Rw2G017880

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018667
Physical Location & Seq
Forward (+)
22468840 .. 22474816
5977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G017880.1

Sequence Viewer

Length: 585 bp
ATGGGTGGCATTGGGTTGGTAATACGTGATTCTAGTGGGCATTTTGTGGCTGGTCATGCTACCCCTTTCACACATATACGGTCTCCAGAGCAGGTTGAGCTTATGGCAGTCCTTCTAGCTATCCGTTTTGTCCTTGATCATGGGCTTCAACCTATGGTCTTTGAATCAGACTCATTGCAAGTTGTCAAAGCGTGCAATTCGACAAGCGGCGAGGCTGGCGCAGTTGCTTACGAATTCGTAGACCAAGAAGACGTTGTCGTCGGAGATGGAGGCGCCGAAGAGCTTGACGATGGAGGTGTGGTGGCTGCGGCAGAGCATGGAGAGCCGGTTCTCGAGTTCTTGGGTTTCGAGCCTGTGGCGGAACTTTCTCTGGAAGACGACAGCGTCTCTGCCGCGGAGGGTGCAGCGCCAGGAGAGGGTGAAGGAGGAGGAGCTGAAGCACTTGGCGAGGAAGTTGTTGGTGGCGGCGCAGATTTCGGAGAGGTCGTAGAGGTTAGGGTTTTCAGGGAGGGAGAGGTGGAAGCTGGCGAGGGAGGTTTGGTTGGAGGTGGAGGCGGTGGAGGAGAGCTTGTAGCTTGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

194

Amino Acids

19.44

Weight (kDa)

4.05

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 69 1.3e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018667)

