Rorug03G0266500

WW domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002830
Physical Location & Seq
Forward (+)
26117721 .. 26120436
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0266500.1

Sequence Viewer

Length: 1155 bp
ATGACCACCCCCTCAAATGCCACAGAAAATAAGTCTGTGAATGTAGGGTTGGCAGATTATTTCGATGTTATTGCAGGGACTAGCACAGGTGGCCTTGTCACCGCCATGCTTACTGCCCCGGATCAAAACAACCGTCCCTTGTTTGCGGCTAACCAGATTGTCGATTTTTACCTTGAGCACTGCCCTAAAATATTCCCTCAAATCAATATTCCACTGTTTGGTAACGCCTTAGAAAATGCAAAGGGTGTATACGCACCAAAATATGATGGCAAGTATTTACACAAGCTTATCAAGGAAAAATTAGGAGACAGACGATTGAACCAGACATTGACCAACGTTGTGATCCCAACTTTTGATATAAGTTGCCTTCAACCAGCTATGTTCTCCACCTACGAGTTGAAAAGGAACAAGAAATTAGATCCGGCTCTACTGTCAGATATATGCATCGGAACTTCAGCAGCACCAACTTATCTTCCCTCGCATTATTTCAAAACCGCAACAAGAGAATTCCATCTCGTTGATGGCGGTGTGGCTGCTAATAACCCGGGTTTGACTGCTATAACCGAAGTGACAAAAGAAATCAAGAAGCGAAATTCTGACTTCTCTCCGGTTGAGGCAGCTGATCAGGGTAATAGGTTCCTCCTCATATCTTTGGGTACTGGTTCATCAGCAAAATCCAAGGACGATGCCACAGTAGCAGCTACGTGGGGTATTATGGCATGGTTGATGCAAGCCAACTTTCAATGTCCATTGTTAGATGTACTCACTGAAGCAAGTAGTGACATGGTAGATTGCCACCTTTCTACCATTTTCCACGCTCTTTGGTCTGACGATAACTACCTTCGAATTCAGGATGACCAATTGAGCACCGACTTGAATTCTATGGATAATGCTACGCCCGAAAACTTGAAAAAACTTGTAAAAGTGGGAGAGGCACTGTTAAAGAAACAAGCTTCAAAGTTGAATATAGCTACCGGCCTCCATGAGCCTGATGAACGTCATATTACTAATGAAGAGGCTCTCAGAAGGGTAGCGGCGGTTTTCGATCTCCAAAGAGAAGAAGGAACGTGCAATCTGATCAGCAGCACCACAAGCAAACCCAGCATCTGCCAGCTGATCGATAAGCTTGATACTCGATCTGTTGAAGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000380 GO:0000398 GO:0001817 GO:0001819 GO:0002218 GO:0002230 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002697 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0014070 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022008 GO:0030030 GO:0030154 GO:0030182 GO:0031175 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032101 GO:0032479 GO:0032481 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043021 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043330 GO:0043331 GO:0043484 GO:0043900 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045088 GO:0045089 GO:0045935 GO:0046483 GO:0048468 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050688 GO:0050691 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071359 GO:0071360 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0120036 GO:0140110 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
WW

Protein Analysis

384

Amino Acids

42.24

Weight (kDa)

