WW domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G41020 AT2G41020 |
| fragaria_vesca | FvH4_1g29230 FvH4_1g29230 FvH4_1g29230 FvH4_1g29230 FvH4_1g29230 FvH4_1g29230 FvH4_1g29230 FvH4_1g29230 FvH4_1g29230 FvH4_1g29230 FvH4_1g29230 FvH4_1g29230 FvH4_1g29230 FvH4_1g29230 FvH4_1g29230 |
| malus_domestica | MD00G1150000.v1.1 |
| prunus_persica | Prupe.7G020500_v2.0.a1 Prupe.7G020500_v2.0.a1 Prupe.7G020500_v2.0.a1 Prupe.7G020500_v2.0.a1 |
| pyrus_communis | pycom12g09100 |
| rosa_chinensis | RchiOBHm_Chr3g0494671 |
| rosa_laevigata | RLG00000022665 |
| rosa_multiflora | Rmu_co8203624.1_g000001 Rmu_sc0000840.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00390980 |
| rosa_rugosa | Rorug03G0266500 Rorug03G0266600 Rorug03G0266700 Rorug03G0266800 Rorug03G0266900 Rorug03G0266900 |
| rosa_samantha | Rh3AG316300 Rh3BG351700 Rh3CG348600 Rh3DG351300 |
| rosa_wichuraiana | Rw3G027610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 87 |
| Acc36I | ACCTGC | 2 cut(s) | 694, 1397 |
| Acc65I | GGTACC | 1 cut(s) | 1409 |
| AccB1I | GGYRCC | 1 cut(s) | 1409 |
| AccIII | TCCGGA | 1 cut(s) | 733 |
| AciI | CCGC | 3 cut(s) | 29, 348, 614 |
| AclWI | GGATC | 4 cut(s) | 203, 906, 1178, 1191 |
| AcsI | RAATTY | 3 cut(s) | 397, 990, 1033 |
| AcuI | CTGAAG | 1 cut(s) | 552 |
| AfaI | GTAC | 5 cut(s) | 342, 370, 385, 1016, 1411 |
| AfeI | AGCGCT | 1 cut(s) | 217 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 32, 350, 632, 1124, 1223 |
| AflII | CTTAAG | 1 cut(s) | 494 |
| AflIII | ACRYGT | 1 cut(s) | 799 |
| AgsI | TTSAA | 4 cut(s) | 77, 238, 458, 1033 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1053 |
| AjiI | CACGTC | 1 cut(s) | 963 |
| AjnI | CCWGG | 2 cut(s) | 343, 601 |
| AluBI | AGCT | 8 cut(s) | 158, 260, 572, 839, 883, 1029, 1200, 1265 |
| AluI | AGCT | 8 cut(s) | 158, 260, 572, 839, 883, 1029, 1200, 1265 |
| Alw21I | GWGCWC | 2 cut(s) | 262, 1162 |
| Alw26I | GTCTC | 3 cut(s) | 650, 808, 1349 |
| AlwI | GGATC | 4 cut(s) | 203, 906, 1178, 1191 |
| Aor13HI | TCCGGA | 1 cut(s) | 733 |
| Aor51HI | AGCGCT | 1 cut(s) | 217 |
| AoxI | GGCC | 3 cut(s) | 949, 1089, 1237 |
| ApeKI | GCWGC | 2 cut(s) | 83, 1262 |
| ApoI | RAATTY | 3 cut(s) | 397, 990, 1033 |
| Asp718I | GGTACC | 1 cut(s) | 1409 |
| AspLEI | GCGC | 2 cut(s) | 88, 218 |
| AspS9I | GGNCC | 2 cut(s) | 1192, 1283 |
| AsuC2I | CCSGG | 1 cut(s) | 33 |
| AsuHPI | GGTGA | 5 cut(s) | 711, 1034, 1085, 1305, 1354 |
| AvaII | GGWCC | 2 cut(s) | 1192, 1283 |
| BaeGI | GKGCMC | 1 cut(s) | 1401 |
| BamHI | GGATCC | 1 cut(s) | 1183 |
| BanI | GGYRCC | 1 cut(s) | 1409 |
| BanII | GRGCYC | 1 cut(s) | 262 |
