Rh3BG351700

WW domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002830
Physical Location & Seq
Forward (+)
41123568 .. 41132174
8607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG351700.1

Sequence Viewer

Length: 1272 bp
ATGGAGGAGTATGAGGCAGAGCCACCCCCTCCCGGCGTTCCTGCAACTAGACGTTCCTCACGGCCTCATCCTACTCAAATTGAAATTGCTGCGCAAAATGTGGTGTTGCACGAACAAGAGATTGCTACGCAGAATATCATACGAACTCAAAGAGAAGCAAGAGCTGTGGGTGGCTCTCCTAAGGATGGTTCGGACATCTTCTCTGAACGCCTTGATCCCAGCGCTCTCAAGGAGCATCTATTGAAGATGACCTCGGAACATCGAGCTCTTATGGCTGTAAAACGTGGCAAATCATCTACTGTCCCTGATCAACAAGGTAACTTAGAAATTGGAAACGGCTATGGTGTACCAGGCGGAGGTGCTTATCAGGGTGGGACGAGGTCTAATAGTACTCCACCTAGGAATTTGGGAGTTGGAATCAATGAAATGGGACAGATGAACTTTGAGCCTGATAAGGACTTTGAACAGAAACCTCCATCTAAAGAATTGTCCGAGTATCTTAAGAAAAAGTTGCGAGATAGGGGTATTCTTAAAGATGACTCAAACAAAGGCGACCTTAACATAATAAGTGCTTCAGCTCAACAGATGGAATATGGGAAATTGCCTCCTGGATGGGTGGCGGCAAAAGACCCTGCAAGTGGTGCTTTGTATTATTTTAATGAGGCCACAGGGAGGAGTCAATGGGAAAAGCCTGCTGAAACATCTTCTAATACACCACTTCCATCACCTTTATCCCTTCCGGAAGATTGGGTGGAGGCTTTGGATGAAACAACAGGTCACAAGTATTACTACAATATGAAGACACATGTCTCACAATGGAAACACCCTGACTCATCACAGCAAGCTGCATCTCGACATTTTGTTCATTGGGATGAACAATCATCTGAGCTACAAGTAGAAAAGGATCAATTATCCAAACAAAAGAGATGCATGGGTTGTGGTGGATGGGGAGTAGGCCTTGTTCAGACGTGGGATTACTGCAATCATTGCACGAGAATTCTTGGTCTTCCACAAAGCCAGTACATGACAACTAGCTTGAATTTTAATCACCAGACCACAAGTCCTGCAGATACCAAAGGTGATTTGGACAAAAAAGCCACCATGCAGAGGTATGCAACTTCTGTTGAGCTAGATTTTCGTCAATACTTGCCTTGCCTTAAACTGAGGAGTTGTAACCTGAAATGCGGACAACCTGTCGTTAACTGCCATTATGTTTCTCCATCACTAACCATAATAAACTTTCTTGAAATAAACATTTTTTTTATCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000380 GO:0000398 GO:0001817 GO:0001819 GO:0002218 GO:0002230 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002697 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0014070 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022008 GO:0030030 GO:0030154 GO:0030182 GO:0031175 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032101 GO:0032479 GO:0032481 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043021 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043330 GO:0043331 GO:0043484 GO:0043900 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045088 GO:0045089 GO:0045935 GO:0046483 GO:0048468 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050688 GO:0050691 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071359 GO:0071360 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0120036 GO:0140110 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
WW

Protein Analysis

423

Amino Acids

47.23

Weight (kDa)

6.47

Isoelectric Point (pI)

