Rorug03G0266600

WW domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002830
Physical Location & Seq
Reverse (-)
26123412 .. 26127996
4585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0266600.1

Sequence Viewer

Length: 981 bp
ATGGAGCCAGAAGTCGGCAGTGATAGCAGAATCGGTGGCGCGTTTGGCAGAGACCAGGCAAAGGATGACTTGGGAGCTTCGGCGCTCAATTCGATCCAGAGAGCTATGCTTTTTCTGAAAGATAAGAGCGGGGGTGCATCCAGATCTGGCTTCTTTCAGCATGATATCGCCGTGGTGGGTGTCCCTGGTGCTGGCGGGGCTACATCGATTGGTGCATGGTCGCTGGCGCTGGGATTTGGCTATTCGATCGGTGGTCAAGGTCTGGTCCTTCCCGAAGGCCATGAGGGTTTTGATCTGATACGGTCTTGCACTTTTCCGTACATGGACGATGGTGGCTATGGTGTTCTCGCTGGCGGCAGCCTTGTTGGCGTCGGCGGCGGCCGTGGGTTGGTGGCCACCAGAGTTGCAATTGTTCTTGGTGGCTTTGGGCTTTTGTTAGGGTTTCTCATAACTGGGCTTGTTGGGTTAGTCTGGGCTGAATTAACATGGGCTCATAGCATGACTTTGATTGCTATTGGTGAAGTGACAAAGGAAATAGTTAAGGGGAGTTCAGACGTCTTTCCTATAAAACCAATGGACTATGGACGATTTCTGGTGATATCCTTAGGAACTGGCTCATCGAAAGCTGAACTGAAATACAATGCTCATGTTGCCTCCAAGTGGGGTGTGTGGAATTGGTTAACGAGCGGTGGTTCCACCCCATTGATCAATGCTTTCAGTCAAGCAAGTGCCGATATGGTCGATTTGCATCTTTCTGTGGTGTTCAAAGCCCTTCACTCGGAGAAAAACTATCTTCGAATTCAGGATCACACACTAAGTGGCGAAGTATCTTCAGTAGATATAGCAACAGAGAAGAATCTGGACCATCTTCTCAAAGTTGGTGAAAGACTATTGAGACAACCAGTTTCAAGGGTTAATTTAGAGACAGGCAGATTCGAAGCTTGTAATCATGAGACTAATAAAGAGGCTCTTATAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000380 GO:0000398 GO:0001817 GO:0001819 GO:0002218 GO:0002230 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002697 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0014070 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022008 GO:0030030 GO:0030154 GO:0030182 GO:0031175 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032101 GO:0032479 GO:0032481 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043021 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043330 GO:0043331 GO:0043484 GO:0043900 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045088 GO:0045089 GO:0045935 GO:0046483 GO:0048468 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050688 GO:0050691 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071359 GO:0071360 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0120036 GO:0140110 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
WW

Protein Analysis

326

Amino Acids

34.43

Weight (kDa)

6.14

Isoelectric Point (pI)

