Ribonuclease H protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000021160 RLG00000027272 |
| rosa_multiflora | Rmu_sc0001694.1_g000011 Rmu_sc0012684.1_g000003 |
| rosa_rugosa | Rorug01G0091500 Rorug06G0032100 |
| rosa_samantha | Rh5AG416100 Rh5DG340000 Rh7AG456400 |
| rosa_wichuraiana | Rw2G017880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 3 cut(s) | 151, 314, 329 |
| AluBI | AGCT | 4 cut(s) | 9, 94, 265, 284 |
| AluI | AGCT | 4 cut(s) | 9, 94, 265, 284 |
| Alw26I | GTCTC | 3 cut(s) | 19, 252, 423 |
| ApeKI | GCWGC | 2 cut(s) | 91, 224 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 146 |
| AxyI | CCTNAGG | 1 cut(s) | 123 |
| BbvI | GCAGC | 2 cut(s) | 103, 211 |
| BccI | CCATC | 1 cut(s) | 160 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 80, 114 |
| BclI | TGATCA | 1 cut(s) | 301 |
| BcoDI | GTCTC | 3 cut(s) | 19, 252, 423 |
| BfaI | CTAG | 3 cut(s) | 95, 198, 281 |
| BisI | GCNGC | 2 cut(s) | 92, 225 |
| BlsI | GCNGC | 2 cut(s) | 93, 226 |
| BpmI | CTGGAG | 1 cut(s) | 234 |
| BsaI | GGTCTC | 2 cut(s) | 19, 252 |
| BsaJI | CCNNGG | 1 cut(s) | 388 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 103, 133 |
| Bse21I | CCTNAGG | 1 cut(s) | 123 |
| Bse3DI | GCAATG | 1 cut(s) | 338 |
| BseDI | CCNNGG | 1 cut(s) | 388 |
| BseGI | GGATG | 1 cut(s) | 412 |
| BseMI | GCAATG | 1 cut(s) | 338 |
| BseMII | CTCAG | 1 cut(s) | 137 |
| BseRI | GAGGAG | 3 cut(s) | 105, 108, 111 |
| BseXI | GCAGC | 2 cut(s) | 103, 211 |
| BsmAI | GTCTC | 3 cut(s) | 19, 252, 423 |
| Bso31I | GGTCTC | 2 cut(s) | 19, 252 |
| Bsp143I | GATC | 1 cut(s) | 301 |
| BspCNI | CTCAG | 1 cut(s) | 136 |
| BspTNI | GGTCTC | 2 cut(s) | 19, 252 |
| BsrDI | GCAATG | 1 cut(s) | 338 |
| BssECI | CCNNGG | 1 cut(s) | 388 |
| BssMI | GATC | 1 cut(s) | 301 |
| BssT1I | CCWWGG | 1 cut(s) | 388 |
| Bst4CI | ACNGT | 2 cut(s) | 86, 246 |
| BstC8I | GCNNGC | 1 cut(s) | 358 |
| BstDEI | CTNAG | 1 cut(s) | 123 |
| BstF5I | GGATG | 1 cut(s) | 412 |
| BstKTI | GATC | 1 cut(s) | 304 |
| BstMAI | GTCTC | 3 cut(s) | 19, 252, 423 |
| BstMBI | GATC | 1 cut(s) | 301 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 221, 262 |
| BstV1I | GCAGC | 2 cut(s) | 103, 211 |
| Bsu36I | CCTNAGG | 1 cut(s) | 123 |
| BtsCI | GGATG | 1 cut(s) | 412 |
| Cac8I | GCNNGC | 1 cut(s) | 358 |
| CviAII | CATG | 3 cut(s) | 16, 221, 305 |
| CviJI | RGCY | 8 cut(s) | 9, 94, 128, 133, 215, 265, 284, 310 |
| CviKI_1 | RGCY | 8 cut(s) | 9, 94, 128, 133, 215, 265, 284, 310 |
| DdeI | CTNAG | 1 cut(s) | 123 |
| DpnI | GATC | 1 cut(s) | 303 |
| DpnII | GATC | 1 cut(s) | 301 |
| Eco130I | CCWWGG | 1 cut(s) | 388 |
| Eco31I | GGTCTC | 2 cut(s) | 19, 252 |
| Eco81I | CCTNAGG | 1 cut(s) | 123 |