| BauI | CACGAG | 2 cut(s) | 985, 1257 |
| BbsI | GAAGAC | 2 cut(s) | 800, 992 |
| Bbv12I | GWGCWC | 2 cut(s) | 262, 1162 |
| BbvI | GCAGC | 2 cut(s) | 70, 1274 |
| BccI | CCATC | 6 cut(s) | 478, 600, 724, 933, 1318, 1327 |
| BceAI | ACGGC | 1 cut(s) | 346 |
| BciT130I | CCWGG | 2 cut(s) | 345, 603 |
| BclI | TGATCA | 1 cut(s) | 301 |
| BcnI | CCSGG | 1 cut(s) | 33 |
| BcoDI | GTCTC | 3 cut(s) | 650, 808, 1349 |
| BfaI | CTAG | 3 cut(s) | 66, 393, 1026 |
| BfmI | CTRYAG | 2 cut(s) | 1059, 1278 |
| BfoI | RGCGCY | 1 cut(s) | 219 |
| BfrI | CTTAAG | 1 cut(s) | 494 |
| BfuAI | ACCTGC | 2 cut(s) | 694, 1397 |
| BisI | GCNGC | 3 cut(s) | 84, 615, 1263 |
| BlsI | GCNGC | 3 cut(s) | 85, 616, 1264 |
| BmcAI | AGTACT | 1 cut(s) | 385 |
| Bme1390I | CCNGG | 3 cut(s) | 33, 345, 603 |
| Bme18I | GGWCC | 2 cut(s) | 1192, 1283 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1053 |
| BmgBI | CACGTC | 1 cut(s) | 963 |
| BmgT120I | GGNCC | 2 cut(s) | 1192, 1283 |
| BmiI | GGNNCC | 3 cut(s) | 1185, 1194, 1411 |
| BmrFI | CCNGG | 3 cut(s) | 33, 345, 603 |
| BmsI | GCATC | 5 cut(s) | 238, 520, 911, 1201, 1335 |
| BoxI | GACNNNNGTC | 1 cut(s) | 800 |
| BpiI | GAAGAC | 2 cut(s) | 800, 992 |
| BpuEI | CTTGAG | 1 cut(s) | 206 |
| BpuMI | CCSGG | 1 cut(s) | 33 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1440 |
| BsaJI | CCNNGG | 3 cut(s) | 174, 246, 1219 |
| BsaWI | WCCGGW | 1 cut(s) | 733 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 32, 350, 632, 1124, 1223 |
| Bse1I | ACTGG | 2 cut(s) | 48, 1012 |
| Bse3DI | GCAATG | 1 cut(s) | 979 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1440 |
| BseAI | TCCGGA | 1 cut(s) | 733 |
| BseBI | CCWGG | 2 cut(s) | 345, 603 |
| BseDI | CCNNGG | 3 cut(s) | 174, 246, 1219 |
| BseGI | GGATG | 7 cut(s) | 184, 435, 611, 763, 871, 944, 1177 |
| BseJI | GATNNNNATC | 1 cut(s) | 1440 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 32, 350, 632, 1124, 1223 |
| BseMI | GCAATG | 1 cut(s) | 979 |
| BseMII | CTCAG | 3 cut(s) | 870, 1158, 1344 |
| BseNI | ACTGG | 2 cut(s) | 48, 1012 |
| BseRI | GAGGAG | 2 cut(s) | 20, 682 |
| BseSI | GKGCMC | 1 cut(s) | 1401 |
| BseXI | GCAGC | 2 cut(s) | 70, 1274 |
| BseYI | CCCAGC | 3 cut(s) | 212, 1196, 1227 |
| BshFI | GGCC | 3 cut(s) | 951, 1091, 1239 |
| BshNI | GGYRCC | 1 cut(s) | 1409 |
| BsiHKAI | GWGCWC | 2 cut(s) | 262, 1162 |
| BsiSI | CCGG | 2 cut(s) | 33, 734 |
| BslFI | GGGAC | 2 cut(s) | 438, 1336 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 32, 350, 632, 1124, 1223 |
| BsmAI | GTCTC | 3 cut(s) | 650, 808, 1349 |
| BsmBI | CGTCTC | 1 cut(s) | 1349 |
| BsmFI | GGGAC | 2 cut(s) | 438, 1336 |