23.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 974
AatII GACGTC 1 cut(s) 558
AccBSI CCGCTC 2 cut(s) 129, 687
AccII CGCG 1 cut(s) 41
AciI CCGC 6 cut(s) 129, 195, 354, 375, 378, 687
AclWI GGATC 2 cut(s) 88, 813
AcoI YGGCCR 2 cut(s) 379, 393
AcsI RAATTY 1 cut(s) 798
AcuI CTGAAG 1 cut(s) 816
AcyI GRCGYC 2 cut(s) 369, 555
AdeI CACNNNGTG 1 cut(s) 818
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 6 cut(s) 14, 61, 191, 388, 660, 778
AgsI TTSAA 2 cut(s) 766, 909
AjnI CCWGG 2 cut(s) 54, 184
AluBI AGCT 4 cut(s) 77, 104, 626, 941
AluI AGCT 4 cut(s) 77, 104, 626, 941
Alw26I GTCTC 4 cut(s) 45, 889, 917, 947
AlwI GGATC 2 cut(s) 88, 813
AoxI GGCC 3 cut(s) 277, 379, 393
ApeKI GCWGC 1 cut(s) 357
ApoI RAATTY 1 cut(s) 798
AspLEI GCGC 3 cut(s) 41, 85, 229
AspS9I GGNCC 2 cut(s) 265, 862
AsuHPI GGTGA 3 cut(s) 530, 607, 893
AsuII TTCGAA 2 cut(s) 796, 936
AvaII GGWCC 2 cut(s) 265, 862
AxyI CCTNAGG 1 cut(s) 604
BalI TGGCCA 1 cut(s) 395
BanII GRGCYC 1 cut(s) 493
BbvI GCAGC 1 cut(s) 369
BccI CCATC 2 cut(s) 323, 873
BceAI ACGGC 2 cut(s) 155, 366
BciT130I CCWGG 2 cut(s) 56, 186
BclI TGATCA 1 cut(s) 705
BcoDI GTCTC 4 cut(s) 45, 889, 917, 947
BfoI RGCGCY 2 cut(s) 86, 230
BglI GCCNNNNNGGC 1 cut(s) 366
BglII AGATCT 1 cut(s) 143
BisI GCNGC 4 cut(s) 355, 358, 376, 379
BlsI GCNGC 4 cut(s) 356, 359, 377, 380
Bme1390I CCNGG 2 cut(s) 56, 186
Bme18I GGWCC 2 cut(s) 265, 862
BmgT120I GGNCC 2 cut(s) 265, 862
BmiI GGNNCC 2 cut(s) 6, 694
BmrFI CCNGG 2 cut(s) 56, 186
BmrI ACTGGG 1 cut(s) 462
BmsI GCATC 2 cut(s) 146, 757
BmuI ACTGGG 1 cut(s) 462
Bpu14I TTCGAA 2 cut(s) 796, 936
Bsa29I ATCGAT 1 cut(s) 206
BsaBI GATNNNNATC 1 cut(s) 747
BsaHI GRCGYC 2 cut(s) 369, 555
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 3 cut(s) 171, 184, 382
Bsc4I CCNNNNNNNGG 6 cut(s) 14, 61, 191, 388, 660, 778
Bse1I ACTGG 3 cut(s) 457, 616, 902
Bse21I CCTNAGG 1 cut(s) 604
Bse8I GATNNNNATC 1 cut(s) 747
BseBI CCWGG 2 cut(s) 56, 186
BseCI ATCGAT 1 cut(s) 206
BseDI CCNNGG 3 cut(s) 171, 184, 382
BseGI GGATG 2 cut(s) 70, 137
BseJI GATNNNNATC 1 cut(s) 747
BseLI CCNNNNNNNGG 6 cut(s) 14, 61, 191, 388, 660, 778
BseNI ACTGG 3 cut(s) 457, 616, 902
BseX3I CGGCCG 1 cut(s) 379
BseXI GCAGC 1 cut(s) 369
BseYI CCCAGC 1 cut(s) 229
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 2 cut(s) 249, 382
BshFI GGCC 3 cut(s) 279, 381, 395
BshVI ATCGAT 1 cut(s) 206
BsiEI CGRYCG 2 cut(s) 249, 382
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 6 cut(s) 14, 61, 191, 388, 660, 778
BsmAI GTCTC 4 cut(s) 45, 889, 917, 947
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 3 cut(s) 279, 381, 395
Bso31I GGTCTC 1 cut(s) 45
Bsp119I TTCGAA 2 cut(s) 796, 936
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 6 cut(s) 93, 143, 246, 292, 705, 805
BspACI CCGC 6 cut(s) 129, 195, 354, 375, 378, 687
BspANI GGCC 3 cut(s) 279, 381, 395
BspDI ATCGAT 1 cut(s) 206
BspFNI CGCG 1 cut(s) 41
BspHI TCATGA 1 cut(s) 949
BspLI GGNNCC 2 cut(s) 6, 694
BspPI GGATC 2 cut(s) 88, 813
BspT104I TTCGAA 2 cut(s) 796, 936
BspTNI GGTCTC 1 cut(s) 45
BsrBI CCGCTC 2 cut(s) 129, 687
