Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0018667

Physical Location & Seq

Genomic Coordinates Forward (+)

71792708 .. 71806103

Gene Structure 13396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG416100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCCCGCTGGAGGCGTTTTGGTGGGATTGGTTGCACTCTCAAAAGTTGGAGCTCTTGGCAAGAGGGTTTTCCAGCGATTCTTGATCCGACCCATGGTTTGGTTGGAGAGAGTAGCTCTCGACCAATGACATGGCGTGGTCAGGGAGAATTTCAAGTGACCGGTTTGACACGCGGCGAGGCTGGCGCAGTTGCTTACGAATTCGTAGACCAAGAAGACGTTGTCGCCGGAGACGGAGGCACCGAAGAGCTTGACGATGGAGGTGTGGTGGCTGCGGCAAAGCATGGAGAGCCGGTTCTTGAGTTCTTGGGTTTCGAGCCTGTGGCGGAACTTGCGCTGGAAGACGATGGCGTCTCTGCCGCAGAGGGTGCAGCGCCAGGAGGGGGTGAAGGAGGAGGAGCTGAAGCGCTTGGCGAGGAAGTTGTTGGTGGCGGCGCAGATTTCGGAGAGGTCGTAGAGGTTAGGATTTTCGGGGAGGGAGAGGTGGAAGCTGGTGAGGGAGGTTTGGCAAGAGGTGGAGGCGATGGAGGAGAGCTTCTAGCTTATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

183

Amino Acids

18.53

Weight (kDa)