55.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WW PF00397 201 - 231 6.6e-14 WW domain
WW PF00397 246 - 276 8.1e-12 WW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 93
AccIII TCCGGA 1 cut(s) 739
AciI CCGC 3 cut(s) 354, 620, 1185
AclWI GGATC 2 cut(s) 209, 912
AcsI RAATTY 3 cut(s) 403, 996, 1039
AcuI CTGAAG 1 cut(s) 558
AfaI GTAC 3 cut(s) 348, 391, 1022
AfeI AGCGCT 1 cut(s) 223
AfiI CCNNNNNNNGG 6 cut(s) 32, 185, 356, 638, 672, 1107
AflII CTTAAG 1 cut(s) 500
AflIII ACRYGT 1 cut(s) 805
AgsI TTSAA 5 cut(s) 83, 244, 464, 1039, 1247
AhdI GACNNNNNGTC 2 cut(s) 1059, 1193
AjiI CACGTC 1 cut(s) 969
AjnI CCWGG 2 cut(s) 349, 607
AluBI AGCT 7 cut(s) 164, 266, 578, 845, 889, 1035, 1129
AluI AGCT 7 cut(s) 164, 266, 578, 845, 889, 1035, 1129
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 814
AlwI GGATC 2 cut(s) 209, 912
Aor13HI TCCGGA 1 cut(s) 739
Aor51HI AGCGCT 1 cut(s) 223
AoxI GGCC 3 cut(s) 62, 663, 955
ApeKI GCWGC 2 cut(s) 89, 845
ApoI RAATTY 3 cut(s) 403, 996, 1039
AspA2I CCTAGG 1 cut(s) 398
AspLEI GCGC 2 cut(s) 94, 224
AsuC2I CCSGG 1 cut(s) 33
AsuHPI GGTGA 3 cut(s) 717, 1040, 1091
AvrII CCTAGG 1 cut(s) 398
AxyI CCTNAGG 1 cut(s) 180
BanII GRGCYC 1 cut(s) 268
BauI CACGAG 1 cut(s) 991
BbsI GAAGAC 2 cut(s) 806, 998
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 76, 832
BccI CCATC 7 cut(s) 179, 484, 580, 606, 730, 939, 1228
BceAI ACGGC 2 cut(s) 77, 352
BciT130I CCWGG 2 cut(s) 351, 609
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 814
BfaI CTAG 4 cut(s) 48, 399, 1032, 1130
BfmI CTRYAG 1 cut(s) 1065
BfoI RGCGCY 1 cut(s) 225
BfrI CTTAAG 1 cut(s) 500
BisI GCNGC 3 cut(s) 90, 621, 846
BlnI CCTAGG 1 cut(s) 398
BlsI GCNGC 3 cut(s) 91, 622, 847
BmcAI AGTACT 1 cut(s) 391
Bme1390I CCNGG 3 cut(s) 33, 351, 609
BmeRI GACNNNNNGTC 2 cut(s) 1059, 1193
BmgBI CACGTC 1 cut(s) 969
BmrFI CCNGG 3 cut(s) 33, 351, 609
BmsI GCATC 3 cut(s) 244, 857, 917
BoxI GACNNNNGTC 1 cut(s) 806
BpiI GAAGAC 2 cut(s) 806, 998
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 33
BsaJI CCNNGG 2 cut(s) 252, 398
BsaWI WCCGGW 1 cut(s) 739
Bsc4I CCNNNNNNNGG 6 cut(s) 32, 185, 356, 638, 672, 1107
Bse1I ACTGG 1 cut(s) 1018
Bse21I CCTNAGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 985
BseAI TCCGGA 1 cut(s) 739
BseBI CCWGG 2 cut(s) 351, 609
BseDI CCNNGG 2 cut(s) 252, 398
BseGI GGATG 6 cut(s) 67, 190, 617, 769, 877, 950
BseLI CCNNNNNNNGG 6 cut(s) 32, 185, 356, 638, 672, 1107
BseMI GCAATG 1 cut(s) 985