BsrI ACTGG 3 cut(s) 457, 616, 902
BssECI CCNNGG 3 cut(s) 171, 184, 382
BssMI GATC 6 cut(s) 93, 143, 246, 292, 705, 805
BssNI GRCGYC 2 cut(s) 369, 555
Bst2UI CCWGG 2 cut(s) 56, 186
Bst4CI ACNGT 1 cut(s) 303
BstACI GRCGYC 2 cut(s) 369, 555
BstBI TTCGAA 2 cut(s) 796, 936
BstC8I GCNNGC 3 cut(s) 193, 225, 352
BstDEI CTNAG 2 cut(s) 604, 815
BstDSI CCRYGG 2 cut(s) 171, 382
BstF5I GGATG 2 cut(s) 70, 137
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 2 cut(s) 86, 230
BstHHI GCGC 3 cut(s) 41, 85, 229
BstKTI GATC 6 cut(s) 96, 146, 249, 295, 708, 808
BstMAI GTCTC 4 cut(s) 45, 889, 917, 947
BstMBI GATC 6 cut(s) 93, 143, 246, 292, 705, 805
BstMCI CGRYCG 2 cut(s) 249, 382
BstMWI GCNNNNNNNGC 6 cut(s) 24, 45, 197, 366, 375, 650
BstNI CCWGG 2 cut(s) 56, 186
BstSCI CCNGG 2 cut(s) 54, 184
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BstZI CGGCCG 1 cut(s) 379
Bsu15I ATCGAT 1 cut(s) 206
Bsu36I CCTNAGG 1 cut(s) 604
BsuRI GGCC 3 cut(s) 279, 381, 395
BsuTUI ATCGAT 1 cut(s) 206
BtgI CCRYGG 2 cut(s) 171, 382
BtsCI GGATG 2 cut(s) 70, 137
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 3 cut(s) 193, 225, 352
CciI TCATGA 1 cut(s) 949
CfoI GCGC 3 cut(s) 41, 85, 229
Cfr13I GGNCC 2 cut(s) 265, 862
ClaI ATCGAT 1 cut(s) 206
CseI GACGC 1 cut(s) 358
Csp6I GTAC 1 cut(s) 319
CspCI CAANNNNNGTGG 2 cut(s) 385, 420
CviAII CATG 8 cut(s) 161, 216, 281, 322, 486, 499, 647, 950
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 2 cut(s) 604, 815
DpnI GATC 6 cut(s) 95, 145, 248, 294, 707, 807
DpnII GATC 6 cut(s) 93, 143, 246, 292, 705, 805
DraIII CACNNNGTG 1 cut(s) 818
EaeI YGGCCR 2 cut(s) 379, 393
EagI CGGCCG 1 cut(s) 379
EclXI CGGCCG 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 493
Eco31I GGTCTC 1 cut(s) 45
Eco32I GATATC 2 cut(s) 166, 600
Eco47I GGWCC 2 cut(s) 265, 862
Eco52I CGGCCG 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 816
Eco81I CCTNAGG 1 cut(s) 604
EcoRI GAATTC 1 cut(s) 798
EcoRII CCWGG 2 cut(s) 54, 184
EcoRV GATATC 2 cut(s) 166, 600
EcoT38I GRGCYC 1 cut(s) 493
FaeI CATG 8 cut(s) 164, 219, 284, 325, 489, 502, 650, 953
FalI AAGNNNNNCTT 3 cut(s) 53, 85, 954
FaqI GGGAC 1 cut(s) 167
FatI CATG 8 cut(s) 160, 215, 280, 321, 485, 498, 646, 949
FauI CCCGC 2 cut(s) 122, 188
FbaI TGATCA 1 cut(s) 705
Fnu4HI GCNGC 4 cut(s) 355, 358, 376, 379
FokI GGATG 2 cut(s) 77, 124
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 4 cut(s) 355, 358, 376, 379
GlaI GCGC 3 cut(s) 40, 84, 228
GluI GCNGC 4 cut(s) 355, 358, 376, 379
GsaI CCCAGC 1 cut(s) 233
HaeII RGCGCY 2 cut(s) 86, 230
HaeIII GGCC 3 cut(s) 279, 381, 395
HgaI GACGC 1 cut(s) 358
HhaI GCGC 3 cut(s) 41, 85, 229
Hin1I GRCGYC 2 cut(s) 369, 555
Hin1II CATG 8 cut(s) 164, 219, 284, 325, 489, 502, 650, 953
Hin6I GCGC 3 cut(s) 39, 83, 227
HinP1I GCGC 3 cut(s) 39, 83, 227
HincII GTYRAC 1 cut(s) 681
HindII GTYRAC 1 cut(s) 681
HindIII AAGCTT 1 cut(s) 939
HinfI GANTC 3 cut(s) 30, 856, 933
HpaI GTTAAC 1 cut(s) 681
HphI GGTGA 3 cut(s) 530, 607, 893
Hpy166II GTNNAC 1 cut(s) 681
Hpy188I TCNGA 4 cut(s) 117, 297, 553, 781
Hpy188III TCNNGA 6 cut(s) 97, 141, 272, 803, 860, 950
