Rorug03G0266700

WW domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002830
Physical Location & Seq
Forward (+)
26153672 .. 26154301
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0266700.1

Sequence Viewer

Length: 630 bp
ATGGAACCAAAAACCCAGCAACCAACCGAGGATGGAGGAAGTAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAACAGGTGGAATCCCACTTCAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCGGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTAGAATCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTAATTGCTTTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGTAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000380 GO:0000398 GO:0001817 GO:0001819 GO:0002218 GO:0002230 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002697 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0014070 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022008 GO:0030030 GO:0030154 GO:0030182 GO:0031175 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032101 GO:0032479 GO:0032481 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043021 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043330 GO:0043331 GO:0043484 GO:0043900 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045088 GO:0045089 GO:0045935 GO:0046483 GO:0048468 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050688 GO:0050691 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071359 GO:0071360 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0120036 GO:0140110 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
WW

Protein Analysis

209

Amino Acids

23.2

Weight (kDa)

9.11

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 2.2e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 1 cut(s) 335
AciI CCGC 4 cut(s) 82, 265, 546, 625
AclWI GGATC 3 cut(s) 188, 363, 460
AcuI CTGAAG 2 cut(s) 87, 384
AfaI GTAC 2 cut(s) 203, 337
AfiI CCNNNNNNNGG 1 cut(s) 497
AgsI TTSAA 2 cut(s) 220, 473
AleI CACNNNNGTG 1 cut(s) 555
AluBI AGCT 5 cut(s) 130, 193, 404, 580, 605
AluI AGCT 5 cut(s) 130, 193, 404, 580, 605
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 3 cut(s) 188, 363, 460
Ama87I CYCGRG 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 477
Asp718I GGTACC 1 cut(s) 335
AspS9I GGNCC 2 cut(s) 153, 276
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 335, 512
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 276
AxyI CCTNAGG 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 300
BaeI ACNNNNGTAYC 2 cut(s) 319, 352
BanI GGYRCC 1 cut(s) 335
BanII GRGCYC 2 cut(s) 256, 582
BbsI GAAGAC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 26, 424, 530
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 2 cut(s) 51, 625
BlpI GCTNAGC 1 cut(s) 581
BlsI GCNGC 2 cut(s) 52, 626
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 2 cut(s) 153, 276
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 276
BmiI GGNNCC 4 cut(s) 6, 155, 337, 623
BmrFI CCNGG 1 cut(s) 55
BmsI GCATC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 530
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 581
BpuEI CTTGAG 2 cut(s) 107, 596
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse21I CCTNAGG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMII CTCAG 2 cut(s) 342, 595
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 582
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 256, 300, 582
Bsp143I GATC 6 cut(s) 106, 180, 210, 308, 355, 452
Bsp1720I GCTNAGC 1 cut(s) 581
BspACI CCGC 4 cut(s) 82, 265, 546, 625
BspCNI CTCAG 2 cut(s) 343, 594
BspLI GGNNCC 4 cut(s) 6, 155, 337, 623
BspPI GGATC 3 cut(s) 188, 363, 460
BspT107I GGYRCC 1 cut(s) 335
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 6 cut(s) 106, 180, 210, 308, 355, 452
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 1 cut(s) 266
BstDEI CTNAG 3 cut(s) 351, 370, 581
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 6 cut(s) 109, 183, 213, 311, 358, 455
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 6 cut(s) 106, 180, 210, 308, 355, 452
BstMWI GCNNNNNNNGC 3 cut(s) 79, 401, 591
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 1 cut(s) 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 530
