Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0018667

Physical Location & Seq

Genomic Coordinates Forward (+)

10177986 .. 10179039

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027272

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGATTGGTTTTGGCGCCTCTTCAAATGAAGAATTGAAGAAGAAGAAGAAGGAAAAGAGCAGCGAGGGAATAGCTGAAACGTCGACTACAATTACACACAGCGAGGCTGGCGCAGTTGCTTACGAATTCGTAGACCAAGAAGACGTTGTCGCCGGAGATGGAGGCGCCGAAGAGCTTGACGATGGAGGTGTGGTGGCTGCGGCAGAGCATGGAGAGCCGGTTCTTGAGTTCTTGGGTTTCGAGCCTATGGCGGAACTTGCTCTGGAAGACGACAGCGTCTCTGCCGCGAAGGGTGCAGCGCCAGGAGGGGGTGAAGGAGGAGGAGATGAAGCGCTTGGCGAGGAAGTTCTTGATGGCGGCGCAGATTTTGGAGAGGTCGTAGAGGTTAGGGTTTTCGGGGAGGGAGAGGTGGAAGCTGGCGAGGGAGGTTTGGCTGGAGGTGGAGGCGGTGGAGGAGAGCTTGTAGCTTGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

159

Amino Acids

15.52

Weight (kDa)