BseMII CTCAG 2 cut(s) 876, 1154
BseNI ACTGG 1 cut(s) 1018
BseRI GAGGAG 3 cut(s) 20, 688, 1180
BseXI GCAGC 2 cut(s) 76, 832
BseYI CCCAGC 1 cut(s) 218
BshFI GGCC 3 cut(s) 64, 665, 957
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 2 cut(s) 33, 740
BslFI GGGAC 3 cut(s) 287, 388, 444
BslI CCNNNNNNNGG 6 cut(s) 32, 185, 356, 638, 672, 1107
BsmAI GTCTC 1 cut(s) 814
BsmFI GGGAC 3 cut(s) 287, 388, 444
BsnI GGCC 3 cut(s) 64, 665, 957
Bsp1286I GDGCHC 1 cut(s) 268
Bsp13I TCCGGA 1 cut(s) 739
Bsp143I GATC 3 cut(s) 214, 307, 904
BspACI CCGC 3 cut(s) 354, 620, 1185
BspANI GGCC 3 cut(s) 64, 665, 957
BspCNI CTCAG 2 cut(s) 877, 1155
BspEI TCCGGA 1 cut(s) 739
BspMAI CTGCAG 1 cut(s) 1069
BspPI GGATC 2 cut(s) 209, 912
BspTI CTTAAG 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 985
BsrI ACTGG 1 cut(s) 1018
BssECI CCNNGG 2 cut(s) 252, 398
BssMI GATC 3 cut(s) 214, 307, 904
BssSI CACGAG 1 cut(s) 991
BssT1I CCWWGG 1 cut(s) 398
Bst2BI CACGAG 1 cut(s) 991
Bst2UI CCWGG 2 cut(s) 351, 609
Bst4CI ACNGT 1 cut(s) 301
BstAFI CTTAAG 1 cut(s) 500
BstAPI GCANNNNNTGC 2 cut(s) 641, 987
BstC8I GCNNGC 2 cut(s) 693, 843
BstDEI CTNAG 4 cut(s) 180, 322, 885, 1163
BstF5I GGATG 6 cut(s) 67, 190, 617, 769, 877, 950
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 2 cut(s) 94, 224
BstKTI GATC 3 cut(s) 217, 310, 907
BstMAI GTCTC 1 cut(s) 814
BstMBI GATC 3 cut(s) 214, 307, 904
BstMWI GCNNNNNNNGC 3 cut(s) 272, 641, 987
BstNI CCWGG 2 cut(s) 351, 609
BstNSI RCATGY 1 cut(s) 809
BstPAI GACNNNNGTC 1 cut(s) 806
BstSCI CCNGG 3 cut(s) 31, 349, 607
BstSFI CTRYAG 1 cut(s) 1065
BstV1I GCAGC 2 cut(s) 76, 832
BstV2I GAAGAC 2 cut(s) 806, 998
Bsu36I CCTNAGG 1 cut(s) 180
BsuRI GGCC 3 cut(s) 64, 665, 957
BtrI CACGTC 1 cut(s) 969
BtsCI GGATG 6 cut(s) 67, 190, 617, 769, 877, 950
Cac8I GCNNGC 2 cut(s) 693, 843
CfoI GCGC 2 cut(s) 94, 224
Csp6I GTAC 3 cut(s) 347, 390, 1021
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviAII CATG 4 cut(s) 806, 931, 1024, 1102
CviQI GTAC 3 cut(s) 347, 390, 1021
DdeI CTNAG 4 cut(s) 180, 322, 885, 1163
DpnI GATC 3 cut(s) 216, 309, 906
DpnII GATC 3 cut(s) 214, 307, 904
DriI GACNNNNNGTC 2 cut(s) 1059, 1193
Eam1105I GACNNNNNGTC 2 cut(s) 1059, 1193
EciI GGCGGA 1 cut(s) 369
Ecl136II GAGCTC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 398
Eco147I AGGCCT 1 cut(s) 957
Eco24I GRGCYC 1 cut(s) 268
Eco47III AGCGCT 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 266
Eco57I CTGAAG 1 cut(s) 558
Eco81I CCTNAGG 1 cut(s) 180