BstX2I RGATCY 2 cut(s) 180, 452
BstYI RGATCY 2 cut(s) 180, 452
Bsu36I CCTNAGG 1 cut(s) 351
BtsCI GGATG 2 cut(s) 37, 292
Cfr13I GGNCC 2 cut(s) 153, 276
Csp6I GTAC 2 cut(s) 202, 336
CviAII CATG 7 cut(s) 70, 293, 301, 463, 493, 497, 520
CviQI GTAC 2 cut(s) 202, 336
DdeI CTNAG 3 cut(s) 351, 370, 581
DpnI GATC 6 cut(s) 108, 182, 212, 310, 357, 454
DpnII GATC 6 cut(s) 106, 180, 210, 308, 355, 452
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 580
Eco24I GRGCYC 2 cut(s) 256, 582
Eco47I GGWCC 2 cut(s) 153, 276
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 2 cut(s) 87, 384
Eco81I CCTNAGG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 498
EcoT38I GRGCYC 2 cut(s) 256, 582
FaeI CATG 7 cut(s) 73, 296, 304, 466, 496, 500, 523
FaqI GGGAC 1 cut(s) 139
FatI CATG 7 cut(s) 69, 292, 300, 462, 492, 496, 519
Fnu4HI GCNGC 2 cut(s) 51, 625
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 2 cut(s) 256, 582
Fsp4HI GCNGC 2 cut(s) 51, 625
GluI GCNGC 2 cut(s) 51, 625
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 1 cut(s) 54
Hin1II CATG 7 cut(s) 73, 296, 304, 466, 496, 500, 523
HinfI GANTC 4 cut(s) 94, 117, 172, 374
HpaII CCGG 1 cut(s) 54
HphI GGTGA 2 cut(s) 335, 512
Hpy166II GTNNAC 2 cut(s) 244, 279
Hpy188I TCNGA 5 cut(s) 106, 111, 177, 286, 535
Hpy188III TCNNGA 4 cut(s) 220, 241, 257, 619
Hpy8I GTNNAC 2 cut(s) 244, 279
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 304, 383, 496
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 401, 591
HpyF3I CTNAG 3 cut(s) 351, 370, 581
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 7 cut(s) 73, 296, 304, 466, 496, 500, 523
KpnI GGTACC 1 cut(s) 339
Kzo9I GATC 6 cut(s) 106, 180, 210, 308, 355, 452
LmnI GCTCC 2 cut(s) 127, 621
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 392
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 3 cut(s) 41, 515, 548
MalI GATC 6 cut(s) 108, 182, 212, 310, 357, 454
MboI GATC 6 cut(s) 106, 180, 210, 308, 355, 452
MboII GAAGA 5 cut(s) 280, 283, 369, 390, 535
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 2 cut(s) 180, 452
MhlI GDGCHC 3 cut(s) 256, 300, 582
MluCI AATT 2 cut(s) 340, 411
Mph1103I ATGCAT 1 cut(s) 498
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 2 cut(s) 366, 420
MslI CAYNNNNRTG 1 cut(s) 555
MspA1I CMGCKG 3 cut(s) 193, 404, 627
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 55
MunI CAATTG 1 cut(s) 340
MwoI GCNNNNNNNGC 3 cut(s) 79, 401, 591
NciI CCSGG 1 cut(s) 55
NdeII GATC 6 cut(s) 106, 180, 210, 308, 355, 452
NlaIII CATG 7 cut(s) 73, 296, 304, 466, 496, 500, 523
NlaIV GGNNCC 4 cut(s) 6, 155, 337, 623
NmuCI GTSAC 1 cut(s) 548
NsiI ATGCAT 1 cut(s) 498
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 555
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 4 cut(s) 94, 117, 172, 374
PkrI GCNGC 2 cut(s) 52, 626
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 4 cut(s) 6, 155, 337, 623
PspPI GGNCC 2 cut(s) 153, 276
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 2 cut(s) 180, 452
PvuII CAGCTG 2 cut(s) 193, 404
RsaI GTAC 2 cut(s) 203, 337
RsaNI GTAC 2 cut(s) 202, 336
RseI CAYNNNNRTG 1 cut(s) 555
SacI GAGCTC 1 cut(s) 582
SaqAI TTAA 2 cut(s) 366, 420
SatI GCNGC 2 cut(s) 51, 625
Sau3AI GATC 6 cut(s) 106, 180, 210, 308, 355, 452
Sau96I GGNCC 2 cut(s) 153, 276
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 3 cut(s) 256, 300, 582
SfaNI GCATC 1 cut(s) 392
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 2 cut(s) 153, 276
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 2 cut(s) 122, 575
SmoI CTYRAG 2 cut(s) 122, 575
Sse9I AATT 2 cut(s) 340, 411
SsiI CCGC 4 cut(s) 82, 265, 546, 625
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 213
TasI AATT 2 cut(s) 340, 411
TauI GCSGC 1 cut(s) 627
TfiI GAWTC 4 cut(s) 94, 117, 172, 374
Tru1I TTAA 2 cut(s) 366, 420
Tru9I TTAA 2 cut(s) 366, 420
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 3 cut(s) 281, 473, 536
VpaK11BI GGWCC 2 cut(s) 153, 276
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 477
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.