Rh5DG340000

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018667
Physical Location & Seq
Reverse (-)
46170833 .. 46171318
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG340000.1

Sequence Viewer

Length: 486 bp
ATGGCCTCTCCACTACAACTTTCTATTAACCATGACTTCACAAACTTTAAGGAATGGTTTTTGTCTTATATGGAGCATTTTACAAAGGAACAGGTTGATCTATTTATGGTTTTATTTTGGACTATTTGGATGACAAGGAATGATAAGCTCTGGCATGGTTTGGAGAGTTCCCCTGCTGATGTTAGTATTAAGGGTATTGTGAGGCTTCAAGCTTTTCACGCTGCAAACCCTTACCACAAAACTAACCTTAGGCAGCTAGTTCGTCCTCGCTGGACTCCTCCTCCTCAGGCTTGGCTTAAAGTGAACATAGATGGAGCCTTCAATGCGTCAATGAAGATGGGTGGCATTGGGTTGGTGATACATGATTCTAGTGGGCATTTTGTGGCTGGTCATGCTACCCTTCTCACACATATATGGTCTCCAGAGCAGGTTGAGCTTATGGCAGTCCTTCTAGCTGTCCGGTTTGTCCTTGATCATAGGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

161

Amino Acids

18.56

Weight (kDa)

8.16

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 102 - 160 1.1e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018667)

Species Orthologous Gene IDs
rosa_laevigata RLG00000021160 RLG00000027272
rosa_multiflora Rmu_sc0001694.1_g000011 Rmu_sc0012684.1_g000003
rosa_rugosa Rorug01G0091500 Rorug06G0032100
rosa_samantha Rh5AG416100 Rh5DG340000 Rh7AG456400
rosa_wichuraiana Rw2G017880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 418
AgsI TTSAA 2 cut(s) 209, 322
AluBI AGCT 5 cut(s) 148, 212, 256, 436, 455
AluI AGCT 5 cut(s) 148, 212, 256, 436, 455
Alw26I GTCTC 1 cut(s) 423
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 221, 253
AsuHPI GGTGA 1 cut(s) 367
AxyI CCTNAGG 2 cut(s) 248, 285
BbvI GCAGC 2 cut(s) 208, 265
BccI CCATC 2 cut(s) 305, 331
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BclI TGATCA 1 cut(s) 472
BcoDI GTCTC 1 cut(s) 423
BfaI CTAG 3 cut(s) 257, 369, 452
BfuAI ACCTGC 1 cut(s) 418
BisI GCNGC 2 cut(s) 222, 254
BlsI GCNGC 2 cut(s) 223, 255
BmiI GGNNCC 1 cut(s) 316
BpmI CTGGAG 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 423
BsaWI WCCGGW 1 cut(s) 459
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bse21I CCTNAGG 2 cut(s) 248, 285
BseGI GGATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 299
BseRI GAGGAG 3 cut(s) 267, 270, 273
BseXI GCAGC 2 cut(s) 208, 265
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 460
BsmAI GTCTC 1 cut(s) 423
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 423
Bsp143I GATC 2 cut(s) 97, 472
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 423
BssMI GATC 2 cut(s) 97, 472
BstDEI CTNAG 2 cut(s) 248, 285
BstF5I GGATG 1 cut(s) 135
BstKTI GATC 2 cut(s) 100, 475
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 2 cut(s) 97, 472
BstMWI GCNNNNNNNGC 4 cut(s) 218, 323, 392, 433
BstV1I GCAGC 2 cut(s) 208, 265
Bsu36I CCTNAGG 2 cut(s) 248, 285
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 135
BveI ACCTGC 1 cut(s) 418
CseI GACGC 1 cut(s) 315
CviAII CATG 4 cut(s) 32, 155, 362, 392
DdeI CTNAG 2 cut(s) 248, 285
DpnI GATC 2 cut(s) 99, 474
DpnII GATC 2 cut(s) 97, 472
Eco31I GGTCTC 1 cut(s) 423
Eco81I CCTNAGG 2 cut(s) 248, 285
FaeI CATG 4 cut(s) 35, 158, 365, 395
FatI CATG 4 cut(s) 31, 154, 361, 391
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 2 cut(s) 222, 254
FokI GGATG 1 cut(s) 142
Fsp4HI GCNGC 2 cut(s) 222, 254
FspBI CTAG 3 cut(s) 257, 369, 452
GluI GCNGC 2 cut(s) 222, 254
GsuI CTGGAG 1 cut(s) 405
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 460
HgaI GACGC 1 cut(s) 315
Hin1II CATG 4 cut(s) 35, 158, 365, 395
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 2 cut(s) 274, 365
HpaII CCGG 1 cut(s) 460
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 1 cut(s) 304
Hpy188III TCNNGA 1 cut(s) 422
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 3 cut(s) 328, 410, 458
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 323, 392, 433
HpyF3I CTNAG 2 cut(s) 248, 285
Hsp92II CATG 4 cut(s) 35, 158, 365, 395
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 2 cut(s) 97, 472
LmnI GCTCC 2 cut(s) 73, 314
LpnPI CCDG 9 cut(s) 77, 136, 186, 256, 272, 372, 413, 435, 473
Lsp1109I GCAGC 2 cut(s) 208, 265
MaeI CTAG 3 cut(s) 257, 369, 452
MalI GATC 2 cut(s) 99, 474
MboI GATC 2 cut(s) 97, 472
MboII GAAGA 1 cut(s) 346
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 6 cut(s) 16, 195, 276, 288, 291, 294
MseI TTAA 5 cut(s) 27, 48, 189, 297, 484
MslI CAYNNNNRTG 1 cut(s) 412
MspI CCGG 1 cut(s) 460
MwoI GCNNNNNNNGC 4 cut(s) 218, 323, 392, 433
NdeII GATC 2 cut(s) 97, 472
NlaIII CATG 4 cut(s) 35, 158, 365, 395
NlaIV GGNNCC 1 cut(s) 316
PfeI GAWTC 1 cut(s) 365
PkrI GCNGC 2 cut(s) 223, 255
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 412
SaqAI TTAA 5 cut(s) 27, 48, 189, 297, 484
SatI GCNGC 2 cut(s) 222, 254
Sau3AI GATC 2 cut(s) 97, 472
SchI GAGTC 1 cut(s) 268
SetI ASST 8 cut(s) 96, 150, 214, 249, 258, 432, 438, 457
SmiMI CAYNNNNRTG 1 cut(s) 412
SspMI CTAG 3 cut(s) 257, 369, 452
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 5 cut(s) 27, 48, 189, 297, 484
Tru9I TTAA 5 cut(s) 27, 48, 189, 297, 484
TseI GCWGC 2 cut(s) 221, 253
TspDTI ATGAA 1 cut(s) 347
XspI CTAG 3 cut(s) 257, 369, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.