| BsnI | GGCC | 3 cut(s) | 951, 1091, 1239 |
| Bsp1286I | GDGCHC | 3 cut(s) | 262, 1162, 1401 |
| Bsp13I | TCCGGA | 1 cut(s) | 733 |
| Bsp143I | GATC | 5 cut(s) | 208, 301, 898, 1183, 1441 |
| Bsp19I | CCATGG | 1 cut(s) | 174 |
| BspACI | CCGC | 3 cut(s) | 29, 348, 614 |
| BspANI | GGCC | 3 cut(s) | 951, 1091, 1239 |
| BspCNI | CTCAG | 3 cut(s) | 871, 1159, 1345 |
| BspEI | TCCGGA | 1 cut(s) | 733 |
| BspLI | GGNNCC | 3 cut(s) | 1185, 1194, 1411 |
| BspMAI | CTGCAG | 1 cut(s) | 1063 |
| BspMI | ACCTGC | 2 cut(s) | 694, 1397 |
| BspPI | GGATC | 4 cut(s) | 203, 906, 1178, 1191 |
| BspT107I | GGYRCC | 1 cut(s) | 1409 |
| BspTI | CTTAAG | 1 cut(s) | 494 |
| BsrDI | GCAATG | 1 cut(s) | 979 |
| BsrI | ACTGG | 2 cut(s) | 48, 1012 |
| BssECI | CCNNGG | 3 cut(s) | 174, 246, 1219 |
| BssMI | GATC | 5 cut(s) | 208, 301, 898, 1183, 1441 |
| BssSI | CACGAG | 2 cut(s) | 985, 1257 |
| BssT1I | CCWWGG | 1 cut(s) | 174 |
| Bst2BI | CACGAG | 2 cut(s) | 985, 1257 |
| Bst2UI | CCWGG | 2 cut(s) | 345, 603 |
| Bst4CI | ACNGT | 1 cut(s) | 295 |
| Bst6I | CTCTTC | 3 cut(s) | 1135, 1295, 1387 |
| BstAFI | CTTAAG | 1 cut(s) | 494 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 635, 981 |
| BstC8I | GCNNGC | 3 cut(s) | 837, 1093, 1097 |
| BstDEI | CTNAG | 4 cut(s) | 316, 879, 1167, 1353 |
| BstDSI | CCRYGG | 2 cut(s) | 174, 1219 |
| BstF5I | GGATG | 7 cut(s) | 184, 435, 611, 763, 871, 944, 1177 |
| BstH2I | RGCGCY | 1 cut(s) | 219 |
| BstHHI | GCGC | 2 cut(s) | 88, 218 |
| BstKTI | GATC | 5 cut(s) | 211, 304, 901, 1186, 1444 |
| BstMAI | GTCTC | 3 cut(s) | 650, 808, 1349 |
| BstMBI | GATC | 5 cut(s) | 208, 301, 898, 1183, 1441 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 28, 266, 345, 635, 981 |
| BstNI | CCWGG | 2 cut(s) | 345, 603 |
| BstNSI | RCATGY | 2 cut(s) | 803, 1099 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 800 |
| BstSCI | CCNGG | 3 cut(s) | 31, 343, 601 |
| BstSFI | CTRYAG | 2 cut(s) | 1059, 1278 |
| BstSLI | GKGCMC | 1 cut(s) | 1401 |
| BstV1I | GCAGC | 2 cut(s) | 70, 1274 |
| BstV2I | GAAGAC | 2 cut(s) | 800, 992 |
| BstX2I | RGATCY | 1 cut(s) | 1183 |
| BstYI | RGATCY | 1 cut(s) | 1183 |
| BsuRI | GGCC | 3 cut(s) | 951, 1091, 1239 |
| BtgI | CCRYGG | 2 cut(s) | 174, 1219 |
| BtrI | CACGTC | 1 cut(s) | 963 |
| BtsCI | GGATG | 7 cut(s) | 184, 435, 611, 763, 871, 944, 1177 |
| BtsI | GCAGTG | 2 cut(s) | 56, 1272 |
| BtsIMutI | CAGTG | 2 cut(s) | 56, 1272 |
| BveI | ACCTGC | 2 cut(s) | 694, 1397 |
| Cac8I | GCNNGC | 3 cut(s) | 837, 1093, 1097 |
| CfoI | GCGC | 2 cut(s) | 88, 218 |
| Cfr13I | GGNCC | 2 cut(s) | 1192, 1283 |