Species Orthologous Gene IDs
rosa_laevigata RLG00000021160 RLG00000027272
rosa_multiflora Rmu_sc0001694.1_g000011 Rmu_sc0012684.1_g000003
rosa_rugosa Rorug01G0091500 Rorug06G0032100
rosa_samantha Rh5AG416100 Rh5DG340000 Rh7AG456400
rosa_wichuraiana Rw2G017880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 257, 383
Acc36I ACCTGC 1 cut(s) 82
AccB1I GGYRCC 1 cut(s) 272
AccI GTMKAC 1 cut(s) 240
AccII CGCG 1 cut(s) 395
AciI CCGC 7 cut(s) 207, 308, 359, 393, 395, 465, 555
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 456
AcyI GRCGYC 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 2 cut(s) 149, 164
AjnI CCWGG 1 cut(s) 409
AloI GAACNNNNNNTCC 2 cut(s) 312, 344
AluBI AGCT 7 cut(s) 100, 119, 283, 434, 524, 568, 575
AluI AGCT 7 cut(s) 100, 119, 283, 434, 524, 568, 575
Alw26I GTCTC 2 cut(s) 87, 391
Ama87I CYCGRG 1 cut(s) 332
ApeKI GCWGC 2 cut(s) 305, 404
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 4 cut(s) 221, 275, 409, 470
AsuHPI GGTGA 1 cut(s) 431
AvaI CYCGRG 1 cut(s) 332
BanI GGYRCC 1 cut(s) 272
BbsI GAAGAC 2 cut(s) 255, 381
BbvI GCAGC 2 cut(s) 292, 416
BccI CCATC 2 cut(s) 260, 284
BciT130I CCWGG 1 cut(s) 411
BclI TGATCA 1 cut(s) 136
BcoDI GTCTC 2 cut(s) 87, 391
BfaI CTAG 2 cut(s) 33, 116
BfoI RGCGCY 2 cut(s) 276, 410
BfuAI ACCTGC 1 cut(s) 82
BisI GCNGC 6 cut(s) 208, 306, 309, 393, 405, 466
BlsI GCNGC 6 cut(s) 209, 307, 310, 394, 406, 467
Bme1390I CCNGG 1 cut(s) 411
BmeT110I CYCGRG 1 cut(s) 332
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 411
BpiI GAAGAC 2 cut(s) 255, 381
BpmI CTGGAG 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 393
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse118I RCCGGY 1 cut(s) 325
Bse3DI GCAATG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMI GCAATG 1 cut(s) 173
BseRI GAGGAG 3 cut(s) 441, 444, 576
BseXI GCAGC 2 cut(s) 292, 416
BsgI GTGCAG 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 395
BshNI GGYRCC 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 2 cut(s) 87, 391
BsmBI CGTCTC 1 cut(s) 391
Bso31I GGTCTC 1 cut(s) 87
BsoBI CYCGRG 1 cut(s) 332
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 7 cut(s) 207, 308, 359, 393, 395, 465, 555
BspFNI CGCG 1 cut(s) 395
BspLI GGNNCC 1 cut(s) 274
BspMI ACCTGC 1 cut(s) 82
BspQI GCTCTTC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 325
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 273
BstACI GRCGYC 1 cut(s) 273
BstBAI YACGTR 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 193, 217, 526
BstDSI CCRYGG 1 cut(s) 393
BstFNI CGCG 1 cut(s) 395
BstH2I RGCGCY 2 cut(s) 276, 410
BstHHI GCGC 4 cut(s) 221, 275, 409, 470
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 2 cut(s) 87, 391
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 5 cut(s) 56, 97, 216, 322, 401
BstNI CCWGG 1 cut(s) 411
BstSCI CCNGG 1 cut(s) 409
BstUI CGCG 1 cut(s) 395
BstV1I GCAGC 2 cut(s) 292, 416
BstV2I GAAGAC 2 cut(s) 255, 381
BtgI CCRYGG 1 cut(s) 393
BveI ACCTGC 1 cut(s) 82
Cac8I GCNNGC 3 cut(s) 193, 217, 526
CfoI GCGC 4 cut(s) 221, 275, 409, 470
Cfr10I RCCGGY 1 cut(s) 325
Cfr42I CCGCGG 1 cut(s) 396
CseI GACGC 1 cut(s) 373
CviAII CATG 3 cut(s) 56, 140, 317
DinI GGCGCC 1 cut(s) 274
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
DrdI GACNNNNNNGTC 2 cut(s) 257, 383
DseDI GACNNNNNNGTC 2 cut(s) 257, 383
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
EciI GGCGGA 1 cut(s) 374
Eco31I GGTCTC 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 409
EgeI GGCGCC 1 cut(s) 274
EheI GGCGCC 1 cut(s) 274
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 3 cut(s) 59, 143, 320
FaiI YATR 7 cut(s) 57, 75, 77, 104, 141, 155, 318
FatI CATG 3 cut(s) 55, 139, 316
FbaI TGATCA 1 cut(s) 136
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 6 cut(s) 208, 306, 309, 393, 405, 466
Fsp4HI GCNGC 6 cut(s) 208, 306, 309, 393, 405, 466
FspBI CTAG 2 cut(s) 33, 116
GlaI GCGC 4 cut(s) 220, 274, 408, 469
GluI GCNGC 6 cut(s) 208, 306, 309, 393, 405, 466
GsuI CTGGAG 1 cut(s) 69
HaeII RGCGCY 2 cut(s) 276, 410
HapII CCGG 1 cut(s) 326
HgaI GACGC 1 cut(s) 373
HhaI GCGC 4 cut(s) 221, 275, 409, 470
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 3 cut(s) 59, 143, 320
Hin6I GCGC 4 cut(s) 219, 273, 407, 468
HinP1I GCGC 4 cut(s) 219, 273, 407, 468
HinfI GANTC 3 cut(s) 29, 164, 170
HpaII CCGG 1 cut(s) 326
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 169, 263, 479
Hpy188III TCNNGA 3 cut(s) 86, 332, 371
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 2 cut(s) 122, 416
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4IV ACGT 2 cut(s) 25, 252
HpyCH4V TGCA 3 cut(s) 178, 195, 404
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 97, 216, 322, 401
HpySE526I ACGT 2 cut(s) 25, 252
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 3 cut(s) 59, 143, 320
HspAI GCGC 4 cut(s) 219, 273, 407, 468
KasI GGCGCC 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 136
KspI CCGCGG 1 cut(s) 396
Kzo9I GATC 1 cut(s) 136
LguI GCTCTTC 1 cut(s) 273
LmnI GCTCC 1 cut(s) 431
Lsp1109I GCAGC 2 cut(s) 292, 416
MaeI CTAG 2 cut(s) 33, 116
MaeII ACGT 2 cut(s) 25, 252
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 3 cut(s) 260, 290, 386
MluCI AATT 2 cut(s) 196, 233
Mly113I GGCGCC 1 cut(s) 273
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 2 cut(s) 241, 523
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 411
MvnI CGCG 1 cut(s) 395
MwoI GCNNNNNNNGC 5 cut(s) 56, 97, 216, 322, 401
NarI GGCGCC 1 cut(s) 273
NdeII GATC 1 cut(s) 136
NlaIII CATG 3 cut(s) 59, 143, 320
NlaIV GGNNCC 1 cut(s) 274
PaeR7I CTCGAG 1 cut(s) 332
PciSI GCTCTTC 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 483
PfeI GAWTC 2 cut(s) 29, 164
PflFI GACNNNGTC 2 cut(s) 254, 383
PkrI GCNGC 6 cut(s) 209, 307, 310, 394, 406, 467
PleI GAGTC 1 cut(s) 164
PluTI GGCGCC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 164
Ppu21I YACGTR 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 274
PsyI GACNNNGTC 2 cut(s) 254, 383
SacII CCGCGG 1 cut(s) 396
SapI GCTCTTC 1 cut(s) 273
SatI GCNGC 6 cut(s) 208, 306, 309, 393, 405, 466
Sau3AI GATC 1 cut(s) 136
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 411
SfoI GGCGCC 1 cut(s) 274
Sfr274I CTCGAG 1 cut(s) 332
Sfr303I CCGCGG 1 cut(s) 396
SgrBI CCGCGG 1 cut(s) 396
SlaI CTCGAG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 2 cut(s) 196, 233
SsiI CCGC 7 cut(s) 207, 308, 359, 393, 395, 465, 555
SspDI GGCGCC 1 cut(s) 272
SspMI CTAG 2 cut(s) 33, 116
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 81
TaiI ACGT 2 cut(s) 28, 255
TaqI TCGA 3 cut(s) 200, 333, 348
TasI AATT 2 cut(s) 196, 233
TauI GCSGC 4 cut(s) 210, 311, 395, 468
TfiI GAWTC 2 cut(s) 29, 164
TseI GCWGC 2 cut(s) 305, 404
TspGWI ACGGA 1 cut(s) 113
Tth111I GACNNNGTC 2 cut(s) 254, 383
XapI RAATTY 1 cut(s) 233
XhoI CTCGAG 1 cut(s) 332
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 2 cut(s) 33, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.