EcoICRI GAGCTC 1 cut(s) 266
EcoRI GAATTC 1 cut(s) 996
EcoRII CCWGG 2 cut(s) 349, 607
EcoT14I CCWWGG 1 cut(s) 398
EcoT22I ATGCAT 1 cut(s) 932
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 398
FaeI CATG 4 cut(s) 809, 934, 1027, 1105
FalI AAGNNNNNCTT 4 cut(s) 540, 572, 628, 660
FaqI GGGAC 3 cut(s) 287, 388, 444
FatI CATG 4 cut(s) 805, 930, 1023, 1101
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 3 cut(s) 90, 621, 846
FokI GGATG 6 cut(s) 54, 197, 624, 776, 884, 957
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 3 cut(s) 90, 621, 846
FspBI CTAG 4 cut(s) 48, 399, 1032, 1130
FspI TGCGCA 1 cut(s) 93
GlaI GCGC 2 cut(s) 93, 223
GluI GCNGC 3 cut(s) 90, 621, 846
GsaI CCCAGC 1 cut(s) 222
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 3 cut(s) 64, 665, 957
HapII CCGG 2 cut(s) 33, 740
HhaI GCGC 2 cut(s) 94, 224
Hin1II CATG 4 cut(s) 809, 934, 1027, 1105
Hin6I GCGC 2 cut(s) 92, 222
HinP1I GCGC 2 cut(s) 92, 222
HincII GTYRAC 1 cut(s) 1201
HindII GTYRAC 1 cut(s) 1201
HinfI GANTC 4 cut(s) 417, 539, 676, 830
HpaI GTTAAC 1 cut(s) 1201
HpaII CCGG 2 cut(s) 33, 740
HphI GGTGA 3 cut(s) 717, 1040, 1091
Hpy166II GTNNAC 2 cut(s) 347, 1201
Hpy188I TCNGA 6 cut(s) 193, 205, 256, 493, 886, 966
Hpy188III TCNNGA 3 cut(s) 740, 852, 1244
Hpy8I GTNNAC 2 cut(s) 347, 1201
HpyAV CCTTC 1 cut(s) 746
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 3 cut(s) 52, 283, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 641, 987
HpyF3I CTNAG 4 cut(s) 180, 322, 885, 1163
HpySE526I ACGT 3 cut(s) 52, 283, 968
Hsp92II CATG 4 cut(s) 809, 934, 1027, 1105
HspAI GCGC 2 cut(s) 92, 222
Kpn2I TCCGGA 1 cut(s) 739
Ksp22I TGATCA 1 cut(s) 307
KspAI GTTAAC 1 cut(s) 1201
Kzo9I GATC 3 cut(s) 214, 307, 904
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 2 cut(s) 76, 832
LweI GCATC 3 cut(s) 244, 857, 917
MaeI CTAG 4 cut(s) 48, 399, 1032, 1130
MaeII ACGT 3 cut(s) 52, 283, 968
MaeIII GTNAC 3 cut(s) 317, 776, 1172
MalI GATC 3 cut(s) 216, 309, 906
MboI GATC 3 cut(s) 214, 307, 904
MboII GAAGA 6 cut(s) 190, 256, 696, 755, 811, 998
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 9 cut(s) 78, 84, 327, 403, 485, 599, 908, 996, 1039
MlyI GAGTC 3 cut(s) 533, 685, 824
MmeI TCCRAC 1 cut(s) 394
Mph1103I ATGCAT 1 cut(s) 932
MroI TCCGGA 1 cut(s) 739
MseI TTAA 8 cut(s) 501, 531, 558, 657, 1044, 1158, 1200, 1270
MslI CAYNNNNRTG 1 cut(s) 870
MspCI CTTAAG 1 cut(s) 500
MspI CCGG 2 cut(s) 33, 740
MspR9I CCNGG 3 cut(s) 33, 351, 609