| CseI | GACGC | 2 cut(s) | 1289, 1366 |
| Csp6I | GTAC | 5 cut(s) | 341, 369, 384, 1015, 1410 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 141, 176 |
| CviAII | CATG | 5 cut(s) | 175, 800, 925, 1018, 1096 |
| CviQI | GTAC | 5 cut(s) | 341, 369, 384, 1015, 1410 |
| DdeI | CTNAG | 4 cut(s) | 316, 879, 1167, 1353 |
| DpnI | GATC | 5 cut(s) | 210, 303, 900, 1185, 1443 |
| DpnII | GATC | 5 cut(s) | 208, 301, 898, 1183, 1441 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1053 |
| Eam1104I | CTCTTC | 3 cut(s) | 1135, 1295, 1387 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1053 |
| EarI | CTCTTC | 3 cut(s) | 1135, 1295, 1387 |
| EciI | GGCGGA | 1 cut(s) | 363 |
| Ecl136II | GAGCTC | 1 cut(s) | 260 |
| Eco130I | CCWWGG | 1 cut(s) | 174 |
| Eco147I | AGGCCT | 2 cut(s) | 951, 1239 |
| Eco24I | GRGCYC | 1 cut(s) | 262 |
| Eco47I | GGWCC | 2 cut(s) | 1192, 1283 |
| Eco47III | AGCGCT | 1 cut(s) | 217 |
| Eco53kI | GAGCTC | 1 cut(s) | 260 |
| Eco57I | CTGAAG | 1 cut(s) | 552 |
| EcoICRI | GAGCTC | 1 cut(s) | 260 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1283 |
| EcoRI | GAATTC | 1 cut(s) | 990 |
| EcoRII | CCWGG | 2 cut(s) | 343, 601 |
| EcoT14I | CCWWGG | 1 cut(s) | 174 |
| EcoT22I | ATGCAT | 1 cut(s) | 926 |
| EcoT38I | GRGCYC | 1 cut(s) | 262 |
| ErhI | CCWWGG | 1 cut(s) | 174 |
| Esp3I | CGTCTC | 1 cut(s) | 1349 |
| FaeI | CATG | 5 cut(s) | 178, 803, 928, 1021, 1099 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 622, 654 |
| FaqI | GGGAC | 2 cut(s) | 438, 1336 |
| FatI | CATG | 5 cut(s) | 174, 799, 924, 1017, 1095 |
| FauI | CCCGC | 1 cut(s) | 36 |
| FbaI | TGATCA | 1 cut(s) | 301 |
| Fnu4HI | GCNGC | 3 cut(s) | 84, 615, 1263 |
| FokI | GGATG | 7 cut(s) | 191, 442, 618, 770, 878, 951, 1184 |
| FriOI | GRGCYC | 1 cut(s) | 262 |
| Fsp4HI | GCNGC | 3 cut(s) | 84, 615, 1263 |
| FspBI | CTAG | 3 cut(s) | 66, 393, 1026 |
| FspI | TGCGCA | 1 cut(s) | 87 |
| GlaI | GCGC | 2 cut(s) | 87, 217 |
| GluI | GCNGC | 3 cut(s) | 84, 615, 1263 |
| GsaI | CCCAGC | 3 cut(s) | 216, 1200, 1231 |
| HaeII | RGCGCY | 1 cut(s) | 219 |
| HaeIII | GGCC | 3 cut(s) | 951, 1091, 1239 |
| HapII | CCGG | 2 cut(s) | 33, 734 |
| HgaI | GACGC | 2 cut(s) | 1289, 1366 |
| HhaI | GCGC | 2 cut(s) | 88, 218 |
| Hin1II | CATG | 5 cut(s) | 178, 803, 928, 1021, 1099 |
| Hin6I | GCGC | 2 cut(s) | 86, 216 |
| HinP1I | GCGC | 2 cut(s) | 86, 216 |
| HindIII | AAGCTT | 1 cut(s) | 837 |
| HinfI | GANTC | 4 cut(s) | 182, 411, 670, 824 |
| HpaII | CCGG | 2 cut(s) | 33, 734 |
| HphI | GGTGA | 5 cut(s) | 711, 1034, 1085, 1305, 1354 |
| Hpy188III | TCNNGA | 3 cut(s) | 299, 734, 846 |