5.56

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Patatin PF01734 16 - 182 7e-16 Patatin-like phospholipase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 218
AccI GTMKAC 1 cut(s) 249
AciI CCGC 6 cut(s) 102, 146, 495, 525, 1034, 1037
AclI AACGTT 1 cut(s) 336
AclWI GGATC 3 cut(s) 129, 337, 413
AcsI RAATTY 4 cut(s) 506, 592, 846, 877
AcuI CTGAAG 2 cut(s) 438, 789
AfaI GTAC 2 cut(s) 658, 762
AfiI CCNNNNNNNGG 1 cut(s) 218
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 8 cut(s) 286, 377, 620, 701, 953, 971, 1114, 1126
AluI AGCT 8 cut(s) 286, 377, 620, 701, 953, 971, 1114, 1126
Alw21I GWGCWC 2 cut(s) 180, 869
Alw26I GTCTC 1 cut(s) 300
AlwI GGATC 3 cut(s) 129, 337, 413
AlwNI CAGNNNCTG 1 cut(s) 1107
Ama87I CYCGRG 1 cut(s) 544
AoxI GGCC 2 cut(s) 91, 976
ApeKI GCWGC 5 cut(s) 458, 533, 617, 698, 1083
ApoI RAATTY 4 cut(s) 506, 592, 846, 877
ArsI GACNNNNNNTTYG 2 cut(s) 118, 150
AsuC2I CCSGG 3 cut(s) 119, 545, 546
AsuHPI GGTGA 1 cut(s) 91
AsuII TTCGAA 1 cut(s) 844
AvaI CYCGRG 1 cut(s) 544
Bbv12I GWGCWC 2 cut(s) 180, 869
BbvI GCAGC 5 cut(s) 470, 520, 629, 710, 1095
BccI CCATC 3 cut(s) 260, 515, 519
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BclI TGATCA 2 cut(s) 622, 1077
BcnI CCSGG 3 cut(s) 119, 545, 546
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 1 cut(s) 81
BisI GCNGC 7 cut(s) 147, 459, 534, 618, 699, 1035, 1084
BlsI GCNGC 7 cut(s) 148, 460, 535, 619, 700, 1036, 1085
Bme1390I CCNGG 3 cut(s) 119, 545, 546
BmeT110I CYCGRG 1 cut(s) 544
BmiI GGNNCC 1 cut(s) 638
BmrFI CCNGG 3 cut(s) 119, 545, 546
BmsI GCATC 4 cut(s) 453, 676, 717, 1113
Bpu14I TTCGAA 1 cut(s) 844
BpuEI CTTGAG 1 cut(s) 194
BpuMI CCSGG 3 cut(s) 119, 545, 546
Bsa29I ATCGAT 1 cut(s) 1119
BsaAI YACGTR 1 cut(s) 705
BsaJI CCNNGG 3 cut(s) 117, 544, 678
BsaWI WCCGGW 1 cut(s) 607
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse118I RCCGGY 1 cut(s) 974
Bse1I ACTGG 1 cut(s) 664
BseCI ATCGAT 1 cut(s) 1119
BseDI CCNNGG 3 cut(s) 117, 544, 678
BseGI GGATG 1 cut(s) 859
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 1036
BseNI ACTGG 1 cut(s) 664
BseRI GAGGAG 1 cut(s) 632
BseXI GCAGC 5 cut(s) 470, 520, 629, 710, 1095
BseYI CCCAGC 1 cut(s) 1100
BshFI GGCC 2 cut(s) 93, 978
BshVI ATCGAT 1 cut(s) 1119
BsiHKAI GWGCWC 2 cut(s) 180, 869
BsiHKCI CYCGRG 1 cut(s) 544
BsiSI CCGG 5 cut(s) 119, 422, 545, 608, 975
BslFI GGGAC 2 cut(s) 91, 120
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 300
BsmFI GGGAC 2 cut(s) 91, 120
BsnI GGCC 2 cut(s) 93, 978
BsoBI CYCGRG 1 cut(s) 544
Bsp119I TTCGAA 1 cut(s) 844
Bsp1286I GDGCHC 2 cut(s) 180, 869
Bsp143I GATC 8 cut(s) 121, 342, 418, 622, 1045, 1077, 1116, 1136
BspACI CCGC 6 cut(s) 102, 146, 495, 525, 1034, 1037
BspANI GGCC 2 cut(s) 93, 978
BspCNI CTCAG 1 cut(s) 1035
BspDI ATCGAT 1 cut(s) 1119
BspLI GGNNCC 1 cut(s) 638
BspPI GGATC 3 cut(s) 129, 337, 413
BspT104I TTCGAA 1 cut(s) 844
BsrFI RCCGGY 1 cut(s) 974
BsrI ACTGG 1 cut(s) 664