| EcoT14I | CCWWGG | 1 cut(s) | 388 |
| ErhI | CCWWGG | 1 cut(s) | 388 |
| FaeI | CATG | 3 cut(s) | 19, 224, 308 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 249, 281 |
| FatI | CATG | 3 cut(s) | 15, 220, 304 |
| FbaI | TGATCA | 1 cut(s) | 301 |
| Fnu4HI | GCNGC | 2 cut(s) | 92, 225 |
| FokI | GGATG | 1 cut(s) | 419 |
| Fsp4HI | GCNGC | 2 cut(s) | 92, 225 |
| FspBI | CTAG | 3 cut(s) | 95, 198, 281 |
| GluI | GCNGC | 2 cut(s) | 92, 225 |
| GsuI | CTGGAG | 1 cut(s) | 234 |
| Hin1II | CATG | 3 cut(s) | 19, 224, 308 |
| HinfI | GANTC | 5 cut(s) | 112, 155, 194, 329, 335 |
| Hpy166II | GTNNAC | 1 cut(s) | 142 |
| Hpy188I | TCNGA | 1 cut(s) | 334 |
| Hpy188III | TCNNGA | 1 cut(s) | 251 |
| Hpy8I | GTNNAC | 1 cut(s) | 142 |
| HpyAV | CCTTC | 2 cut(s) | 157, 287 |
| HpyCH4III | ACNGT | 2 cut(s) | 86, 246 |
| HpyCH4V | TGCA | 4 cut(s) | 62, 343, 360, 425 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 221, 262 |
| HpyF3I | CTNAG | 1 cut(s) | 123 |
| Hsp92II | CATG | 3 cut(s) | 19, 224, 308 |
| Ksp22I | TGATCA | 1 cut(s) | 301 |
| Kzo9I | GATC | 1 cut(s) | 301 |
| LpnPI | CCDG | 4 cut(s) | 47, 110, 201, 264 |
| Lsp1109I | GCAGC | 2 cut(s) | 103, 211 |
| MaeI | CTAG | 3 cut(s) | 95, 198, 281 |
| MaeIII | GTNAC | 1 cut(s) | 409 |
| MalI | GATC | 1 cut(s) | 303 |
| MboI | GATC | 1 cut(s) | 301 |
| MboII | GAAGA | 3 cut(s) | 175, 363, 433 |
| MluCI | AATT | 3 cut(s) | 361, 376, 431 |
| MlyI | GAGTC | 3 cut(s) | 106, 149, 329 |
| MmeI | TCCRAC | 1 cut(s) | 89 |
| MnlI | CCTC | 6 cut(s) | 39, 114, 126, 129, 132, 397 |
| MroXI | GAANNNNTTC | 1 cut(s) | 146 |
| MseI | TTAA | 1 cut(s) | 135 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 221, 262 |
| NdeII | GATC | 1 cut(s) | 301 |
| NlaIII | CATG | 3 cut(s) | 19, 224, 308 |
| PdmI | GAANNNNTTC | 1 cut(s) | 146 |
| PfeI | GAWTC | 2 cut(s) | 194, 329 |
| PkrI | GCNGC | 2 cut(s) | 93, 226 |
| PleI | GAGTC | 3 cut(s) | 106, 149, 329 |
| PpsI | GAGTC | 3 cut(s) | 106, 149, 329 |
| SaqAI | TTAA | 1 cut(s) | 135 |
| SatI | GCNGC | 2 cut(s) | 92, 225 |
| Sau3AI | GATC | 1 cut(s) | 301 |
| SchI | GAGTC | 3 cut(s) | 106, 149, 329 |
| SetI | ASST | 6 cut(s) | 11, 31, 96, 267, 286, 319 |
| Sse9I | AATT | 3 cut(s) | 361, 376, 431 |
| SspMI | CTAG | 3 cut(s) | 95, 198, 281 |
| StyI | CCWWGG | 1 cut(s) | 388 |
| TaaI | ACNGT | 2 cut(s) | 86, 246 |
| TasI | AATT | 3 cut(s) | 361, 376, 431 |
| TfiI | GAWTC | 2 cut(s) | 194, 329 |
| Tru1I | TTAA | 1 cut(s) | 135 |
| Tru9I | TTAA | 1 cut(s) | 135 |
| TseI | GCWGC | 2 cut(s) | 91, 224 |
| TspDTI | ATGAA | 1 cut(s) | 176 |
| TspGWI | ACGGA | 1 cut(s) | 278 |
| XmnI | GAANNNNTTC | 1 cut(s) | 146 |
| XspI | CTAG | 3 cut(s) | 95, 198, 281 |