| HpyAV | CCTTC | 1 cut(s) | 740 |
| HpyCH4III | ACNGT | 1 cut(s) | 295 |
| HpyCH4IV | ACGT | 3 cut(s) | 277, 962, 1156 |
| HpyCH4V | TGCA | 9 cut(s) | 44, 103, 629, 924, 975, 984, 1061, 1099, 1252 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 28, 266, 345, 635, 981 |
| HpyF3I | CTNAG | 4 cut(s) | 316, 879, 1167, 1353 |
| HpySE526I | ACGT | 3 cut(s) | 277, 962, 1156 |
| Hsp92II | CATG | 5 cut(s) | 178, 803, 928, 1021, 1099 |
| HspAI | GCGC | 2 cut(s) | 86, 216 |
| Kpn2I | TCCGGA | 1 cut(s) | 733 |
| KpnI | GGTACC | 1 cut(s) | 1413 |
| Ksp22I | TGATCA | 1 cut(s) | 301 |
| Kzo9I | GATC | 5 cut(s) | 208, 301, 898, 1183, 1441 |
| LmnI | GCTCC | 2 cut(s) | 226, 1219 |
| Lsp1109I | GCAGC | 2 cut(s) | 70, 1274 |
| LweI | GCATC | 5 cut(s) | 238, 520, 911, 1201, 1335 |
| MaeI | CTAG | 3 cut(s) | 66, 393, 1026 |
| MaeII | ACGT | 3 cut(s) | 277, 962, 1156 |
| MaeIII | GTNAC | 2 cut(s) | 311, 770 |
| MalI | GATC | 5 cut(s) | 210, 303, 900, 1185, 1443 |
| MboI | GATC | 5 cut(s) | 208, 301, 898, 1183, 1441 |
| MboII | GAAGA | 9 cut(s) | 184, 250, 690, 749, 805, 992, 1152, 1282, 1404 |
| MflI | RGATCY | 1 cut(s) | 1183 |
| MhlI | GDGCHC | 3 cut(s) | 262, 1162, 1401 |
| MlyI | GAGTC | 2 cut(s) | 679, 818 |
| MmeI | TCCRAC | 2 cut(s) | 388, 1318 |
| Mph1103I | ATGCAT | 1 cut(s) | 926 |
| MroI | TCCGGA | 1 cut(s) | 733 |
| MseI | TTAA | 5 cut(s) | 495, 525, 552, 651, 1038 |
| MslI | CAYNNNNRTG | 2 cut(s) | 864, 1418 |
| MspA1I | CMGCKG | 1 cut(s) | 1265 |
| MspCI | CTTAAG | 1 cut(s) | 494 |
| MspI | CCGG | 2 cut(s) | 33, 734 |
| MspR9I | CCNGG | 3 cut(s) | 33, 345, 603 |
| MvaI | CCWGG | 2 cut(s) | 345, 603 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 28, 266, 345, 635, 981 |
| NciI | CCSGG | 1 cut(s) | 33 |
| NcoI | CCATGG | 1 cut(s) | 174 |
| NdeII | GATC | 5 cut(s) | 208, 301, 898, 1183, 1441 |
| NlaIII | CATG | 5 cut(s) | 178, 803, 928, 1021, 1099 |
| NlaIV | GGNNCC | 3 cut(s) | 1185, 1194, 1411 |
| NmuCI | GTSAC | 1 cut(s) | 770 |
| NsbI | TGCGCA | 1 cut(s) | 87 |
| NsiI | ATGCAT | 1 cut(s) | 926 |
| NspI | RCATGY | 2 cut(s) | 803, 1099 |
| PaeI | GCATGC | 1 cut(s) | 1099 |
| PceI | AGGCCT | 2 cut(s) | 951, 1239 |
| PciI | ACATGT | 1 cut(s) | 799 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 336 |
| PfeI | GAWTC | 2 cut(s) | 182, 411 |
| PfoI | TCCNGGA | 1 cut(s) | 601 |
| PkrI | GCNGC | 3 cut(s) | 85, 616, 1264 |
| PleI | GAGTC | 2 cut(s) | 678, 818 |
| PpsI | GAGTC | 2 cut(s) | 678, 818 |
| PpuMI | RGGWCCY | 1 cut(s) | 1283 |
| PscI | ACATGT | 1 cut(s) | 799 |
| PshAI | GACNNNNGTC | 1 cut(s) | 800 |
| Psp124BI | GAGCTC | 1 cut(s) | 262 |