BssAI RCCGGY 1 cut(s) 974
BssECI CCNNGG 3 cut(s) 117, 544, 678
BssMI GATC 8 cut(s) 121, 342, 418, 622, 1045, 1077, 1116, 1136
BssNAI GTATAC 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 678
Bst1107I GTATAC 1 cut(s) 250
Bst4CI ACNGT 5 cut(s) 134, 216, 432, 694, 939
Bst6I CTCTTC 1 cut(s) 1008
BstBAI YACGTR 1 cut(s) 705
BstBI TTCGAA 1 cut(s) 844
BstC8I GCNNGC 2 cut(s) 732, 1112
BstDEI CTNAG 2 cut(s) 229, 1022
BstF5I GGATG 1 cut(s) 859
BstKTI GATC 8 cut(s) 124, 345, 421, 625, 1048, 1080, 1119, 1139
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 8 cut(s) 121, 342, 418, 622, 1045, 1077, 1116, 1136
BstMWI GCNNNNNNNGC 4 cut(s) 90, 695, 1092, 1101
BstSCI CCNGG 3 cut(s) 117, 543, 544
BstV1I GCAGC 5 cut(s) 470, 520, 629, 710, 1095
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BstZ17I GTATAC 1 cut(s) 250
Bsu15I ATCGAT 1 cut(s) 1119
BsuRI GGCC 2 cut(s) 93, 978
BsuTUI ATCGAT 1 cut(s) 1119
BtsCI GGATG 1 cut(s) 859
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 4 cut(s) 178, 212, 765, 935
Cac8I GCNNGC 2 cut(s) 732, 1112
CaiI CAGNNNCTG 1 cut(s) 1107
Cfr10I RCCGGY 1 cut(s) 974
Cfr9I CCCGGG 1 cut(s) 544
ClaI ATCGAT 1 cut(s) 1119
Csp6I GTAC 2 cut(s) 657, 761
CspCI CAANNNNNGTGG 2 cut(s) 803, 838
CviAII CATG 4 cut(s) 106, 720, 784, 983
CviQI GTAC 2 cut(s) 657, 761
DdeI CTNAG 2 cut(s) 229, 1022
DpnI GATC 8 cut(s) 123, 344, 420, 624, 1047, 1079, 1118, 1138
DpnII GATC 8 cut(s) 121, 342, 418, 622, 1045, 1077, 1116, 1136
Eam1104I CTCTTC 1 cut(s) 1008
EarI CTCTTC 1 cut(s) 1008
Eco130I CCWWGG 1 cut(s) 678
Eco57I CTGAAG 2 cut(s) 438, 789
Eco88I CYCGRG 1 cut(s) 544
EcoRI GAATTC 3 cut(s) 506, 846, 877
EcoT14I CCWWGG 1 cut(s) 678
EcoT22I ATGCAT 1 cut(s) 446
ErhI CCWWGG 1 cut(s) 678
FaeI CATG 4 cut(s) 109, 723, 787, 986
FaqI GGGAC 2 cut(s) 91, 120
FatI CATG 4 cut(s) 105, 719, 783, 982
FbaI TGATCA 2 cut(s) 622, 1077
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 7 cut(s) 147, 459, 534, 618, 699, 1035, 1084
FokI GGATG 1 cut(s) 866
Fsp4HI GCNGC 7 cut(s) 147, 459, 534, 618, 699, 1035, 1084
FspBI CTAG 1 cut(s) 81
GluI GCNGC 7 cut(s) 147, 459, 534, 618, 699, 1035, 1084
GsaI CCCAGC 1 cut(s) 1104
HaeIII GGCC 2 cut(s) 93, 978
HapII CCGG 5 cut(s) 119, 422, 545, 608, 975
Hin1II CATG 4 cut(s) 109, 723, 787, 986
HindIII AAGCTT 3 cut(s) 284, 951, 1124
HpaII CCGG 5 cut(s) 119, 422, 545, 608, 975
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 6 cut(s) 436, 449, 598, 829, 1025, 1077
Hpy188III TCNNGA 2 cut(s) 583, 851
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 4 cut(s) 377, 851, 1020, 1055
HpyCH4III ACNGT 5 cut(s) 134, 216, 432, 694, 939
HpyCH4IV ACGT 4 cut(s) 336, 704, 997, 1067
HpyCH4V TGCA 5 cut(s) 74, 239, 444, 730, 1071
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 695, 1092, 1101
HpyF3I CTNAG 2 cut(s) 229, 1022
HpySE526I ACGT 4 cut(s) 336, 704, 997, 1067
Hsp92II CATG 4 cut(s) 109, 723, 787, 986
Ksp22I TGATCA 2 cut(s) 622, 1077
