374, 410
NarI GGCGCC 1 cut(s) 282
NlaIII CATG 2 cut(s) 218, 329
NlaIV GGNNCC 2 cut(s) 180, 283
NmeAIII GCCGAG 1 cut(s) 97
PceI AGGCCT 1 cut(s) 197
PciSI GCTCTTC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 105
PflFI GACNNNGTC 2 cut(s) 263, 392
PkrI GCNGC 5 cut(s) 316, 319, 403, 415, 476
PluTI GGCGCC 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 2 cut(s) 180, 283
PsyI GACNNNGTC 2 cut(s) 263, 392
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SacII CCGCGG 1 cut(s) 405
SapI GCTCTTC 1 cut(s) 282
SatI GCNGC 5 cut(s) 315, 318, 402, 414, 475
ScaI AGTACT 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 420
SfaNI GCATC 1 cut(s) 153
SfoI GGCGCC 1 cut(s) 283
Sfr303I CCGCGG 1 cut(s) 405
SgrBI CCGCGG 1 cut(s) 405
SmlI CTYRAG 2 cut(s) 183, 341
SmoI CTYRAG 2 cut(s) 183, 341
Sse9I AATT 3 cut(s) 61, 172, 242
SseBI AGGCCT 1 cut(s) 197
SsiI CCGC 6 cut(s) 317, 368, 402, 404, 474, 564
SspDI GGCGCC 1 cut(s) 281
StuI AGGCCT 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 264
TaqI TCGA 2 cut(s) 53, 357
TasI AATT 3 cut(s) 61, 172, 242
TatI WGTACW 1 cut(s) 8
TauI GCSGC 3 cut(s) 320, 404, 477
TfiI GAWTC 1 cut(s) 105
TseI GCWGC 2 cut(s) 314, 413
TspDTI ATGAA 1 cut(s) 14
Tth111I GACNNNGTC 2 cut(s) 263, 392
XapI RAATTY 3 cut(s) 61, 172, 242
XmiI GTMKAC 1 cut(s) 249
ZrmI AGTACT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.