| Psp5II | RGGWCCY | 1 cut(s) | 1283 |
| Psp6I | CCWGG | 2 cut(s) | 343, 601 |
| PspFI | CCCAGC | 3 cut(s) | 212, 1196, 1227 |
| PspGI | CCWGG | 2 cut(s) | 343, 601 |
| PspN4I | GGNNCC | 3 cut(s) | 1185, 1194, 1411 |
| PspPI | GGNCC | 2 cut(s) | 1192, 1283 |
| PspPPI | RGGWCCY | 1 cut(s) | 1283 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 939, 971 |
| PstI | CTGCAG | 1 cut(s) | 1063 |
| PsuI | RGATCY | 1 cut(s) | 1183 |
| PvuII | CAGCTG | 1 cut(s) | 1265 |
| RsaI | GTAC | 5 cut(s) | 342, 370, 385, 1016, 1411 |
| RsaNI | GTAC | 5 cut(s) | 341, 369, 384, 1015, 1410 |
| RseI | CAYNNNNRTG | 2 cut(s) | 864, 1418 |
| SacI | GAGCTC | 1 cut(s) | 262 |
| SaqAI | TTAA | 5 cut(s) | 495, 525, 552, 651, 1038 |
| SatI | GCNGC | 3 cut(s) | 84, 615, 1263 |
| Sau3AI | GATC | 5 cut(s) | 208, 301, 898, 1183, 1441 |
| Sau96I | GGNCC | 2 cut(s) | 1192, 1283 |
| ScaI | AGTACT | 1 cut(s) | 385 |
| SchI | GAGTC | 2 cut(s) | 679, 818 |
| ScrFI | CCNGG | 3 cut(s) | 33, 345, 603 |
| SduI | GDGCHC | 3 cut(s) | 262, 1162, 1401 |
| SfaNI | GCATC | 5 cut(s) | 238, 520, 911, 1201, 1335 |
| SfcI | CTRYAG | 2 cut(s) | 1059, 1278 |
| SinI | GGWCC | 2 cut(s) | 1192, 1283 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 864, 1418 |
| SmlI | CTYRAG | 2 cut(s) | 221, 494 |
| SmoI | CTYRAG | 2 cut(s) | 221, 494 |
| SphI | GCATGC | 1 cut(s) | 1099 |
| SseBI | AGGCCT | 2 cut(s) | 951, 1239 |
| SsiI | CCGC | 3 cut(s) | 29, 348, 614 |
| SspMI | CTAG | 3 cut(s) | 66, 393, 1026 |
| SstI | GAGCTC | 1 cut(s) | 262 |
| StuI | AGGCCT | 2 cut(s) | 951, 1239 |
| StyD4I | CCNGG | 3 cut(s) | 31, 343, 601 |
| StyI | CCWWGG | 1 cut(s) | 174 |
| TaaI | ACNGT | 1 cut(s) | 295 |
| TaiI | ACGT | 3 cut(s) | 280, 965, 1159 |
| TaqI | TCGA | 2 cut(s) | 256, 847 |
| TatI | WGTACW | 2 cut(s) | 383, 1014 |
| TauI | GCSGC | 1 cut(s) | 617 |
| TfiI | GAWTC | 2 cut(s) | 182, 411 |
| Tru1I | TTAA | 5 cut(s) | 495, 525, 552, 651, 1038 |
| Tru9I | TTAA | 5 cut(s) | 495, 525, 552, 651, 1038 |
| TscAI | CASTG | 2 cut(s) | 63, 1279 |
| TseFI | GTSAC | 1 cut(s) | 770 |
| TseI | GCWGC | 2 cut(s) | 83, 1262 |
| Tsp45I | GTSAC | 1 cut(s) | 770 |
| TspDTI | ATGAA | 8 cut(s) | 432, 446, 774, 806, 831, 848, 882, 1191 |
| TspGWI | ACGGA | 3 cut(s) | 378, 442, 596 |
| TspRI | CASTG | 2 cut(s) | 63, 1279 |
| Vha464I | CTTAAG | 1 cut(s) | 494 |
| VpaK11BI | GGWCC | 2 cut(s) | 1192, 1283 |
| XapI | RAATTY | 3 cut(s) | 397, 990, 1033 |
| XceI | RCATGY | 2 cut(s) | 803, 1099 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1075 |
| XspI | CTAG | 3 cut(s) | 66, 393, 1026 |
| ZrmI | AGTACT | 1 cut(s) | 385 |
| Zsp2I | ATGCAT | 1 cut(s) | 926 |