Kzo9I GATC 8 cut(s) 121, 342, 418, 622, 1045, 1077, 1116, 1136
Lsp1109I GCAGC 5 cut(s) 470, 520, 629, 710, 1095
LweI GCATC 4 cut(s) 453, 676, 717, 1113
MaeI CTAG 1 cut(s) 81
MaeII ACGT 4 cut(s) 336, 704, 997, 1067
MaeIII GTNAC 4 cut(s) 97, 221, 568, 779
MalI GATC 8 cut(s) 123, 344, 420, 624, 1047, 1079, 1118, 1138
MboI GATC 8 cut(s) 121, 342, 418, 622, 1045, 1077, 1116, 1136
MboII GAAGA 3 cut(s) 464, 1025, 1070
MfeI CAATTG 1 cut(s) 860
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 2 cut(s) 180, 869
MluCI AATT 7 cut(s) 299, 413, 506, 592, 846, 860, 877
MnlI CCTC 9 cut(s) 22, 207, 487, 607, 650, 653, 925, 989, 1009
Mph1103I ATGCAT 1 cut(s) 446
MseI TTAA 1 cut(s) 941
MslI CAYNNNNRTG 1 cut(s) 104
MspA1I CMGCKG 2 cut(s) 620, 1114
MspI CCGG 5 cut(s) 119, 422, 545, 608, 975
MspR9I CCNGG 3 cut(s) 119, 545, 546
MunI CAATTG 1 cut(s) 860
MwoI GCNNNNNNNGC 4 cut(s) 90, 695, 1092, 1101
NciI CCSGG 3 cut(s) 119, 545, 546
NdeII GATC 8 cut(s) 121, 342, 418, 622, 1045, 1077, 1116, 1136
NlaIII CATG 4 cut(s) 109, 723, 787, 986
NlaIV GGNNCC 1 cut(s) 638
NmuCI GTSAC 3 cut(s) 97, 568, 779
NsiI ATGCAT 1 cut(s) 446
NspV TTCGAA 1 cut(s) 844
PflMI CCANNNNNTGG 1 cut(s) 218
PkrI GCNGC 7 cut(s) 148, 460, 535, 619, 700, 1036, 1085
Ppu21I YACGTR 1 cut(s) 705
Psp1406I AACGTT 1 cut(s) 336
PspFI CCCAGC 1 cut(s) 1100
PspN4I GGNNCC 1 cut(s) 638
PstNI CAGNNNCTG 1 cut(s) 1107
PsuI RGATCY 1 cut(s) 418
PvuII CAGCTG 2 cut(s) 620, 1114
RsaI GTAC 2 cut(s) 658, 762
RsaNI GTAC 2 cut(s) 657, 761
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 941
SatI GCNGC 7 cut(s) 147, 459, 534, 618, 699, 1035, 1084
Sau3AI GATC 8 cut(s) 121, 342, 418, 622, 1045, 1077, 1116, 1136
ScrFI CCNGG 3 cut(s) 119, 545, 546
SduI GDGCHC 2 cut(s) 180, 869
SfaNI GCATC 4 cut(s) 453, 676, 717, 1113
SfuI TTCGAA 1 cut(s) 844
SmaI CCCGGG 1 cut(s) 546
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 7 cut(s) 299, 413, 506, 592, 846, 860, 877
SsiI CCGC 6 cut(s) 102, 146, 495, 525, 1034, 1037
SspI AATATT 2 cut(s) 192, 208
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 3 cut(s) 117, 543, 544
StyI CCWWGG 1 cut(s) 678
TaaI ACNGT 5 cut(s) 134, 216, 432, 694, 939
TaiI ACGT 4 cut(s) 339, 707, 1000, 1070
TaqI TCGA 6 cut(s) 63, 162, 844, 1044, 1119, 1135
TasI AATT 7 cut(s) 299, 413, 506, 592, 846, 860, 877
TatI WGTACW 1 cut(s) 760
TauI GCSGC 2 cut(s) 149, 1037
Tru1I TTAA 1 cut(s) 941
Tru9I TTAA 1 cut(s) 941
TscAI CASTG 4 cut(s) 185, 219, 772, 942
TseFI GTSAC 3 cut(s) 97, 568, 779
TseI GCWGC 5 cut(s) 458, 533, 617, 698, 1083
Tsp45I GTSAC 3 cut(s) 97, 568, 779
TspDTI ATGAA 3 cut(s) 654, 1008, 1026
TspMI CCCGGG 1 cut(s) 544
TspRI CASTG 4 cut(s) 185, 219, 772, 942
Van91I CCANNNNNTGG 1 cut(s) 218
XapI RAATTY 4 cut(s) 506, 592, 846, 877
XcmI CCANNNNNNNNNTGG 1 cut(s) 518
XmaI CCCGGG 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 1 cut(s) 81
Zsp2I ATGCAT 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.