4.05

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018667)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000021160 RLG00000027272
rosa_multiflora	Rmu_sc0001694.1_g000011 Rmu_sc0012684.1_g000003
rosa_rugosa	Rorug01G0091500 Rorug06G0032100
rosa_samantha	Rh5AG416100 Rh5DG340000 Rh7AG456400
rosa_wichuraiana	Rw2G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AccB1I	GGYRCC	2 cut(s)	14, 164
AccI	GTMKAC	2 cut(s)	83, 132
AccII	CGCG	1 cut(s)	287
AciI	CCGC	5 cut(s)	200, 251, 285, 357, 447
AcsI	RAATTY	1 cut(s)	125
AcyI	GRCGYC	2 cut(s)	15, 165
AfeI	AGCGCT	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgsI	TTSAA	2 cut(s)	24, 37
AjnI	CCWGG	1 cut(s)	301
AloI	GAACNNNNNNTCC	2 cut(s)	204, 236
AluBI	AGCT	5 cut(s)	74, 175, 416, 460, 467
AluI	AGCT	5 cut(s)	74, 175, 416, 460, 467
Alw26I	GTCTC	1 cut(s)	283
Aor51HI	AGCGCT	1 cut(s)	333
ApeKI	GCWGC	3 cut(s)	60, 197, 296
ApoI	RAATTY	1 cut(s)	125
AspLEI	GCGC	6 cut(s)	17, 113, 167, 301, 334, 362
AsuHPI	GGTGA	1 cut(s)	323
BanI	GGYRCC	2 cut(s)	14, 164
BbsI	GAAGAC	2 cut(s)	147, 273
BbvI	GCAGC	3 cut(s)	72, 184, 308
BccI	CCATC	3 cut(s)	152, 176, 347
BciT130I	CCWGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	283
BfoI	RGCGCY	4 cut(s)	18, 168, 302, 335
BisI	GCNGC	6 cut(s)	61, 198, 201, 285, 297, 358
BlsI	GCNGC	6 cut(s)	62, 199, 202, 286, 298, 359
Bme1390I	CCNGG	1 cut(s)	303
BmiI	GGNNCC	2 cut(s)	16, 166
BmrFI	CCNGG	1 cut(s)	303
BpiI	GAAGAC	2 cut(s)	147, 273
BpmI	CTGGAG	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	245
BsaHI	GRCGYC	2 cut(s)	15, 165
BsaXI	ACNNNNNCTCC	8 cut(s)	177, 204, 207, 234, 363, 393, 447, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse118I	RCCGGY	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseRI	GAGGAG	3 cut(s)	333, 336, 468
BseXI	GCAGC	3 cut(s)	72, 184, 308
BsgI	GTGCAG	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	287
BshNI	GGYRCC	2 cut(s)	14, 164
BsiSI	CCGG	2 cut(s)	153, 218
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	283
BsmBI	CGTCTC	1 cut(s)	283
BspACI	CCGC	5 cut(s)	200, 251, 285, 357, 447
BspFNI	CGCG	1 cut(s)	287
BspLI	GGNNCC	2 cut(s)	16, 166
BspQI	GCTCTTC	1 cut(s)	165
BspT107I	GGYRCC	2 cut(s)	14, 164
BsrFI	RCCGGY	1 cut(s)	217
BssAI	RCCGGY	1 cut(s)	217
BssNI	GRCGYC	2 cut(s)	15, 165
Bst2UI	CCWGG	1 cut(s)	303
Bst6I	CTCTTC	2 cut(s)	25, 165
BstACI	GRCGYC	2 cut(s)	15, 165
BstC8I	GCNNGC	2 cut(s)	109, 418
BstFNI	CGCG	1 cut(s)	287
BstH2I	RGCGCY	4 cut(s)	18, 168, 302, 335
BstHHI	GCGC	6 cut(s)	17, 113, 167, 301, 334, 362
BstMAI	GTCTC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 214, 257, 293
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstUI	CGCG	1 cut(s)	287
BstV1I	GCAGC	3 cut(s)	72, 184, 308
BstV2I	GAAGAC	2 cut(s)	147, 273
Cac8I	GCNNGC	2 cut(s)	109, 418
CfoI	GCGC	6 cut(s)	17, 113, 167, 301, 334, 362
Cfr10I	RCCGGY	1 cut(s)	217
CseI	GACGC	1 cut(s)	265
CviAII	CATG	1 cut(s)	209
DinI	GGCGCC	2 cut(s)	16, 166
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
Eam1104I	CTCTTC	2 cut(s)	25, 165
EarI	CTCTTC	2 cut(s)	25, 165
EciI	GGCGGA	1 cut(s)	266
Eco47III	AGCGCT	1 cut(s)	333
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	301
EgeI	GGCGCC	2 cut(s)	16, 166
EheI	GGCGCC	2 cut(s)	16, 166
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	1 cut(s)	212
FaiI	YATR	2 cut(s)	210, 248
FatI	CATG	1 cut(s)	208
FblI	GTMKAC	2 cut(s)	83, 132
Fnu4HI	GCNGC	6 cut(s)	61, 198, 201, 285, 297, 358
Fsp4HI	GCNGC	6 cut(s)	61, 198, 201, 285, 297, 358
GlaI	GCGC	6 cut(s)	16, 112, 166, 300, 333, 361
GluI	GCNGC	6 cut(s)	61, 198, 201, 285, 297, 358
GsuI	CTGGAG	1 cut(s)	456
HaeII	RGCGCY	4 cut(s)	18, 168, 302, 335
HapII	CCGG	2 cut(s)	153, 218
HgaI	GACGC	1 cut(s)	265
HhaI	GCGC	6 cut(s)	17, 113, 167, 301, 334, 362
Hin1I	GRCGYC	2 cut(s)	15, 165
Hin1II	CATG	1 cut(s)	212
Hin6I	GCGC	6 cut(s)	15, 111, 165, 299, 332, 360
HinP1I	GCGC	6 cut(s)	15, 111, 165, 299, 332, 360
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HpaII	CCGG	2 cut(s)	153, 218
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	84, 133
Hpy188III	TCNNGA	3 cut(s)	224, 263, 350
Hpy8I	GTNNAC	2 cut(s)	84, 133
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	3 cut(s)	43, 283, 308
HpyCH4IV	ACGT	2 cut(s)	80, 144
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 214, 257, 293
HpySE526I	ACGT	2 cut(s)	80, 144
Hsp92I	GRCGYC	2 cut(s)	15, 165
Hsp92II	CATG	1 cut(s)	212
HspAI	GCGC	6 cut(s)	15, 111, 165, 299, 332, 360
KasI	GGCGCC	2 cut(s)	14, 164
LguI	GCTCTTC	1 cut(s)	165
LpnPI	CCDG	8 cut(s)	93, 166, 231, 248, 288, 315, 402, 420
Lsp1109I	GCAGC	3 cut(s)	72, 184, 308
MaeII	ACGT	2 cut(s)	80, 144
MboII	GAAGA	9 cut(s)	12, 41, 49, 52, 55, 58, 152, 182, 278
MluCI	AATT	3 cut(s)	32, 90, 125
Mly113I	GGCGCC	2 cut(s)	15, 165
MspI	CCGG	2 cut(s)	153, 218
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	287
MwoI	GCNNNNNNNGC	4 cut(s)	108, 214, 257, 293
NarI	GGCGCC	2 cut(s)	15, 165
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	2 cut(s)	16, 166
PciSI	GCTCTTC	1 cut(s)	165
PflFI	GACNNNGTC	2 cut(s)	146, 275
PkrI	GCNGC	6 cut(s)	62, 199, 202, 286, 298, 359
PluTI	GGCGCC	2 cut(s)	18, 168
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	16, 166
PsyI	GACNNNGTC	2 cut(s)	146, 275
SalI	GTCGAC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	165
SatI	GCNGC	6 cut(s)	61, 198, 201, 285, 297, 358
ScrFI	CCNGG	1 cut(s)	303
SfoI	GGCGCC	2 cut(s)	16, 166
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	3 cut(s)	32, 90, 125
SsiI	CCGC	5 cut(s)	200, 251, 285, 357, 447
SspDI	GGCGCC	2 cut(s)	14, 164
StyD4I	CCNGG	1 cut(s)	301
TaiI	ACGT	2 cut(s)	83, 147
TaqI	TCGA	2 cut(s)	83, 240
TasI	AATT	3 cut(s)	32, 90, 125
TauI	GCSGC	3 cut(s)	203, 287, 360
TseI	GCWGC	3 cut(s)	60, 197, 296
TspDTI	ATGAA	2 cut(s)	42, 342
Tth111I	GACNNNGTC	2 cut(s)	146, 275
XapI	RAATTY	1 cut(s)	125
XmiI	GTMKAC	2 cut(s)	83, 132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.