MvaI CCWGG 2 cut(s) 351, 609
MwoI GCNNNNNNNGC 3 cut(s) 272, 641, 987
NciI CCSGG 1 cut(s) 33
NdeII GATC 3 cut(s) 214, 307, 904
NlaIII CATG 4 cut(s) 809, 934, 1027, 1105
NmuCI GTSAC 1 cut(s) 776
NsbI TGCGCA 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 932
NspI RCATGY 1 cut(s) 809
PceI AGGCCT 1 cut(s) 957
PciI ACATGT 1 cut(s) 805
PfeI GAWTC 1 cut(s) 417
PflFI GACNNNGTC 1 cut(s) 379
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 3 cut(s) 91, 622, 847
PleI GAGTC 3 cut(s) 533, 684, 824
PpsI GAGTC 3 cut(s) 533, 684, 824
PscI ACATGT 1 cut(s) 805
PshAI GACNNNNGTC 1 cut(s) 806
Psp124BI GAGCTC 1 cut(s) 268
Psp6I CCWGG 2 cut(s) 349, 607
PspFI CCCAGC 1 cut(s) 218
PspGI CCWGG 2 cut(s) 349, 607
PsrI GAACNNNNNNTAC 2 cut(s) 945, 977
PstI CTGCAG 1 cut(s) 1069
PsyI GACNNNGTC 1 cut(s) 379
RsaI GTAC 3 cut(s) 348, 391, 1022
RsaNI GTAC 3 cut(s) 347, 390, 1021
RseI CAYNNNNRTG 1 cut(s) 870
SacI GAGCTC 1 cut(s) 268
SaqAI TTAA 8 cut(s) 501, 531, 558, 657, 1044, 1158, 1200, 1270
SatI GCNGC 3 cut(s) 90, 621, 846
Sau3AI GATC 3 cut(s) 214, 307, 904
ScaI AGTACT 1 cut(s) 391
SchI GAGTC 3 cut(s) 533, 685, 824
ScrFI CCNGG 3 cut(s) 33, 351, 609
SduI GDGCHC 1 cut(s) 268
SfaNI GCATC 3 cut(s) 244, 857, 917
SfcI CTRYAG 1 cut(s) 1065
SmiMI CAYNNNNRTG 1 cut(s) 870
SmlI CTYRAG 2 cut(s) 227, 500
SmoI CTYRAG 2 cut(s) 227, 500
Sse9I AATT 9 cut(s) 78, 84, 327, 403, 485, 599, 908, 996, 1039
SseBI AGGCCT 1 cut(s) 957
SsiI CCGC 3 cut(s) 354, 620, 1185
SspMI CTAG 4 cut(s) 48, 399, 1032, 1130
SstI GAGCTC 1 cut(s) 268
StuI AGGCCT 1 cut(s) 957
StyD4I CCNGG 3 cut(s) 31, 349, 607
StyI CCWWGG 1 cut(s) 398
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 3 cut(s) 55, 286, 971
TaqI TCGA 2 cut(s) 262, 853
TasI AATT 9 cut(s) 78, 84, 327, 403, 485, 599, 908, 996, 1039
TatI WGTACW 2 cut(s) 389, 1020
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 1 cut(s) 417
Tru1I TTAA 8 cut(s) 501, 531, 558, 657, 1044, 1158, 1200, 1270
Tru9I TTAA 8 cut(s) 501, 531, 558, 657, 1044, 1158, 1200, 1270
TseFI GTSAC 1 cut(s) 776
TseI GCWGC 2 cut(s) 89, 845
Tsp45I GTSAC 1 cut(s) 776
TspDTI ATGAA 6 cut(s) 438, 452, 780, 812, 854, 888
Tth111I GACNNNGTC 1 cut(s) 379
Vha464I CTTAAG 1 cut(s) 500
XapI RAATTY 3 cut(s) 403, 996, 1039
XceI RCATGY 1 cut(s) 809
XcmI CCANNNNNNNNNTGG 1 cut(s) 1081
XmaJI CCTAGG 1 cut(s) 398
XspI CTAG 4 cut(s) 48, 399, 1032, 1130
ZrmI AGTACT 1 cut(s) 391
Zsp2I ATGCAT 1 cut(s) 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.