Hpy8I GTNNAC 1 cut(s) 681
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 3 cut(s) 269, 278, 782
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 5 cut(s) 137, 215, 309, 407, 748
HpyF10VI GCNNNNNNNGC 6 cut(s) 24, 45, 197, 366, 375, 650
HpyF3I CTNAG 2 cut(s) 604, 815
HpySE526I ACGT 1 cut(s) 555
Hsp92I GRCGYC 2 cut(s) 369, 555
Hsp92II CATG 8 cut(s) 164, 219, 284, 325, 489, 502, 650, 953
HspAI GCGC 3 cut(s) 39, 83, 227
Ksp22I TGATCA 1 cut(s) 705
KspAI GTTAAC 1 cut(s) 681
Kzo9I GATC 6 cut(s) 93, 143, 246, 292, 705, 805
LmnI GCTCC 2 cut(s) 4, 74
Lsp1109I GCAGC 1 cut(s) 369
LweI GCATC 2 cut(s) 146, 757
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 1 cut(s) 523
MalI GATC 6 cut(s) 95, 145, 248, 294, 707, 807
MbiI CCGCTC 2 cut(s) 129, 687
MboI GATC 6 cut(s) 93, 143, 246, 292, 705, 805
MboII GAAGA 4 cut(s) 785, 822, 860, 865
MfeI CAATTG 1 cut(s) 408
MflI RGATCY 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 493
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 6 cut(s) 88, 408, 479, 673, 798, 916
MluNI TGGCCA 1 cut(s) 395
MnlI CCTC 3 cut(s) 277, 664, 958
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MseI TTAA 4 cut(s) 482, 540, 680, 915
Msp20I TGGCCA 1 cut(s) 395
MspR9I CCNGG 2 cut(s) 56, 186
MunI CAATTG 1 cut(s) 408
MvaI CCWGG 2 cut(s) 56, 186
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 6 cut(s) 24, 45, 197, 366, 375, 650
NdeII GATC 6 cut(s) 93, 143, 246, 292, 705, 805
NlaIII CATG 8 cut(s) 164, 219, 284, 325, 489, 502, 650, 953
NlaIV GGNNCC 2 cut(s) 6, 694
NmuCI GTSAC 1 cut(s) 523
NspV TTCGAA 2 cut(s) 796, 936
PagI TCATGA 1 cut(s) 949
PfeI GAWTC 3 cut(s) 30, 856, 933
PkrI GCNGC 4 cut(s) 356, 359, 377, 380
Ple19I CGATCG 1 cut(s) 249
PsiI TTATAA 1 cut(s) 974
Psp6I CCWGG 2 cut(s) 54, 184
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 2 cut(s) 54, 184
PspN4I GGNNCC 2 cut(s) 6, 694
PspPI GGNCC 2 cut(s) 265, 862
PsuI RGATCY 1 cut(s) 143
PvuI CGATCG 1 cut(s) 249
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SaqAI TTAA 4 cut(s) 482, 540, 680, 915
SatI GCNGC 4 cut(s) 355, 358, 376, 379
Sau3AI GATC 6 cut(s) 93, 143, 246, 292, 705, 805
Sau96I GGNCC 2 cut(s) 265, 862
ScrFI CCNGG 2 cut(s) 56, 186
SduI GDGCHC 1 cut(s) 493
SetI ASST 7 cut(s) 79, 106, 262, 558, 628, 943, 980
SfaNI GCATC 2 cut(s) 146, 757
SfuI TTCGAA 2 cut(s) 796, 936
SinI GGWCC 2 cut(s) 265, 862
Sse9I AATT 6 cut(s) 88, 408, 479, 673, 798, 916
SsiI CCGC 6 cut(s) 129, 195, 354, 375, 378, 687
StyD4I CCNGG 2 cut(s) 54, 184
TaaI ACNGT 1 cut(s) 303
TaiI ACGT 1 cut(s) 558
TaqI TCGA 7 cut(s) 92, 206, 245, 620, 741, 796, 936
TasI AATT 6 cut(s) 88, 408, 479, 673, 798, 916
TauI GCSGC 3 cut(s) 357, 378, 381
TfiI GAWTC 3 cut(s) 30, 856, 933
Tru1I TTAA 4 cut(s) 482, 540, 680, 915
Tru9I TTAA 4 cut(s) 482, 540, 680, 915
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 1 cut(s) 357
Tsp45I GTSAC 1 cut(s) 523
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 2 cut(s) 265, 862
XapI RAATTY 1 cut(s) 798
ZraI GACGTC 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.