4.06

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018667)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000021160 RLG00000027272
rosa_multiflora	Rmu_sc0001694.1_g000011 Rmu_sc0012684.1_g000003
rosa_rugosa	Rorug01G0091500 Rorug06G0032100
rosa_samantha	Rh5AG416100 Rh5DG340000 Rh7AG456400
rosa_wichuraiana	Rw2G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AccB1I	GGYRCC	1 cut(s)	239
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	174
AciI	CCGC	6 cut(s)	7, 174, 275, 326, 360, 432
AclWI	GGATC	1 cut(s)	80
AcsI	RAATTY	2 cut(s)	149, 200
AcuI	CTGAAG	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	351
AfeI	AGCGCT	1 cut(s)	408
AfiI	CCNNNNNNNGG	4 cut(s)	12, 95, 100, 383
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	376
AloI	GAACNNNNNNTCC	2 cut(s)	279, 311
AluBI	AGCT	7 cut(s)	54, 117, 250, 401, 491, 535, 542
AluI	AGCT	7 cut(s)	54, 117, 250, 401, 491, 535, 542
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	2 cut(s)	225, 358
AlwI	GGATC	1 cut(s)	80
Aor51HI	AGCGCT	1 cut(s)	408
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	272, 371
ApoI	RAATTY	2 cut(s)	149, 200
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
AsiGI	ACCGGT	1 cut(s)	161
AspLEI	GCGC	5 cut(s)	188, 337, 376, 409, 437
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	398, 506
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	56
BbsI	GAAGAC	2 cut(s)	222, 348
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	259, 383
BccI	CCATC	3 cut(s)	251, 341, 518
BciT130I	CCWGG	1 cut(s)	378
BcoDI	GTCTC	2 cut(s)	225, 358
BfaI	CTAG	1 cut(s)	539
BfoI	RGCGCY	2 cut(s)	377, 410
BisI	GCNGC	6 cut(s)	175, 273, 276, 360, 372, 433
BlsI	GCNGC	6 cut(s)	176, 274, 277, 361, 373, 434
Bme1390I	CCNGG	1 cut(s)	378
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	378
BpiI	GAAGAC	2 cut(s)	222, 348
BplI	GAGNNNNNCTC	4 cut(s)	101, 133, 103, 135
BpmI	CTGGAG	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	94
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	6 cut(s)	252, 279, 282, 309, 438, 468
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 95, 100, 383
Bse118I	RCCGGY	2 cut(s)	161, 292
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	94
BseLI	CCNNNNNNNGG	4 cut(s)	12, 95, 100, 383
BseRI	GAGGAG	3 cut(s)	408, 411, 543
BseXI	GCAGC	2 cut(s)	259, 383
BsgI	GTGCAG	1 cut(s)	390
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	239
BshTI	ACCGGT	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	162, 228, 293
BslI	CCNNNNNNNGG	4 cut(s)	12, 95, 100, 383
BsmAI	GTCTC	2 cut(s)	225, 358
BsmBI	CGTCTC	2 cut(s)	225, 358
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	85
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	6 cut(s)	7, 174, 275, 326, 360, 432
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	80
BspQI	GCTCTTC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	239
BsrFI	RCCGGY	2 cut(s)	161, 292
BssAI	RCCGGY	2 cut(s)	161, 292
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	1 cut(s)	85
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	378
Bst6I	CTCTTC	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	351
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	2 cut(s)	7, 184
BstDSI	CCRYGG	1 cut(s)	94
BstFNI	CGCG	1 cut(s)	174
BstH2I	RGCGCY	2 cut(s)	377, 410
BstHHI	GCGC	5 cut(s)	188, 337, 376, 409, 437
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	2 cut(s)	225, 358
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	4 cut(s)	183, 289, 332, 368
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	259, 383
BstV2I	GAAGAC	2 cut(s)	222, 348
BstXI	CCANNNNNNTGG	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	94
BtgZI	GCGATG	1 cut(s)	537
Cac8I	GCNNGC	2 cut(s)	7, 184
CfoI	GCGC	5 cut(s)	188, 337, 376, 409, 437
Cfr10I	RCCGGY	2 cut(s)	161, 292
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	340
CspAI	ACCGGT	1 cut(s)	161
CviAII	CATG	3 cut(s)	95, 132, 284
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	341
Ecl136II	GAGCTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	56
Eco47III	AGCGCT	1 cut(s)	408
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	423
EcoICRI	GAGCTC	1 cut(s)	54
EcoRI	GAATTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	94
Esp3I	CGTCTC	2 cut(s)	225, 358
FaeI	CATG	3 cut(s)	98, 135, 287
FaiI	YATR	4 cut(s)	96, 133, 285, 546
FatI	CATG	3 cut(s)	94, 131, 283
FauI	CCCGC	1 cut(s)	14
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	6 cut(s)	175, 273, 276, 360, 372, 433
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	6 cut(s)	175, 273, 276, 360, 372, 433
FspBI	CTAG	1 cut(s)	539
GlaI	GCGC	5 cut(s)	187, 336, 375, 408, 436
GluI	GCNGC	6 cut(s)	175, 273, 276, 360, 372, 433
GsuI	CTGGAG	1 cut(s)	31
HaeII	RGCGCY	2 cut(s)	377, 410
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	162, 228, 293
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	5 cut(s)	188, 337, 376, 409, 437
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	98, 135, 287
Hin6I	GCGC	5 cut(s)	186, 335, 374, 407, 435
HinP1I	GCGC	5 cut(s)	186, 335, 374, 407, 435
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	3 cut(s)	162, 228, 293
HphI	GGTGA	2 cut(s)	398, 506
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	2 cut(s)	90, 446
Hpy188III	TCNNGA	3 cut(s)	83, 120, 299
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	2 cut(s)	36, 371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	183, 289, 332, 368
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	3 cut(s)	98, 135, 287
HspAI	GCGC	5 cut(s)	186, 335, 374, 407, 435
Kzo9I	GATC	1 cut(s)	85
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	2 cut(s)	51, 398
Lsp1109I	GCAGC	2 cut(s)	259, 383
MaeI	CTAG	1 cut(s)	539
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	3 cut(s)	227, 257, 353
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	2 cut(s)	149, 200
MmeI	TCCRAC	3 cut(s)	29, 85, 113
MspA1I	CMGCKG	1 cut(s)	9
MspI	CCGG	3 cut(s)	162, 228, 293
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	4 cut(s)	183, 289, 332, 368
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	3 cut(s)	98, 135, 287
NlaIV	GGNNCC	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 450
PfeI	GAWTC	1 cut(s)	79
PflFI	GACNNNGTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	100
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	6 cut(s)	176, 274, 277, 361, 373, 434
Psp124BI	GAGCTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	240
SatI	GCNGC	6 cut(s)	175, 273, 276, 360, 372, 433
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	149, 200
SsiI	CCGC	6 cut(s)	7, 174, 275, 326, 360, 432
SspMI	CTAG	1 cut(s)	539
SstI	GAGCTC	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	94
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	121, 315
TasI	AATT	2 cut(s)	149, 200
TauI	GCSGC	4 cut(s)	177, 278, 362, 435
TfiI	GAWTC	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	272, 371
Tsp45I	GTSAC	1 cut(s)	157
TspGWI	ACGGA	1 cut(s)	249
Tth111I	GACNNNGTC	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	100
XapI	RAATTY	2 cut(s)	149, 200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.