Rh7AG456400

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0018667
Physical Location & Seq
Forward (+)
62671313 .. 62671621
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG456400.1

Sequence Viewer

Length: 309 bp
ATGAAAATTAATATGGATGGTTCTTATGATGGTCCAACTAGACAGGGTGGTATTGGTGTGATCATTAGAGATTCCTCTGGAGCCTGTGTTGGTAGATTTTACAGATCAGTCGATAATGTCTCTTCCGCAGAACAAGTTGAGGTGTTGGCGGGGAGAGCAGCTGTTTCACATGCCCTAGAGCATGGTCTCTCCCCGGTCATATTTGAGATAGATTCTTTGTTACTTGTTAATGCAGTCAAGCAGAGCGTCATCCCCCATACTTCCCCTTTGGGTCGTGTGTATGATGATATTATCTGCGATTTCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 zf-RVT

Protein Analysis

102

Amino Acids

10.92

Weight (kDa)

5.11

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 4 - 97 2.1e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018667)

Species Orthologous Gene IDs
rosa_laevigata RLG00000021160 RLG00000027272
rosa_multiflora Rmu_sc0001694.1_g000011 Rmu_sc0012684.1_g000003
rosa_rugosa Rorug01G0091500 Rorug06G0032100
rosa_samantha Rh5AG416100 Rh5DG340000 Rh7AG456400
rosa_wichuraiana Rw2G017880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 126, 149
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw26I GTCTC 2 cut(s) 124, 191
ApeKI GCWGC 1 cut(s) 158
AseI ATTAAT 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 194
AvaII GGWCC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 170
BccI CCATC 2 cut(s) 11, 23
BclI TGATCA 1 cut(s) 60
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 124, 191
BfaI CTAG 2 cut(s) 39, 176
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 194
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 2 cut(s) 22, 249
BseXI GCAGC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 194
BsmAI GTCTC 2 cut(s) 124, 191
Bso31I GGTCTC 1 cut(s) 191
Bsp143I GATC 2 cut(s) 60, 104
BspACI CCGC 2 cut(s) 126, 149
BspLI GGNNCC 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 60, 104
Bst6I CTCTTC 1 cut(s) 127
BstF5I GGATG 2 cut(s) 22, 249
BstKTI GATC 2 cut(s) 63, 107
BstMAI GTCTC 2 cut(s) 124, 191
BstMBI GATC 2 cut(s) 60, 104
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 170
BtsCI GGATG 2 cut(s) 22, 249
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 1 cut(s) 235
CviAII CATG 2 cut(s) 170, 182
CviJI RGCY 2 cut(s) 83, 161
CviKI_1 RGCY 2 cut(s) 83, 161
DpnI GATC 2 cut(s) 62, 106
DpnII GATC 2 cut(s) 60, 104
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 32
FaeI CATG 2 cut(s) 173, 185
FaiI YATR 7 cut(s) 14, 27, 171, 183, 200, 258, 282
FatI CATG 2 cut(s) 169, 181
FauI CCCGC 1 cut(s) 142
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 2 cut(s) 29, 236
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 2 cut(s) 39, 176
GluI GCNGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 99
HapII CCGG 1 cut(s) 194
HgaI GACGC 1 cut(s) 235
Hin1II CATG 2 cut(s) 173, 185
HinfI GANTC 2 cut(s) 71, 212
HpaII CCGG 1 cut(s) 194
Hpy188III TCNNGA 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
Hsp92II CATG 2 cut(s) 173, 185
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 2 cut(s) 60, 104
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 4 cut(s) 29, 63, 97, 207
Lsp1109I GCAGC 1 cut(s) 170
MaeI CTAG 2 cut(s) 39, 176
MaeIII GTNAC 1 cut(s) 219
MalI GATC 2 cut(s) 62, 106
MboI GATC 2 cut(s) 60, 104
MboII GAAGA 1 cut(s) 114
MluCI AATT 1 cut(s) 6
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 2 cut(s) 85, 133
MseI TTAA 2 cut(s) 9, 228
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 155
NciI CCSGG 1 cut(s) 194
NdeII GATC 2 cut(s) 60, 104
NlaIII CATG 2 cut(s) 173, 185
NlaIV GGNNCC 1 cut(s) 82
NspI RCATGY 1 cut(s) 173
PfeI GAWTC 2 cut(s) 71, 212
PkrI GCNGC 1 cut(s) 160
PshBI ATTAAT 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 161
SaqAI TTAA 2 cut(s) 9, 228
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 2 cut(s) 60, 104
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 194
SetI ASST 2 cut(s) 144, 163
SinI GGWCC 1 cut(s) 32
Sse9I AATT 1 cut(s) 6
SsiI CCGC 2 cut(s) 126, 149
SspMI CTAG 2 cut(s) 39, 176
StyD4I CCNGG 1 cut(s) 192
TaqI TCGA 1 cut(s) 111
TasI AATT 1 cut(s) 6
TfiI GAWTC 2 cut(s) 71, 212
Tru1I TTAA 2 cut(s) 9, 228
Tru9I TTAA 2 cut(s) 9, 228
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 32
VspI ATTAAT 1 cut(s) 9
XceI RCATGY 1 cut(s) 173
XspI CTAG 2 cut(s) 39, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.